Rmu_sc0009360.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0025452
Physical Location & Seq
Reverse (-)
101982 .. 103606
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000035.1.cds

Sequence Viewer

Length: 1341 bp
atggacggatcattctcttgtcctccagaacacattactatggaagaaaatgaggttgcatctgatatagtaaaggagtacatggattgggtgcaaaatgattctgacattatgtctatacctgcagctactctgtccagtgatactctctccttcattgttggaaatataatggcctcagttcttcatggtttcccttcagagtttgctaccatgaaaactataataaggatcaaaacactaaaatcccctgttttaatggaagaattcagatctctcttgttaattgctgaagatgagattaatcaatctgtgaagtccatttctctgtctttggaggctgctatggttgcgtttgatgataattccaaaggtattttatcctctcattgtttgaataatagttgttcacctaattctgaaatggttggcacatctactacacctgctgcgataatttcaaacactaatgctcttgcaagcaattcttcaaaacttgttactcaaattggttgtgtgcctcaaccgactattatatctaccacacctgggtatgtttttgcatcaactcatgcgactagtgctgtacctgcctctaatactatgatgtttacaagtagtgttacttctcctactggatgcactacgcaatacatgcctaattctgagtatataatgagtgctgctcctgctgcattaaatggctgcatcattagtcattctccttcaccatacatgtttaatgttcaacctcaaaatgttggttattctccttataataatggtttggttcagtcacaagtcaacacaggattcattcaacctaatggtagtatccaatacgatgaaggacttattgaaccacatgatactttttcatgtcaaaatcattgtggtcaagataagaataatggtgtctatggacagagaaataggttcaattctgatggtgggaggagtgatccatttgtgcacaataatcaagtttctcaagcaagatctagtgactctccaagtgtgtgttttgataaaatttgtcaaatatgtaaacaatttggacaccttgctggaatttttcctcaaaggcatacctatacctttcagcctccaacttatgtcccggatgctactcaaagtcttcctttgcatattgataatgcaactctagtttcctctgatctttccgaatggcatcgagaattgcttaaggaaattaaagcttttccaacacaaggcacttggcgactcttatctacttcagaaaaatctggactaagttgtaggcaggcctcttatcctccgaagccgtgccaatcactgccactcattgatcctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

48.4

Weight (kDa)

5.16

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025452)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000158.1_g000020 Rmu_sc0009360.1_g000035 Rmu_ssc0000116.1_g000046

