Rmu_sc0009516.1_g000006

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009516.1
OG0013043
Physical Location & Seq
Reverse (-)
30339 .. 35886
5548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009516.1_g000006.1.cds

Sequence Viewer

Length: 2520 bp
atgaatgtcacaagtaggactaggtacctgttgagagcgacgttcttgtatggtaactttgacagcaacaatgtttatcctaagtttgatatttctgttggggcaactcattggtctacgattgtgatttcggatgcgaatactatagagatgatagagctgatatttctggctactagtcctactgtcagtgtgtgcttgtccaatgctacaactgggcagccttttatatcgaccttggagcttcgacagttcaatggttcggtttactatactgattatgaacaacagttttacctcagtgtctccgctaggattaattttggtgcagatagtgaagatccagttaggtaccctgatgacccttttgatagaatttggttatcagactccatcaagaaagcaaattaccttgttgacattgctgctggaaccaagaaagtcgcaaccaaattgccaattgatgttaatagggatgacctgccgcctcagaaagttatgcagacggctgtagttggtacaaatggatcattgacttaccggctgaacctggatggttttcctggtactggctgggcagtcacctactttgcagaaattgaagatttggctccagatgagtccagaaagtttaggctagtacttccaggaaatcctgaactcagcaaagctattgttaatattgaggaaaacgcccaaggaaaatatcgtctctatgaaccaggatttacaaacttatcgcttccatttgtattatcttttagatttgggaaaacatctgattctaccaggggccctctcttgaatgcaatggagataaataagtatctggaaaaaactgatgggtctcaagatggagctgctattgctagtttcatttcacaatactcatatgcagactgggcacaagaaggtggtgatccatgccttccagttccatggtcttgggttgagtgtaattctgatgcacaaccaagaatcgttaaaattaaattatccagtatgaatttaacagggaatatcccttcagacttgacaaagttgagcggtttagttgagttatggcttgatgggaactcactgactggtccaatacccgatttcagtggatgtgtggacttgaagatcattcacctggagaataaccagttgtcgggtggactgccatcctctttgatggacctgccaagtttgaaggaactgtatgtgcaaaataatttgctatctggaactataccatcgggacttgacgacaaagtggttatgaactacactggaaacattaatcttcgagaagggaggagaaatggtagccgcagaaatattattattggtacaacagttggggctgctgtcttaattatagccaccattgcatcctgcatactcttgcgcaaaggaaaaaagaaataccatgagcaagacaaacttagtcaccccttacccgtacaaaggctagagtctaacaagaatgatgctccaactgaagctgcacactgcttcactcactctgaaattgaagaggctactagaaagtttgagaagaagataggttctggaggttttggagttgtttactatggtaaaacaaaagatggaaaggaaattgcagttaaagtgctaaccagcaattcctttcagggaaagcgagaattttcaaatgaggtaactcttctttcaaggatccaccacagaaatctggtccagtttcttgggtattgccaagaagatggtagaagtatgcttgtttatgagttcatgcacaatggaactctcaaggagcatctttatggcccattgacacatgaacagagaatcaattggatcaagcgtctggagattgctgaagatgctgcaaaagggatcgaataccttcatacaggctgcgttccagccattattcatagggatttgaaaagcagcaacattctaattgacaaaaacatgagggcaaaggtttcagattttggtctttccaaacttgcagtagacggagcatctcatgtttccagcatagttcggggcactgttggctatctggatcctgagtactatatctcccagcagttgacagacaagagtgatgtttacagcttcggtgtcattcttcttgagctgatatccggtcaagaagcgatatctaatgaaaactttggtgttaattgccgtaatatagtccaatgggcaaagttacacatcgaaagtggggacattcagggaatcattgatccctcgctgcatgatgaatatgacatccagtcaatgtggaagatagcggagaaagctttgatgtgtgttcaagcacatggatacatgaggccatcaatttcagaggttctcaaggaaatccaagatgcaatcttaatggaaaggggtgcagcagcagcaagagacggtaactcagacgatacatcgaagaattcaattcattcttcgttaaacttgggttccttggatcttggtggaaatgataattacctatcacttgatgagtctattgtgaggccaactgctcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

839

Amino Acids

93.01

Weight (kDa)

