Rh2DG686300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
90440997 .. 90441281
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG686300.1

Sequence Viewer

Length: 285 bp
ATGACTGTGAAAATCGAATTGGGGTTTTCAGTAATCCCCAAGAAATCGATTTGGGGTTTTCGGTTTCTGGGAGATTTAGGGGTTTCTGTGAAATCGAATTGGGGTTTTCGATCTCTGGGAGATTTGGGTATTACTGTGAAAATCAAATTGGGCTTTTCAGTTAATCCCCAAGAAATCGAATTGAGGTTTTCGGTCTCGTCGGGGAGATTTGGGGATTCTGCAATGGAATTAGGGTTCGGTGTCTGGGAGATTGGGGATTTCTGGGAAATCGAATTGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

5.33

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021343)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174961
rosa_multiflora Rmu_sc0001277.1_g000003 Rmu_sc0009766.1_g000004
rosa_samantha Rh2CG635800 Rh2DG686300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 131, 163
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
Alw26I GTCTC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 47
BseMI GCAATG 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 110
BspDI ATCGAT 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 228
BssMI GATC 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 7, 136
BstKTI GATC 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 47
BsuTUI ATCGAT 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 47
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 199
HinfI GANTC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 7, 136
HpyCH4V TGCA 1 cut(s) 221
Kzo9I GATC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 53, 101, 229, 247
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MluCI AATT 6 cut(s) 17, 97, 146, 179, 227, 272
MnlI CCTC 1 cut(s) 177
MseI TTAA 1 cut(s) 162
NdeII GATC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 1 cut(s) 110
SetI ASST 1 cut(s) 188
SgeI CNNG 8 cut(s) 52, 80, 128, 182, 208, 213, 256, 274
Sse9I AATT 6 cut(s) 17, 97, 146, 179, 227, 272
TaaI ACNGT 2 cut(s) 7, 136
TaqI TCGA 6 cut(s) 15, 47, 95, 109, 177, 270
TaqII GACCGA 1 cut(s) 181
TasI AATT 6 cut(s) 17, 97, 146, 179, 227, 272
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.