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 3 cut(s) 130, 454, 598
AclWI GGATC 4 cut(s) 16, 239, 956, 1325
AcsI RAATTY 3 cut(s) 266, 1032, 1071
AcuI CTGAAG 3 cut(s) 183, 312, 1242
AfaI GTAC 2 cut(s) 80, 588
AfiI CCNNNNNNNGG 2 cut(s) 549, 1232
AflII CTTAAG 1 cut(s) 1205
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 7 cut(s) 397, 462, 492, 749, 821, 860, 940
AhdI GACNNNNNGTC 1 cut(s) 112
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 2 cut(s) 547, 1333
AluBI AGCT 2 cut(s) 128, 1220
AluI AGCT 2 cut(s) 128, 1220
Alw21I GWGCWC 1 cut(s) 975
Alw44I GTGCAC 1 cut(s) 971
AlwI GGATC 4 cut(s) 16, 239, 956, 1325
AoxI GGCC 2 cut(s) 174, 1287
ApaLI GTGCAC 1 cut(s) 971
ApeKI GCWGC 6 cut(s) 125, 341, 449, 683, 692, 705
ApoI RAATTY 3 cut(s) 266, 1032, 1071
AseI ATTAAT 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 1121
AsuHPI GGTGA 2 cut(s) 402, 720
BaeGI GKGCMC 1 cut(s) 975
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BbsI GAAGAC 1 cut(s) 1130
Bbv12I GWGCWC 1 cut(s) 975
BbvI GCAGC 6 cut(s) 137, 328, 436, 670, 679, 692
BccI CCATC 1 cut(s) 941
BceAI ACGGC 1 cut(s) 1291
BciT130I CCWGG 2 cut(s) 549, 1335
BciVI GTATCC 1 cut(s) 845
BcnI CCSGG 1 cut(s) 1121
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 3 cut(s) 579, 1002, 1166
BfmI CTRYAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 1205
BfuAI ACCTGC 3 cut(s) 130, 454, 598
BfuI GTATCC 1 cut(s) 845
BglII AGATCT 2 cut(s) 272, 998
BisI GCNGC 6 cut(s) 126, 342, 450, 684, 693, 706
BlsI GCNGC 6 cut(s) 127, 343, 451, 685, 694, 707
Bme1390I CCNGG 3 cut(s) 549, 1121, 1335
BmeRI GACNNNNNGTC 1 cut(s) 112
BmrFI CCNGG 3 cut(s) 549, 1121, 1335
BmsI GCATC 6 cut(s) 68, 572, 629, 717, 1114, 1201
BpiI GAAGAC 1 cut(s) 1130
BplI GAGNNNNNCTC 2 cut(s) 670, 702
BpmI CTGGAG 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 1121
BsaJI CCNNGG 1 cut(s) 548
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 1232
Bse1I ACTGG 2 cut(s) 138, 640
BseBI CCWGG 2 cut(s) 549, 1335
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 2 cut(s) 644, 1129
BseLI CCNNNNNNNGG 2 cut(s) 549, 1232
BseMII CTCAG 2 cut(s) 192, 657
BseNI ACTGG 2 cut(s) 138, 640
BseRI GAGGAG 1 cut(s) 970
BseSI GKGCMC 1 cut(s) 975
BseXI GCAGC 6 cut(s) 137, 328, 436, 670, 679, 692
BshFI GGCC 2 cut(s) 176, 1289
BsiHKAI GWGCWC 1 cut(s) 975
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 2 cut(s) 549, 1232
BsmFI GGGAC 1 cut(s) 1103
BsnI GGCC 2 cut(s) 176, 1289
Bsp1286I GDGCHC 1 cut(s) 975
Bsp143I GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
BspANI GGCC 2 cut(s) 176, 1289
BspCNI CTCAG 2 cut(s) 191, 658
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 3 cut(s) 130, 454, 598
BspPI GGATC 4 cut(s) 16, 239, 956, 1325
BspTI CTTAAG 1 cut(s) 1205
BsrI ACTGG 2 cut(s) 138, 640
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
Bst2UI CCWGG 2 cut(s) 549, 1335
BstAFI CTTAAG 1 cut(s) 1205
BstAPI GCANNNNNTGC 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 481, 1287
BstDEI CTNAG 3 cut(s) 178, 666, 1274
BstF5I GGATG 2 cut(s) 644, 1129
BstKTI GATC 7 cut(s) 11, 234, 275, 964, 1001, 1180, 1333
BstMBI GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
BstMWI GCNNNNNNNGC 6 cut(s) 350, 581, 590, 655, 689, 692
BstNI CCWGG 2 cut(s) 549, 1335
BstNSI RCATGY 2 cut(s) 658, 739
BstSCI CCNGG 3 cut(s) 547, 1119, 1333
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 975
BstV1I GCAGC 6 cut(s) 137, 328, 436, 670, 679, 692
BstV2I GAAGAC 1 cut(s) 1130
BstX2I RGATCY 2 cut(s) 272, 998
BstYI RGATCY 2 cut(s) 272, 998
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 2 cut(s) 176, 1289
BtsCI GGATG 2 cut(s) 644, 1129
BtsI GCAGTG 1 cut(s) 1316
BtsIMutI CAGTG 2 cut(s) 145, 1316
BveI ACCTGC 3 cut(s) 130, 454, 598
Cac8I GCNNGC 2 cut(s) 481, 1287
Csp6I GTAC 2 cut(s) 79, 587
CviAII CATG 8 cut(s) 82, 188, 214, 572, 655, 736, 866, 879
CviJI RGCY 8 cut(s) 128, 176, 341, 705, 1105, 1220, 1289, 1306
CviKI_1 RGCY 8 cut(s) 128, 176, 341, 705, 1105, 1220, 1289, 1306
CviQI GTAC 2 cut(s) 79, 587
DdeI CTNAG 3 cut(s) 178, 666, 1274
DpnI GATC 7 cut(s) 10, 233, 274, 963, 1000, 1179, 1332
DpnII GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