5.62

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37050 AT2G37050 AT2G37050 AT2G37050
fragaria_vesca FvH4_6g15210
malus_domestica MD04G1104800.v1.1 MD12G1125100.v1.1
prunus_persica Prupe.6G241900_v2.0.a1 Prupe.6G241900_v2.0.a1
pyrus_communis pycom12g12330
rosa_chinensis RchiOBHm_Chr3g0468561
rosa_laevigata RLG00000024422
rosa_multiflora Rmu_sc0009516.1_g000006
rosa_roxburghii Rroxscaffold_6G00412690
rosa_rugosa Rorug03G0096000
rosa_samantha Rh3BG166600 Rh3DG166000
rosa_wichuraiana Rw3G013630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1394
Acc36I ACCTGC 2 cut(s) 489, 1191
Acc65I GGTACC 2 cut(s) 24, 351
AccB1I GGYRCC 2 cut(s) 24, 351
AccBSI CCGCTC 1 cut(s) 1047
AccI GTMKAC 2 cut(s) 116, 1989
AciI CCGC 5 cut(s) 309, 485, 1047, 1315, 2276
AcsI RAATTY 4 cut(s) 375, 1006, 1652, 2419
AcuI CTGAAG 3 cut(s) 1011, 1506, 1866
AfaI GTAC 8 cut(s) 26, 353, 520, 568, 642, 1336, 1449, 2051
AfiI CCNNNNNNNGG 3 cut(s) 569, 1153, 1452
AhdI GACNNNNNGTC 1 cut(s) 2257
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 6 cut(s) 549, 562, 646, 721, 788, 1134
AluBI AGCT 8 cut(s) 160, 244, 671, 860, 1490, 2094, 2116, 2285
AluI AGCT 8 cut(s) 160, 244, 671, 860, 1490, 2094, 2116, 2285
Alw26I GTCTC 4 cut(s) 310, 716, 852, 2385
AoxI GGCC 4 cut(s) 793, 1792, 2318, 2504
ApaI GGGCCC 1 cut(s) 797
ApoI RAATTY 4 cut(s) 375, 1006, 1652, 2419
AseI ATTAAT 2 cut(s) 318, 1284
Asp700I GAANNNNTTC 1 cut(s) 1872
Asp718I GGTACC 2 cut(s) 24, 351
AspLEI GCGC 1 cut(s) 1395
AspS9I GGNCC 6 cut(s) 793, 794, 1088, 1180, 1702, 1793
AsuHPI GGTGA 4 cut(s) 574, 929, 1124, 1427
AvaII GGWCC 3 cut(s) 1088, 1180, 1702
BaeGI GKGCMC 3 cut(s) 797, 907, 2027
BaeI ACNNNNGTAYC 2 cut(s) 1326, 1359
BamHI GGATCC 2 cut(s) 1683, 2041
BanI GGYRCC 2 cut(s) 24, 351
BanII GRGCYC 1 cut(s) 797
BceAI ACGGC 2 cut(s) 522, 2151
BciT130I CCWGG 6 cut(s) 551, 564, 648, 723, 790, 1136
BciVI GTATCC 1 cut(s) 2303
BcoDI GTCTC 4 cut(s) 310, 716, 852, 2385
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 7 cut(s) 21, 177, 312, 638, 870, 1457, 1530
BfmI CTRYAG 2 cut(s) 144, 510
BfuAI ACCTGC 2 cut(s) 489, 1191
BfuI GTATCC 1 cut(s) 2303
BmcAI AGTACT 2 cut(s) 642, 2051
Bme1390I CCNGG 6 cut(s) 551, 564, 648, 723, 790, 1136
Bme18I GGWCC 3 cut(s) 1088, 1180, 1702
BmeRI GACNNNNNGTC 1 cut(s) 2257
BmgT120I GGNCC 6 cut(s) 793, 794, 1088, 1180, 1702, 1793
BmiI GGNNCC 9 cut(s) 26, 353, 433, 612, 794, 795, 1685, 2043, 2449
BmrFI CCNGG 6 cut(s) 551, 564, 648, 723, 790, 1136
BmrI ACTGGG 2 cut(s) 225, 910
BmsI GCATC 8 cut(s) 124, 955, 1385, 1465, 1792, 1840, 2006, 2344
BmuI ACTGGG 2 cut(s) 225, 910
BpmI CTGGAG 4 cut(s) 597, 1157, 1578, 1856
BpuEI CTTGAG 4 cut(s) 834, 1760, 2132, 2324
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 5 cut(s) 237, 697, 789, 938, 2451
