Rmu_sc0009766.1_g000004

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009766.1
OG0021343
Physical Location & Seq
Reverse (-)
25287 .. 25595
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009766.1_g000004.1.cds

Sequence Viewer

Length: 309 bp
atggagatggggagagactactctggctggtttgtcaagtacaatgttgatcttgatcccttatgcaccacttccccgcagatcctacgtgctatttttgttcttctcactcttgctccggaggaaaatgaagaagatgaggaaagttcatctctgttgctgcatactcctggtaaagtcatctcttataatctgaggaataaaaccttcaaatctattgacttaactcccagggccggtgttgatgattctttttgccgaattgatttgcagaattatcgatatgttgagagtttgggtgttgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

102

Amino Acids

11.65

Weight (kDa)

4.61

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021343)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174961
rosa_multiflora Rmu_sc0001277.1_g000003 Rmu_sc0009766.1_g000004
rosa_samantha Rh2CG635800 Rh2DG686300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 77
AclWI GGATC 2 cut(s) 50, 76
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 169, 230
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 50, 76
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 171, 232
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 171, 232
BmgT120I GGNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 171, 232
Bsa29I ATCGAT 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 230, 231
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 2 cut(s) 171, 232
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 230, 231
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 280
BsiSI CCGG 2 cut(s) 119, 237
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 3 cut(s) 49, 55, 81
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 118
BspPI GGATC 2 cut(s) 50, 76
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 230, 231
BssMI GATC 3 cut(s) 49, 55, 81
Bst2UI CCWGG 2 cut(s) 171, 232
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 194
BstKTI GATC 3 cut(s) 52, 58, 84
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 49, 55, 81
BstNI CCWGG 2 cut(s) 171, 232
BstSCI CCNGG 2 cut(s) 169, 230
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 280
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 2 cut(s) 27, 236
CviKI_1 RGCY 2 cut(s) 27, 236
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 51, 57, 83
DpnII GATC 3 cut(s) 49, 55, 81
EcoRII CCWGG 2 cut(s) 169, 230
FaiI YATR 4 cut(s) 64, 165, 189, 285
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 119, 237
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 119, 237
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 53, 119
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 66, 163, 271
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 49, 55, 81
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 9, 13, 132, 156, 183, 217, 244, 250
Lsp1109I GCAGC 1 cut(s) 147
MaeII ACGT 1 cut(s) 88
MalI GATC 3 cut(s) 51, 57, 83
MboI GATC 3 cut(s) 49, 55, 81
MboII GAAGA 3 cut(s) 95, 143, 146
MflI RGATCY 1 cut(s) 81
MluCI AATT 2 cut(s) 261, 274
MnlI CCTC 3 cut(s) 115, 133, 189
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 224
MspI CCGG 2 cut(s) 119, 237
MspR9I CCNGG 2 cut(s) 171, 232
MvaI CCWGG 2 cut(s) 171, 232
NdeII GATC 3 cut(s) 49, 55, 81
PasI CCCWGGG 1 cut(s) 231
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 89
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 169, 230
PspGI CCWGG 2 cut(s) 169, 230
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 49, 55, 81
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 171, 232
SetI ASST 2 cut(s) 91, 209
Sse9I AATT 2 cut(s) 261, 274
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 169, 230
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 261, 274
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 138, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.