DriI GACNNNNNGTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 1289
Eco57I CTGAAG 3 cut(s) 183, 312, 1242
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 547, 1333
FaeI CATG 8 cut(s) 85, 191, 217, 575, 658, 739, 869, 882
FalI AAGNNNNNCTT 4 cut(s) 472, 504, 1126, 1158
FaqI GGGAC 1 cut(s) 1103
FatI CATG 8 cut(s) 81, 187, 213, 571, 654, 735, 865, 878
Fnu4HI GCNGC 6 cut(s) 126, 342, 450, 684, 693, 706
FokI GGATG 2 cut(s) 651, 1136
Fsp4HI GCNGC 6 cut(s) 126, 342, 450, 684, 693, 706
FspBI CTAG 3 cut(s) 579, 1002, 1166
GluI GCNGC 6 cut(s) 126, 342, 450, 684, 693, 706
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 2 cut(s) 176, 1289
HapII CCGG 1 cut(s) 1121
Hin1II CATG 8 cut(s) 85, 191, 217, 575, 658, 739, 869, 882
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 4 cut(s) 101, 813, 1007, 1245
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 2 cut(s) 402, 720
Hpy166II GTNNAC 5 cut(s) 410, 612, 805, 973, 1049
Hpy188III TCNNGA 4 cut(s) 26, 899, 1196, 1269
Hpy8I GTNNAC 5 cut(s) 410, 612, 805, 973, 1049
HpyAV CCTTC 4 cut(s) 163, 207, 735, 842
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 581, 590, 655, 689, 692
HpyF3I CTNAG 3 cut(s) 178, 666, 1274
Hsp92II CATG 8 cut(s) 85, 191, 217, 575, 658, 739, 869, 882
Kzo9I GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 6 cut(s) 137, 328, 436, 670, 679, 692
LweI GCATC 6 cut(s) 68, 572, 629, 717, 1114, 1201
MaeI CTAG 3 cut(s) 579, 1002, 1166
MaeIII GTNAC 4 cut(s) 499, 622, 795, 1004
MalI GATC 7 cut(s) 10, 233, 274, 963, 1000, 1179, 1332
MboI GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
MboII GAAGA 6 cut(s) 56, 176, 275, 305, 480, 1130
MflI RGATCY 2 cut(s) 272, 998
MhlI GDGCHC 1 cut(s) 975
MlyI GAGTC 2 cut(s) 1001, 1239
MmeI TCCRAC 3 cut(s) 142, 1133, 1250
MseI TTAA 7 cut(s) 257, 284, 303, 698, 741, 1206, 1215
MslI CAYNNNNRTG 1 cut(s) 38
MspCI CTTAAG 1 cut(s) 1205
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 3 cut(s) 549, 1121, 1335
MvaI CCWGG 2 cut(s) 549, 1335
MwoI GCNNNNNNNGC 6 cut(s) 350, 581, 590, 655, 689, 692
NciI CCSGG 1 cut(s) 1121
NdeII GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
NlaIII CATG 8 cut(s) 85, 191, 217, 575, 658, 739, 869, 882
NmuCI GTSAC 2 cut(s) 795, 1004
NspI RCATGY 2 cut(s) 658, 739
PaqCI CACCTGC 1 cut(s) 454
PceI AGGCCT 1 cut(s) 1289
PciI ACATGT 1 cut(s) 735
PfeI GAWTC 2 cut(s) 101, 813
PfoI TCCNGGA 1 cut(s) 1119
PkrI GCNGC 6 cut(s) 127, 343, 451, 685, 694, 707
PleI GAGTC 2 cut(s) 1001, 1239
PpsI GAGTC 2 cut(s) 1001, 1239
PscI ACATGT 1 cut(s) 735
PshBI ATTAAT 1 cut(s) 303
PsiI TTATAA 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 547, 1333
PspGI CCWGG 2 cut(s) 547, 1333
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 272, 998
RsaI GTAC 2 cut(s) 80, 588
RsaNI GTAC 2 cut(s) 79, 587
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 7 cut(s) 257, 284, 303, 698, 741, 1206, 1215
SatI GCNGC 6 cut(s) 126, 342, 450, 684, 693, 706
Sau3AI GATC 7 cut(s) 8, 231, 272, 961, 998, 1177, 1330
SchI GAGTC 2 cut(s) 1001, 1239
ScrFI CCNGG 3 cut(s) 549, 1121, 1335
SduI GDGCHC 1 cut(s) 975
SfaNI GCATC 6 cut(s) 68, 572, 629, 717, 1114, 1201
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 990, 1205
SmoI CTYRAG 2 cut(s) 990, 1205
SpeI ACTAGT 1 cut(s) 578
SseBI AGGCCT 1 cut(s) 1289
SspMI CTAG 3 cut(s) 579, 1002, 1166
StuI AGGCCT 1 cut(s) 1289
StyD4I CCNGG 3 cut(s) 547, 1119, 1333
TaqI TCGA 1 cut(s) 1195
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 2 cut(s) 101, 813
Tru1I TTAA 7 cut(s) 257, 284, 303, 698, 741, 1206, 1215
Tru9I TTAA 7 cut(s) 257, 284, 303, 698, 741, 1206, 1215
TscAI CASTG 2 cut(s) 145, 1323
TseFI GTSAC 2 cut(s) 795, 1004
TseI GCWGC 6 cut(s) 125, 341, 449, 683, 692, 705
Tsp45I GTSAC 2 cut(s) 795, 1004
TspDTI ATGAA 6 cut(s) 145, 176, 230, 805, 861, 867
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 145, 1323
Vha464I CTTAAG 1 cut(s) 1205
VneI GTGCAC 1 cut(s) 971
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 3 cut(s) 266, 1032, 1071
XceI RCATGY 2 cut(s) 658, 739
XspI CTAG 3 cut(s) 579, 1002, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.