BsaWI WCCGGW 1 cut(s) 2123
BsaXI ACNNNNNCTCC 4 cut(s) 1294, 1324, 2042, 2072
Bsc4I CCNNNNNNNGG 3 cut(s) 569, 1153, 1452
Bse118I RCCGGY 1 cut(s) 540
Bse3DI GCAATG 3 cut(s) 420, 816, 1371
BseBI CCWGG 6 cut(s) 551, 564, 648, 723, 790, 1136
BseDI CCNNGG 5 cut(s) 237, 697, 789, 938, 2451
BseGI GGATG 7 cut(s) 139, 481, 559, 1115, 1166, 1376, 2253
BseLI CCNNNNNNNGG 3 cut(s) 569, 1153, 1452
BseMI GCAATG 3 cut(s) 420, 816, 1371
BseMII CTCAG 5 cut(s) 313, 503, 676, 2037, 2415
BseRI GAGGAG 1 cut(s) 1315
BseSI GKGCMC 3 cut(s) 797, 907, 2027
BseYI CCCAGC 2 cut(s) 573, 2061
BsgI GTGCAG 3 cut(s) 348, 1476, 2397
BshFI GGCC 4 cut(s) 795, 1794, 2320, 2506
BshNI GGYRCC 2 cut(s) 24, 351
BsiSI CCGG 2 cut(s) 541, 2124
BslFI GGGAC 2 cut(s) 1257, 2222
BslI CCNNNNNNNGG 3 cut(s) 569, 1153, 1452
BsmAI GTCTC 4 cut(s) 310, 716, 852, 2385
BsmBI CGTCTC 2 cut(s) 716, 2385
BsmFI GGGAC 2 cut(s) 1257, 2222
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 4 cut(s) 795, 1794, 2320, 2506
Bso31I GGTCTC 1 cut(s) 852
Bsp120I GGGCCC 1 cut(s) 793
Bsp1286I GDGCHC 3 cut(s) 797, 907, 2027
Bsp19I CCATGG 1 cut(s) 938
BspACI CCGC 5 cut(s) 309, 485, 1047, 1315, 2276
BspANI GGCC 4 cut(s) 795, 1794, 2320, 2506
BspCNI CTCAG 5 cut(s) 312, 502, 675, 2038, 2414
BspLI GGNNCC 9 cut(s) 26, 353, 433, 612, 794, 795, 1685, 2043, 2449
BspMI ACCTGC 2 cut(s) 489, 1191
BspT107I GGYRCC 2 cut(s) 24, 351
BspTNI GGTCTC 1 cut(s) 852
BsrBI CCGCTC 1 cut(s) 1047
BsrDI GCAATG 3 cut(s) 420, 816, 1371
BsrFI RCCGGY 1 cut(s) 540
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 5 cut(s) 237, 697, 789, 938, 2451
BssT1I CCWWGG 4 cut(s) 237, 697, 938, 2451
Bst2UI CCWGG 6 cut(s) 551, 564, 648, 723, 790, 1136
Bst4CI ACNGT 7 cut(s) 187, 252, 291, 1203, 1342, 2029, 2396
Bst6I CTCTTC 2 cut(s) 1515, 1677
BstDEI CTNAG 7 cut(s) 81, 299, 489, 662, 1430, 2046, 2401
BstDSI CCRYGG 1 cut(s) 938
BstF5I GGATG 7 cut(s) 139, 481, 559, 1115, 1166, 1376, 2253
BstHHI GCGC 1 cut(s) 1395
BstMAI GTCTC 4 cut(s) 310, 716, 852, 2385
BstMWI GCNNNNNNNGC 7 cut(s) 866, 902, 1373, 1850, 2031, 2282, 2384
BstNI CCWGG 6 cut(s) 551, 564, 648, 723, 790, 1136
BstSCI CCNGG 6 cut(s) 549, 562, 646, 721, 788, 1134
BstSFI CTRYAG 2 cut(s) 144, 510
BstSLI GKGCMC 3 cut(s) 797, 907, 2027
BstX2I RGATCY 4 cut(s) 340, 1683, 2041, 2455
BstXI CCANNNNNNTGG 4 cut(s) 939, 945, 1712, 1730
BstYI RGATCY 4 cut(s) 340, 1683, 2041, 2455
BsuI GTATCC 1 cut(s) 2303
BsuRI GGCC 4 cut(s) 795, 1794, 2320, 2506
BtgI CCRYGG 1 cut(s) 938
BtsCI GGATG 7 cut(s) 139, 481, 559, 1115, 1166, 1376, 2253
BtsI GCAGTG 1 cut(s) 1495
BtsIMutI CAGTG 7 cut(s) 196, 307, 1079, 1111, 1272, 1495, 2025
BveI ACCTGC 2 cut(s) 489, 1191
CfoI GCGC 1 cut(s) 1395
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 6 cut(s) 793, 794, 1088, 1180, 1702, 1793
