Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0025617

Physical Location & Seq

Genomic Coordinates Reverse (-)

53538861 .. 53542204

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTCCCTCTTCTTCAACCTTCATGAAAATGGTCTCTGTGGCAGCTTCGGCTCCAACCCACTTGGTTACACATACCCAGTTTCATTCTTTAGAAAACCCACCAGTTACACTCTTTGAAAATTGCAAATCCATGGACCAACTGAAGCAAATGCATGCTCAAACCATTAAAACAGGTTTCGCATCGGACCCGGCCGCGCTCAACAGGATCATAGTCTTCTGTTGTACCCATGAATTTGGTGACATGAAGTACGCACGCCAGGTGTTTGTTAGAATTCCTGAACCAAGTGTTTTTATTTGCAACGCCATGATCAAAGGCTATAGTAGGACACATTGCTCACATTATGGGATATCTATGTATTCAGCAATGCGGAAGATGGGTGTGAAGCCCGATTGCTATACGTTCCCCTTCTTGTTAAGGGGATTTTCTCGTGAGATTGCGTTGAAATGGGGGAGAGGGTTCCATGCTCATGTGTTGAAGTATGGTTTCGATTCTAATGTTTTTGCTCACAATGCGTTGGTGCATATGTACTCTCTTTGTGGTCAAATTGATATGGCTCGTGGGGTTTTCGATATGGTCAGTGACAAGGATGTTGCTACTTGGAATGCAATGATCTCCGGGTACAATAAGATCAAGAAGTTCAATGAGTCATGGAGGCTTTTCCGTGACATGGAGAAGAAGGGAGTGTTTCCCACTTCTGTTACCCTTGTCTCAAAGGCCCTCTGTATAAATAAGCAAAGCATTGGCGCCAGTGGAGGCGAGTCTCGGAGTCCAACGGCAGAGGTGGTTTCTCAGATTCAAATCTCGACGGAGCACAACTCATCAAAGAAAAACAACATAGAAGGAGAAAATTTTGTGCTCGGACATAATGATAGGAATAATACAGGACACACGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

299

Amino Acids

33.49

Weight (kDa)

