Rh7DG183100

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0021483
Physical Location & Seq
Forward (+)
17029610 .. 17030375
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG183100.1

Sequence Viewer

Length: 510 bp
ATGCATGGTGGAGCACAGGAGTATTTTGGCATTACTCCTGATCTAACAACACTCGGCAAGATCATTGGTGGCGGTCTGCCAATTGGTGCATATGGCGGAAGGAGGGAGATAATGGAAATGGTAGCACCAGCAGGTCCAGTGTACCAAGCCGGGACCTTCTGCGGCAACCCATTGTCAATGGCTGCAGGGATTCAGACTCTTAAGAGGTTAAAGGAGCCAGGAAGTTGCGAACACCTGAATAGGATTACAAGTGAACTAATTCAAGGTATCATAGATGCCGGGAAGAGGGCTGGGCATGAAATCTGCGGTGGATGCATAAGTGGGATCTTGGGTTTTTCTTCACTGAAGGGCCTGTTTACAATTTTGACGATGCAAAAGGGAGTGACAGTGCAAAGTACGGGAGGTTTCATACGGGAATGCTGGAGGAAGGTGTATACTTTGCTCCTTCACAGTTTGAGGCCGGGCTTACAAGCATGGTACATACTCCCGAAGACATCCGAATCACAATAG

Protein Analysis

169

Amino Acids

18.04

Weight (kDa)