CseI GACGC 1 cut(s) 1820
Csp6I GTAC 8 cut(s) 25, 352, 519, 567, 641, 1335, 1448, 2050
CviQI GTAC 8 cut(s) 25, 352, 519, 567, 641, 1335, 1448, 2050
DdeI CTNAG 7 cut(s) 81, 299, 489, 662, 1430, 2046, 2401
DriI GACNNNNNGTC 1 cut(s) 2257
Eam1104I CTCTTC 2 cut(s) 1515, 1677
Eam1105I GACNNNNNGTC 1 cut(s) 2257
EarI CTCTTC 2 cut(s) 1515, 1677
Eco130I CCWWGG 4 cut(s) 237, 697, 938, 2451
Eco24I GRGCYC 1 cut(s) 797
Eco31I GGTCTC 1 cut(s) 852
Eco32I GATATC 2 cut(s) 2121, 2139
Eco47I GGWCC 3 cut(s) 1088, 1180, 1702
Eco57I CTGAAG 3 cut(s) 1011, 1506, 1866
EcoO109I RGGNCCY 2 cut(s) 793, 794
EcoRI GAATTC 1 cut(s) 2419
EcoRII CCWGG 6 cut(s) 549, 562, 646, 721, 788, 1134
EcoRV GATATC 2 cut(s) 2121, 2139
EcoT14I CCWWGG 4 cut(s) 237, 697, 938, 2451
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 4 cut(s) 237, 697, 938, 2451
Esp3I CGTCTC 2 cut(s) 716, 2385
FalI AAGNNNNNCTT 2 cut(s) 1413, 1445
FaqI GGGAC 2 cut(s) 1257, 2222
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 2 cut(s) 116, 1989
FokI GGATG 7 cut(s) 146, 488, 566, 1122, 1153, 1363, 2240
FriOI GRGCYC 1 cut(s) 797
FspBI CTAG 7 cut(s) 21, 177, 312, 638, 870, 1457, 1530
FspI TGCGCA 1 cut(s) 1394
GlaI GCGC 1 cut(s) 1394
GsaI CCCAGC 2 cut(s) 577, 2065
GsuI CTGGAG 4 cut(s) 597, 1157, 1578, 1856
HaeIII GGCC 4 cut(s) 795, 1794, 2320, 2506
HapII CCGG 2 cut(s) 541, 2124
HgaI GACGC 1 cut(s) 1820
HhaI GCGC 1 cut(s) 1395
Hin6I GCGC 1 cut(s) 1393
HinP1I GCGC 1 cut(s) 1393
HincII GTYRAC 2 cut(s) 418, 2070
HindII GTYRAC 2 cut(s) 418, 2070
HindIII AAGCTT 1 cut(s) 2283
HinfI GANTC 8 cut(s) 389, 620, 782, 978, 1460, 1815, 2220, 2492
HpaII CCGG 2 cut(s) 541, 2124
HphI GGTGA 4 cut(s) 574, 929, 1124, 1427
Hpy166II GTNNAC 9 cut(s) 117, 268, 418, 1117, 1160, 1576, 1990, 2070, 2089
Hpy8I GTNNAC 9 cut(s) 117, 268, 418, 1117, 1160, 1576, 1990, 2070, 2089
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 6 cut(s) 905, 938, 1035, 1189, 1289, 1883
HpyCH4III ACNGT 7 cut(s) 187, 252, 291, 1203, 1342, 2029, 2396
HpyCH4IV ACGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 7 cut(s) 866, 902, 1373, 1850, 2031, 2282, 2384
HpyF3I CTNAG 7 cut(s) 81, 299, 489, 662, 1430, 2046, 2401
HpySE526I ACGT 1 cut(s) 41
HspAI GCGC 1 cut(s) 1393
KpnI GGTACC 2 cut(s) 28, 355
LmnI GCTCC 6 cut(s) 241, 616, 857, 1483, 1780, 1994
LweI GCATC 8 cut(s) 124, 955, 1385, 1465, 1792, 1840, 2006, 2344
MaeI CTAG 7 cut(s) 21, 177, 312, 638, 870, 1457, 1530
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 7 cut(s) 7, 53, 580, 1433, 1666, 2190, 2396
MbiI CCGCTC 1 cut(s) 1047
MfeI CAATTG 2 cut(s) 459, 1819
MflI RGATCY 4 cut(s) 340, 1683, 2041, 2455
MhlI GDGCHC 3 cut(s) 797, 907, 2027
MlyI GAGTC 4 cut(s) 383, 629, 1469, 2501
MmeI TCCRAC 1 cut(s) 1505
MroXI GAANNNNTTC 1 cut(s) 1872