9.14

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 143	9.3e-10	PPR repeat family
PPR_2	PF13041	196 - 235	1.3e-11	PPR repeat family
PPR	PF01535	200 - 229	3.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025617)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007475.1_g000005
rosa_samantha	Rh2BG378900 Rh2CG357800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	746
AccII	CGCG	1 cut(s)	197
AciI	CCGC	2 cut(s)	195, 370
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	233, 273, 850
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	747
AfaI	GTAC	4 cut(s)	226, 251, 530, 623
AfiI	CCNNNNNNNGG	1 cut(s)	670
AgsI	TTSAA	6 cut(s)	18, 119, 445, 478, 643, 800
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	2 cut(s)	816, 861
Alw26I	GTCTC	3 cut(s)	40, 715, 768
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	192, 717
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	3 cut(s)	233, 273, 850
AspLEI	GCGC	2 cut(s)	199, 749
AspS9I	GGNCC	3 cut(s)	136, 187, 718
AsuC2I	CCSGG	2 cut(s)	191, 619
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	136, 187
BanI	GGYRCC	1 cut(s)	746
BauI	CACGAG	2 cut(s)	429, 558
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	2 cut(s)	816, 861
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	2 cut(s)	191, 619
BcoDI	GTCTC	3 cut(s)	40, 715, 768
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	750
BisI	GCNGC	2 cut(s)	45, 195
BlsI	GCNGC	2 cut(s)	46, 196
Bme1390I	CCNGG	3 cut(s)	191, 260, 619
Bme18I	GGWCC	2 cut(s)	136, 187
BmgT120I	GGNCC	3 cut(s)	136, 187, 718
BmiI	GGNNCC	5 cut(s)	6, 54, 189, 461, 748
BmrFI	CCNGG	3 cut(s)	191, 260, 619
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	803, 835
BpuMI	CCSGG	2 cut(s)	191, 619
BsaBI	GATNNNNATC	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	79, 104, 750
Bse3DI	GCAATG	3 cut(s)	331, 372, 615
Bse8I	GATNNNNATC	1 cut(s)	800
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	595
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	3 cut(s)	331, 372, 615
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	3 cut(s)	79, 104, 750
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 719
BshNI	GGYRCC	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	816, 861
BsiSI	CCGG	2 cut(s)	191, 618
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	3 cut(s)	40, 715, 768
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	194, 719
Bso31I	GGTCTC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	816, 861
Bsp143I	GATC	4 cut(s)	207, 309, 612, 630
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	2 cut(s)	195, 370
BspANI	GGCC	2 cut(s)	194, 719
BspCNI	CTCAG	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	5 cut(s)	6, 54, 189, 461, 748
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	40
BsrDI	GCAATG	3 cut(s)	331, 372, 615
BsrI	ACTGG	3 cut(s)	79, 104, 750
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	207, 309, 612, 630
BssNI	GRCGYC	1 cut(s)	747
BssSI	CACGAG	2 cut(s)	429, 558
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	2 cut(s)	429, 558
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	156, 256
BstDEI	CTNAG	1 cut(s)	792
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	750
BstHHI	GCGC	2 cut(s)	199, 749
BstKTI	GATC	4 cut(s)	210, 312, 615, 633
BstMAI	GTCTC	3 cut(s)	40, 715, 768
BstMBI	GATC	4 cut(s)	207, 309, 612, 630
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 512
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	189, 258, 617
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 719
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	586, 757
Cac8I	GCNNGC	2 cut(s)	156, 256
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	2 cut(s)	199, 749
Cfr13I	GGNCC	3 cut(s)	136, 187, 718
Csp6I	GTAC	4 cut(s)	225, 250, 529, 622
CviJI	RGCY	9 cut(s)	5, 47, 53, 194, 318, 388, 557, 658, 719
CviKI_1	RGCY	9 cut(s)	5, 47, 53, 194, 318, 388, 557, 658, 719
CviQI	GTAC	4 cut(s)	225, 250, 529, 622
DdeI	CTNAG	1 cut(s)	792
DinI	GGCGCC	1 cut(s)	748
DpnI	GATC	4 cut(s)	209, 311, 614, 632
DpnII	GATC	4 cut(s)	207, 309, 612, 630
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	136, 187
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	748
EheI	GGCGCC	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	45, 195
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	45, 195
GlaI	GCGC	2 cut(s)	198, 748
GluI	GCNGC	2 cut(s)	45, 195
HaeII	RGCGCY	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	194, 719
HapII	CCGG	2 cut(s)	191, 618
HhaI	GCGC	2 cut(s)	199, 749
Hin1I	GRCGYC	1 cut(s)	747
Hin6I	GCGC	2 cut(s)	197, 747
HinP1I	GCGC	2 cut(s)	197, 747
HinfI	GANTC	5 cut(s)	491, 647, 761, 769, 796
HpaII	CCGG	2 cut(s)	191, 618
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	4 cut(s)	187, 768, 795, 863
Hpy188III	TCNNGA	5 cut(s)	25, 278, 431, 634, 805
Hpy99I	CGWCG	1 cut(s)	811
HpyAV	CCTTC	4 cut(s)	31, 418, 673, 836
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	5 cut(s)	126, 154, 300, 523, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 512
HpyF3I	CTNAG	1 cut(s)	792
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	747
HspAI	GCGC	2 cut(s)	197, 747
KasI	GGCGCC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	207, 309, 612, 630
LmnI	GCTCC	3 cut(s)	10, 58, 811
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	191
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	6 cut(s)	67, 106, 239, 581, 665, 700
MalI	GATC	4 cut(s)	209, 311, 614, 632
MboI	GATC	4 cut(s)	207, 309, 612, 630
MboII	GAAGA	5 cut(s)	3, 6, 208, 385, 688
MhlI	GDGCHC	2 cut(s)	816, 861
MluCI	AATT	5 cut(s)	121, 233, 273, 546, 850
Mly113I	GGCGCC	1 cut(s)	747
MlyI	GAGTC	3 cut(s)	656, 770, 778
MmeI	TCCRAC	2 cut(s)	80, 797
MnlI	CCTC	6 cut(s)	19, 449, 648, 731, 749, 775
Mph1103I	ATGCAT	1 cut(s)	156
MseI	TTAA	2 cut(s)	168, 416
MslI	CAYNNNNRTG	2 cut(s)	29, 468
MspI	CCGG	2 cut(s)	191, 618
MspR9I	CCNGG	3 cut(s)	191, 260, 619
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	50, 512
NarI	GGCGCC	1 cut(s)	747
NciI	CCSGG	2 cut(s)	191, 619
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	4 cut(s)	207, 309, 612, 630
NlaIV	GGNNCC	5 cut(s)	6, 54, 189, 461, 748
NmuCI	GTSAC	3 cut(s)	239, 581, 665
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	24
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	491, 796
PkrI	GCNGC	2 cut(s)	46, 196
PleI	GAGTC	3 cut(s)	655, 769, 777
PluTI	GGCGCC	1 cut(s)	750
PpsI	GAGTC	3 cut(s)	655, 769, 777
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	5 cut(s)	6, 54, 189, 461, 748
PspPI	GGNCC	3 cut(s)	136, 187, 718
RsaI	GTAC	4 cut(s)	226, 251, 530, 623
RsaNI	GTAC	4 cut(s)	225, 250, 529, 622
RseI	CAYNNNNRTG	2 cut(s)	29, 468
SaqAI	TTAA	2 cut(s)	168, 416
SatI	GCNGC	2 cut(s)	45, 195
Sau3AI	GATC	4 cut(s)	207, 309, 612, 630
Sau96I	GGNCC	3 cut(s)	136, 187, 718
SchI	GAGTC	3 cut(s)	656, 770, 778
ScrFI	CCNGG	3 cut(s)	191, 260, 619
SduI	GDGCHC	2 cut(s)	816, 861
SetI	ASST	6 cut(s)	23, 49, 178, 264, 404, 786
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	748
SinI	GGWCC	2 cut(s)	136, 187
SmiMI	CAYNNNNRTG	2 cut(s)	29, 468
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	5 cut(s)	121, 233, 273, 546, 850
SsiI	CCGC	2 cut(s)	195, 370
SspDI	GGCGCC	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	189, 258, 617
StyI	CCWWGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	3 cut(s)	489, 570, 806
TasI	AATT	5 cut(s)	121, 233, 273, 546, 850
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	491, 796
Tru1I	TTAA	2 cut(s)	168, 416
Tru9I	TTAA	2 cut(s)	168, 416
TscAI	CASTG	2 cut(s)	586, 757
TseFI	GTSAC	3 cut(s)	239, 581, 665
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	239, 581, 665
TspDTI	ATGAA	5 cut(s)	13, 41, 74, 246, 260
TspGWI	ACGGA	2 cut(s)	653, 824
TspRI	CASTG	2 cut(s)	586, 757
VpaK11BI	GGWCC	2 cut(s)	136, 187
XapI	RAATTY	3 cut(s)	233, 273, 850
XceI	RCATGY	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.