Rh7AG180200

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0021483
Physical Location & Seq
Reverse (-)
16042304 .. 16043067
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG180200.1

Sequence Viewer

Length: 528 bp
ATGACTGGCTTCCGCTTGTCTTATGGTGGAGCACAGGAGTATTTTGGCATTACTCCTTATCTAACAACACTCGGCAAGATCATTGGTGGCGGTCTGCCAATTGGTGCATATGGCGGAAGGAGGGAGATAATGGAAATGGTAGCACCAGCAGGTCCAGTGTACCAAGCCGGGACCTTCTGCGGCAACCCATTGTCAATGGCTGCAGGGATTCAGACTCTTAAGAGGTTAAAGGAGCCAGGAAGTTACGAACACCTGAATAAGATTACAAGTGAACTAATACAAGGTATCATAGATGCCGGGAAGAGGGCTGGGCATGCAATCTGCGGTGGATGCATAAGTGGGATCTTGGGTTTTTCTTCATTGAAGGGCCTGTTTACAACTTTGACGATGCAAAAGGGAGTGACAGTGCAAAGTATGGGAGGTTTCATACGGGAATGCTGGAGGGAGGTGTATACTTTGCTCCTTCACAGTTTGAGGCCGGGCTTACAAGCATGGTACATACTCCCGAAGACATCCGAATCACAATAG

Protein Analysis

175

Amino Acids

18.77

Weight (kDa)