MslI CAYNNNNRTG 1 cut(s) 1788
MspI CCGG 2 cut(s) 541, 2124
MspR9I CCNGG 6 cut(s) 551, 564, 648, 723, 790, 1136
MunI CAATTG 2 cut(s) 459, 1819
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 6 cut(s) 551, 564, 648, 723, 790, 1136
MwoI GCNNNNNNNGC 7 cut(s) 866, 902, 1373, 1850, 2031, 2282, 2384
NcoI CCATGG 1 cut(s) 938
NdeI CATATG 1 cut(s) 892
NlaIV GGNNCC 9 cut(s) 26, 353, 433, 612, 794, 795, 1685, 2043, 2449
NmuCI GTSAC 3 cut(s) 7, 580, 1433
NsbI TGCGCA 1 cut(s) 1394
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 1872
PfeI GAWTC 4 cut(s) 782, 978, 1815, 2220
PfoI TCCNGGA 1 cut(s) 646
PleI GAGTC 4 cut(s) 383, 628, 1468, 2500
PpsI GAGTC 4 cut(s) 383, 628, 1468, 2500
PshBI ATTAAT 2 cut(s) 318, 1284
Psp6I CCWGG 6 cut(s) 549, 562, 646, 721, 788, 1134
PspFI CCCAGC 2 cut(s) 573, 2061
PspGI CCWGG 6 cut(s) 549, 562, 646, 721, 788, 1134
PspN4I GGNNCC 9 cut(s) 26, 353, 433, 612, 794, 795, 1685, 2043, 2449
PspOMI GGGCCC 1 cut(s) 793
PspPI GGNCC 6 cut(s) 793, 794, 1088, 1180, 1702, 1793
PsuI RGATCY 4 cut(s) 340, 1683, 2041, 2455
RsaI GTAC 8 cut(s) 26, 353, 520, 568, 642, 1336, 1449, 2051
RsaNI GTAC 8 cut(s) 25, 352, 519, 567, 641, 1335, 1448, 2050
RseI CAYNNNNRTG 1 cut(s) 1788
Sau96I GGNCC 6 cut(s) 793, 794, 1088, 1180, 1702, 1793
ScaI AGTACT 2 cut(s) 642, 2051
SchI GAGTC 4 cut(s) 383, 629, 1469, 2501
ScrFI CCNGG 6 cut(s) 551, 564, 648, 723, 790, 1136
SduI GDGCHC 3 cut(s) 797, 907, 2027
SfaNI GCATC 8 cut(s) 124, 955, 1385, 1465, 1792, 1840, 2006, 2344
SfcI CTRYAG 2 cut(s) 144, 510
SinI GGWCC 3 cut(s) 1088, 1180, 1702
SmiMI CAYNNNNRTG 1 cut(s) 1788
SmlI CTYRAG 4 cut(s) 849, 1775, 2111, 2339
SmoI CTYRAG 4 cut(s) 849, 1775, 2111, 2339
SpeI ACTAGT 1 cut(s) 176
SsiI CCGC 5 cut(s) 309, 485, 1047, 1315, 2276
SspI AATATT 2 cut(s) 682, 1324
SspMI CTAG 7 cut(s) 21, 177, 312, 638, 870, 1457, 1530
StyD4I CCNGG 6 cut(s) 549, 562, 646, 721, 788, 1134
StyI CCWWGG 4 cut(s) 237, 697, 938, 2451
TaaI ACNGT 7 cut(s) 187, 252, 291, 1203, 1342, 2029, 2396
TaiI ACGT 1 cut(s) 44
TaqI TCGA 7 cut(s) 233, 247, 1291, 1866, 2199, 2414, 2515
TatI WGTACW 2 cut(s) 640, 2049
TauI GCSGC 2 cut(s) 487, 1317
TfiI GAWTC 4 cut(s) 782, 978, 1815, 2220
TscAI CASTG 7 cut(s) 196, 307, 1086, 1111, 1279, 1502, 2032
TseFI GTSAC 3 cut(s) 7, 580, 1433
Tsp45I GTSAC 3 cut(s) 7, 580, 1433
TspGWI ACGGA 1 cut(s) 2007
TspRI CASTG 7 cut(s) 196, 307, 1086, 1111, 1279, 1502, 2032
VpaK11BI GGWCC 3 cut(s) 1088, 1180, 1702
VspI ATTAAT 2 cut(s) 318, 1284
XapI RAATTY 4 cut(s) 375, 1006, 1652, 2419
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XmiI GTMKAC 2 cut(s) 116, 1989
XmnI GAANNNNTTC 1 cut(s) 1872
XspI CTAG 7 cut(s) 21, 177, 312, 638, 870, 1457, 1530
ZrmI AGTACT 2 cut(s) 642, 2051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.