9.06

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 5 - 109 1.7e-18 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021483)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0199591
rosa_multiflora Rmu_sc0009191.1_g000013
rosa_samantha Rh7AG180200 Rh7CG189800 Rh7DG183100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 434
AciI CCGC 4 cut(s) 72, 96, 162, 306
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 143, 397, 479
AfiI CCNNNNNNNGG 1 cut(s) 285
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 16
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 349, 458
ApeKI GCWGC 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 3 cut(s) 134, 153, 349
AsuC2I CCSGG 3 cut(s) 151, 280, 462
AvaII GGWCC 2 cut(s) 134, 153
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 219
BcnI CCSGG 3 cut(s) 151, 280, 462
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 2 cut(s) 163, 183
BlsI GCNGC 2 cut(s) 164, 184
Bme1390I CCNGG 4 cut(s) 151, 219, 280, 462
Bme18I GGWCC 2 cut(s) 134, 153
BmgT120I GGNCC 3 cut(s) 134, 153, 349
BmiI GGNNCC 2 cut(s) 154, 216
BmrFI CCNGG 4 cut(s) 151, 219, 280, 462
BmsI GCATC 3 cut(s) 265, 302, 360
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 442
BpuMI CCSGG 3 cut(s) 151, 280, 462
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 317, 494
BseLI CCNNNNNNNGG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 2 cut(s) 351, 460
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 3 cut(s) 150, 279, 461
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 2 cut(s) 351, 460
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 40, 60, 324
BspACI CCGC 4 cut(s) 72, 96, 162, 306
BspANI GGCC 2 cut(s) 351, 460
BspLI GGNNCC 2 cut(s) 154, 216
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 137
BssMI GATC 3 cut(s) 40, 60, 324
BssNAI GTATAC 1 cut(s) 435
Bst1107I GTATAC 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 388, 452
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 317, 494
BstKTI GATC 3 cut(s) 43, 63, 327
BstMBI GATC 3 cut(s) 40, 60, 324
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 4 cut(s) 149, 217, 278, 460
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BstZ17I GTATAC 1 cut(s) 435
BsuRI GGCC 2 cut(s) 351, 460
BtsCI GGATG 2 cut(s) 317, 494
BtsIMutI CAGTG 3 cut(s) 144, 341, 393
BveI ACCTGC 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 134, 153, 349
Csp6I GTAC 3 cut(s) 142, 396, 478
CviAII CATG 3 cut(s) 5, 296, 474
CviJI RGCY 7 cut(s) 149, 182, 217, 290, 351, 460, 465
CviKI_1 RGCY 7 cut(s) 149, 182, 217, 290, 351, 460, 465
CviQI GTAC 3 cut(s) 142, 396, 478
DpnI GATC 3 cut(s) 42, 62, 326
DpnII GATC 3 cut(s) 40, 60, 324
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 134, 153
Eco57I CTGAAG 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 153, 349
EcoRII CCWGG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 6, 317
FaeI CATG 3 cut(s) 8, 299, 477
FaqI GGGAC 1 cut(s) 166
FatI CATG 3 cut(s) 4, 295, 473
FauNDI CATATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 163, 183
FokI GGATG 2 cut(s) 324, 481
Fsp4HI GCNGC 2 cut(s) 163, 183
GluI GCNGC 2 cut(s) 163, 183
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 2 cut(s) 351, 460
HapII CCGG 3 cut(s) 150, 279, 461
Hin1II CATG 3 cut(s) 8, 299, 477
HinfI GANTC 3 cut(s) 190, 196, 500
HpaII CCGG 3 cut(s) 150, 279, 461
Hpy166II GTNNAC 4 cut(s) 142, 254, 357, 435
Hpy188I TCNGA 2 cut(s) 195, 499
Hpy188III TCNNGA 2 cut(s) 38, 487
Hpy8I GTNNAC 4 cut(s) 142, 254, 357, 435
HpyAV CCTTC 5 cut(s) 93, 166, 340, 421, 455
HpyCH4III ACNGT 2 cut(s) 388, 452
HpyCH4V TGCA 6 cut(s) 4, 89, 185, 315, 373, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
Hsp92II CATG 3 cut(s) 8, 299, 477
Kzo9I GATC 3 cut(s) 40, 60, 324
LmnI GCTCC 3 cut(s) 11, 214, 447
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 3 cut(s) 265, 302, 360
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 42, 62, 326
MboI GATC 3 cut(s) 40, 60, 324
MboII GAAGA 3 cut(s) 295, 330, 502
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 81, 258, 360
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 6 cut(s) 96, 198, 279, 395, 417, 450
Mph1103I ATGCAT 2 cut(s) 6, 317
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 201, 209
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 3 cut(s) 150, 279, 461
MspR9I CCNGG 4 cut(s) 151, 219, 280, 462
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 312
NciI CCSGG 3 cut(s) 151, 280, 462
NdeI CATATG 1 cut(s) 91
NdeII GATC 3 cut(s) 40, 60, 324
NlaIII CATG 3 cut(s) 8, 299, 477
NlaIV GGNNCC 2 cut(s) 154, 216
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 382
NsiI ATGCAT 2 cut(s) 6, 317
PctI GAATGC 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 190, 500
PkrI GCNGC 2 cut(s) 164, 184
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 154, 216
PspPI GGNCC 3 cut(s) 134, 153, 349
PspPPI RGGWCCY 1 cut(s) 153
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 3 cut(s) 143, 397, 479
RsaNI GTAC 3 cut(s) 142, 396, 478
SaqAI TTAA 2 cut(s) 201, 209
SatI GCNGC 2 cut(s) 163, 183
Sau3AI GATC 3 cut(s) 40, 60, 324
Sau96I GGNCC 3 cut(s) 134, 153, 349
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 4 cut(s) 151, 219, 280, 462
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 136, 158, 209, 237, 268, 406, 432
SfaNI GCATC 3 cut(s) 265, 302, 360
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 134, 153
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 81, 258, 360
SsiI CCGC 4 cut(s) 72, 96, 162, 306
StyD4I CCNGG 4 cut(s) 149, 217, 278, 460
TaaI ACNGT 2 cut(s) 388, 452
TasI AATT 3 cut(s) 81, 258, 360
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 2 cut(s) 190, 500
Tru1I TTAA 2 cut(s) 201, 209
Tru9I TTAA 2 cut(s) 201, 209
TscAI CASTG 3 cut(s) 144, 348, 393
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 312, 397
TspRI CASTG 3 cut(s) 144, 348, 393
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 134, 153
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 258
Zsp2I ATGCAT 2 cut(s) 6, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.