9.25

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 11 - 140 2.4e-16 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021483)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0199591
rosa_multiflora Rmu_sc0009191.1_g000013
rosa_samantha Rh7AG180200 Rh7CG189800 Rh7DG183100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 452
AciI CCGC 5 cut(s) 13, 90, 114, 180, 324
AclWI GGATC 1 cut(s) 350
AfaI GTAC 2 cut(s) 161, 497
AfiI CCNNNNNNNGG 1 cut(s) 303
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 34
AlwI GGATC 1 cut(s) 350
AoxI GGCC 2 cut(s) 367, 476
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 152, 171, 367
AsuC2I CCSGG 3 cut(s) 169, 298, 480
AvaII GGWCC 2 cut(s) 152, 171
BbsI GAAGAC 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 3 cut(s) 169, 298, 480
BfmI CTRYAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 181, 201
BlsI GCNGC 2 cut(s) 182, 202
Bme1390I CCNGG 4 cut(s) 169, 237, 298, 480
Bme18I GGWCC 2 cut(s) 152, 171
BmgT120I GGNCC 3 cut(s) 152, 171, 367
BmiI GGNNCC 2 cut(s) 172, 234
BmrFI CCNGG 4 cut(s) 169, 237, 298, 480
BmsI GCATC 3 cut(s) 283, 320, 378
BpiI GAAGAC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 460
BpuMI CCSGG 3 cut(s) 169, 298, 480
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 2 cut(s) 10, 155
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 335, 512
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 10, 155
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 2 cut(s) 369, 478
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 3 cut(s) 168, 297, 479
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 369, 478
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 78, 342
BspACI CCGC 5 cut(s) 13, 90, 114, 180, 324
BspANI GGCC 2 cut(s) 369, 478
BspLI GGNNCC 2 cut(s) 172, 234
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 218
BsrI ACTGG 2 cut(s) 10, 155
BssMI GATC 2 cut(s) 78, 342
BssNAI GTATAC 1 cut(s) 453
Bst1107I GTATAC 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 406, 470
Bst6I CTCTTC 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 315
BstF5I GGATG 2 cut(s) 335, 512
BstKTI GATC 2 cut(s) 81, 345
BstMBI GATC 2 cut(s) 78, 342
BstMWI GCNNNNNNNGC 2 cut(s) 314, 330
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 4 cut(s) 167, 235, 296, 478
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BstZ17I GTATAC 1 cut(s) 453
BsuRI GGCC 2 cut(s) 369, 478
BtsCI GGATG 2 cut(s) 335, 512
BtsIMutI CAGTG 2 cut(s) 162, 411
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 3 cut(s) 152, 171, 367
Csp6I GTAC 2 cut(s) 160, 496
CviAII CATG 2 cut(s) 314, 492
CviJI RGCY 8 cut(s) 9, 167, 200, 235, 308, 369, 478, 483
CviKI_1 RGCY 8 cut(s) 9, 167, 200, 235, 308, 369, 478, 483
CviQI GTAC 2 cut(s) 160, 496
DpnI GATC 2 cut(s) 80, 344
DpnII GATC 2 cut(s) 78, 342
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 152, 171
EcoO109I RGGNCCY 2 cut(s) 171, 367
EcoRII CCWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 335
FaeI CATG 2 cut(s) 317, 495
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 313, 491
FauNDI CATATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 181, 201
FokI GGATG 2 cut(s) 342, 499
Fsp4HI GCNGC 2 cut(s) 181, 201
GluI GCNGC 2 cut(s) 181, 201
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 2 cut(s) 369, 478
HapII CCGG 3 cut(s) 168, 297, 479
Hin1II CATG 2 cut(s) 317, 495
HinfI GANTC 3 cut(s) 208, 214, 518
HpaII CCGG 3 cut(s) 168, 297, 479
Hpy166II GTNNAC 4 cut(s) 160, 272, 375, 453
Hpy188I TCNGA 2 cut(s) 213, 517
Hpy188III TCNNGA 1 cut(s) 505
Hpy8I GTNNAC 4 cut(s) 160, 272, 375, 453
HpyAV CCTTC 4 cut(s) 111, 184, 358, 473
HpyCH4III ACNGT 2 cut(s) 406, 470
HpyCH4V TGCA 6 cut(s) 107, 203, 317, 333, 391, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 330
Hsp92II CATG 2 cut(s) 317, 495
Kzo9I GATC 2 cut(s) 78, 342
LmnI GCTCC 3 cut(s) 29, 232, 465
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 283, 320, 378
MaeIII GTNAC 2 cut(s) 242, 400
MalI GATC 2 cut(s) 80, 344
MboI GATC 2 cut(s) 78, 342
MboII GAAGA 3 cut(s) 313, 348, 520
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 7 cut(s) 114, 216, 297, 413, 435, 439, 468
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 2 cut(s) 219, 227
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 3 cut(s) 168, 297, 479
MspR9I CCNGG 4 cut(s) 169, 237, 298, 480
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 314, 330
NciI CCSGG 3 cut(s) 169, 298, 480
NdeI CATATG 1 cut(s) 109
NdeII GATC 2 cut(s) 78, 342
NlaIII CATG 2 cut(s) 317, 495
NlaIV GGNNCC 2 cut(s) 172, 234
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 208, 518
PkrI GCNGC 2 cut(s) 182, 202
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 172, 234
PspPI GGNCC 3 cut(s) 152, 171, 367
PspPPI RGGWCCY 1 cut(s) 171
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 2 cut(s) 161, 497
RsaNI GTAC 2 cut(s) 160, 496
SaqAI TTAA 2 cut(s) 219, 227
SatI GCNGC 2 cut(s) 181, 201
Sau3AI GATC 2 cut(s) 78, 342
Sau96I GGNCC 3 cut(s) 152, 171, 367
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 169, 237, 298, 480
SduI GDGCHC 1 cut(s) 34
SetI ASST 7 cut(s) 154, 176, 227, 255, 286, 424, 450
SfaNI GCATC 3 cut(s) 283, 320, 378
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 2 cut(s) 152, 171
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SphI GCATGC 1 cut(s) 317
Sse9I AATT 1 cut(s) 99
SsiI CCGC 5 cut(s) 13, 90, 114, 180, 324
StyD4I CCNGG 4 cut(s) 167, 235, 296, 478
TaaI ACNGT 2 cut(s) 406, 470
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 208, 518
Tru1I TTAA 2 cut(s) 219, 227
Tru9I TTAA 2 cut(s) 219, 227
TscAI CASTG 2 cut(s) 162, 411
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 348, 415
TspRI CASTG 2 cut(s) 162, 411
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 152, 171
XceI RCATGY 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.