Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009191.1

Orthogroup ID

OG0021483

Physical Location & Seq

Genomic Coordinates Reverse (-)

36158 .. 36667

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009191.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcatggtggagcacaggagtattttggcattactcctgatctaacaacactcggcaagatcattggtggcggtctgccaattggtgcatatggcggaaggagggagataatggaaatggtagcaccagcaggtccagtgtaccaagccgggaccttctgcggcaacccattgtcaatggctgcagggattcagactcttaagaggttaaaggagccaggaagttgcgaacacctgaataggattacaagtgaactaattcaaggtatcatagatgccgggaagagggctgggcatgaaatctgcggtggatgcataagtgggatcttgggtttttcttcactgaagggcctgtttacaattttgacgatgcaaaagggagtgacagtgcaaagtatgggaggtttcatacgggaatgctggaggaaggtgtatactttgctccttcacagtttgaggccgggcttacaagcatggtacatactcccgaagacatccgaatcacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

169

Amino Acids

18.07

Weight (kDa)

9.06

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0199591
rosa_multiflora	Rmu_sc0009191.1_g000013
rosa_samantha	Rh7AG180200 Rh7CG189800 Rh7DG183100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	4 cut(s)	72, 96, 162, 306
AclWI	GGATC	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	143, 479
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	349, 458
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	134, 153, 349
AsuC2I	CCSGG	3 cut(s)	151, 280, 462
AvaII	GGWCC	2 cut(s)	134, 153
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	3 cut(s)	151, 280, 462
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	163, 183
BlsI	GCNGC	2 cut(s)	164, 184
Bme1390I	CCNGG	4 cut(s)	151, 219, 280, 462
Bme18I	GGWCC	2 cut(s)	134, 153
BmgT120I	GGNCC	3 cut(s)	134, 153, 349
BmiI	GGNNCC	2 cut(s)	154, 216
BmrFI	CCNGG	4 cut(s)	151, 219, 280, 462
BmsI	GCATC	3 cut(s)	265, 302, 360
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	442
BpuMI	CCSGG	3 cut(s)	151, 280, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	317, 494
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	351, 460
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	150, 279, 461
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	351, 460
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	40, 60, 324
BspACI	CCGC	4 cut(s)	72, 96, 162, 306
BspANI	GGCC	2 cut(s)	351, 460
BspLI	GGNNCC	2 cut(s)	154, 216
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	40, 60, 324
BssNAI	GTATAC	1 cut(s)	435
Bst1107I	GTATAC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	388, 452
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	317, 494
BstKTI	GATC	3 cut(s)	43, 63, 327
BstMBI	GATC	3 cut(s)	40, 60, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	4 cut(s)	149, 217, 278, 460
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	351, 460
BtsCI	GGATG	2 cut(s)	317, 494
BtsIMutI	CAGTG	3 cut(s)	144, 341, 393
BveI	ACCTGC	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	134, 153, 349
Csp6I	GTAC	2 cut(s)	142, 478
CviAII	CATG	3 cut(s)	5, 296, 474
CviJI	RGCY	7 cut(s)	149, 182, 217, 290, 351, 460, 465
CviKI_1	RGCY	7 cut(s)	149, 182, 217, 290, 351, 460, 465
CviQI	GTAC	2 cut(s)	142, 478
DpnI	GATC	3 cut(s)	42, 62, 326
DpnII	GATC	3 cut(s)	40, 60, 324
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	134, 153
Eco57I	CTGAAG	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	153, 349
EcoRII	CCWGG	1 cut(s)	217
EcoT22I	ATGCAT	2 cut(s)	6, 317
FaeI	CATG	3 cut(s)	8, 299, 477
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	4, 295, 473
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	2 cut(s)	163, 183
FokI	GGATG	2 cut(s)	324, 481
Fsp4HI	GCNGC	2 cut(s)	163, 183
GluI	GCNGC	2 cut(s)	163, 183
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	2 cut(s)	351, 460
HapII	CCGG	3 cut(s)	150, 279, 461
Hin1II	CATG	3 cut(s)	8, 299, 477
HinfI	GANTC	3 cut(s)	190, 196, 500
HpaII	CCGG	3 cut(s)	150, 279, 461
Hpy166II	GTNNAC	4 cut(s)	142, 254, 357, 435
Hpy188I	TCNGA	2 cut(s)	195, 499
Hpy188III	TCNNGA	2 cut(s)	38, 487
Hpy8I	GTNNAC	4 cut(s)	142, 254, 357, 435
HpyAV	CCTTC	5 cut(s)	93, 166, 340, 421, 455
HpyCH4III	ACNGT	2 cut(s)	388, 452
HpyCH4V	TGCA	6 cut(s)	4, 89, 185, 315, 373, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	8, 299, 477
Kzo9I	GATC	3 cut(s)	40, 60, 324
LmnI	GCTCC	3 cut(s)	11, 214, 447
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	265, 302, 360
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	42, 62, 326
MboI	GATC	3 cut(s)	40, 60, 324
MboII	GAAGA	3 cut(s)	295, 330, 502
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	81, 258, 360
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	96, 198, 279, 395, 417, 450
Mph1103I	ATGCAT	2 cut(s)	6, 317
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	201, 209
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	3 cut(s)	150, 279, 461
MspR9I	CCNGG	4 cut(s)	151, 219, 280, 462
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	3 cut(s)	151, 280, 462
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	40, 60, 324
NlaIII	CATG	3 cut(s)	8, 299, 477
NlaIV	GGNNCC	2 cut(s)	154, 216
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	2 cut(s)	6, 317
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	190, 500
PkrI	GCNGC	2 cut(s)	164, 184
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	154, 216
PspPI	GGNCC	3 cut(s)	134, 153, 349
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	2 cut(s)	143, 479
RsaNI	GTAC	2 cut(s)	142, 478
SaqAI	TTAA	2 cut(s)	201, 209
SatI	GCNGC	2 cut(s)	163, 183
Sau3AI	GATC	3 cut(s)	40, 60, 324
Sau96I	GGNCC	3 cut(s)	134, 153, 349
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	151, 219, 280, 462
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	7 cut(s)	136, 158, 209, 237, 268, 406, 432
SfaNI	GCATC	3 cut(s)	265, 302, 360
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	134, 153
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	81, 258, 360
SsiI	CCGC	4 cut(s)	72, 96, 162, 306
StyD4I	CCNGG	4 cut(s)	149, 217, 278, 460
TaaI	ACNGT	2 cut(s)	388, 452
TasI	AATT	3 cut(s)	81, 258, 360
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	190, 500
Tru1I	TTAA	2 cut(s)	201, 209
Tru9I	TTAA	2 cut(s)	201, 209
TscAI	CASTG	3 cut(s)	144, 348, 393
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	312, 397
TspRI	CASTG	3 cut(s)	144, 348, 393
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	134, 153
XmiI	GTMKAC	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	258
Zsp2I	ATGCAT	2 cut(s)	6, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.