Rmu_sc0009775.1_g000006
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009775.1
Physical Location & Seq
Forward (+)
27286 .. 30299
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009775.1_g000006.1.cds

Sequence Viewer

Length: 1266 bp
atgagtggtgggatttttacaagtgtgaaagggcccctcattctgcagcgcgccactgtggctttgggcactgtgaatgagattgagaccatcactagcaattttacgagtgctccctctgctgctgattcagtgccggagacgagcatgggcatggcttcaccttcatgtgggctcagtatctgtgatgggaacattccttgcttgccaatgttgagctctgctgcaaagagcgtggcttcttacggggatagaatccacgaggactctgagaaccagcctcacaacatgccttcaactcttcagacagagggtgagatattgctatcccccaacttaaagagcttcgtcctcagtgaactcaaagcagccactcaaaattttcgtcatatggtgggtgatggttttgggccttttggcttagtcttcaagggtcatattgatgagaattcattaacagctgtcaagccttacacgggcatggttattgctgtgaagtggcttcaccgagaatatttcctggatcaggcggaatggttgacagaaattcatcacattggaaagctatgccacccaaatcttgtgaagttgattggttattgcttagaggatgatcaccggctgctggtgtatgaatttttccctcctggaagcttggataattatctgttcagaaggaatacttcttttcaaccactttcatgggatcttcgtttgaaaattgcccttggtgctgccaagggtttagaatttcttcacactgatgaggcaaaagtgatatatcgtgactttagaacttctaatgtcctgctggattcacactacaacgtcaaactctttgatttgagtttggctaaggaccggccagcaggtgatagaagccatgactcaacaaggaccagggagccatattatgcagctcccgagtatctggccacaggtcaattaaccaccaaaactgatgtgtatagttttggggtttttatgctcgaaatgttgtgcggaagacgagctgtggacaagaaccgaccaataggggaacatagcttagttgaatgggccagacctcaccttgccagcaaacgcagagttctccaaatcttggatgatcatattgaaggccagtgctcagttgctggagctctgaaagctgctaaccttgcgtttctatgcttatcactaaatcccaagtttaggccaaacatgagtgatgtggtaaaagcattggagcagcttcagggttccattgacatgaagggtttgtga
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

46.65

Weight (kDa)

6.31

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0009775.1_g000006
rosa_roxburghii Rroxscaffold_4G00289370
rosa_wichuraiana Rw1G030490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 860
Acc36I ACCTGC 1 cut(s) 860
AccB7I CCANNNNNTGG 1 cut(s) 1102
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 530, 1002
AclWI GGATC 2 cut(s) 531, 714
AcoI YGGCCR 2 cut(s) 863, 933
AcsI RAATTY 5 cut(s) 379, 448, 546, 635, 749
AcuI CTGAAG 2 cut(s) 287, 1220
AfiI CCNNNNNNNGG 6 cut(s) 170, 476, 526, 625, 1102, 1194
AgsI TTSAA 6 cut(s) 297, 430, 692, 718, 1055, 1118
AjnI CCWGG 3 cut(s) 519, 646, 899
Alw21I GWGCWC 4 cut(s) 115, 221, 1130, 1144
Alw26I GTCTC 2 cut(s) 80, 134
AlwI GGATC 2 cut(s) 531, 714
AlwNI CAGNNNCTG 2 cut(s) 183, 1136
Ama87I CYCGRG 1 cut(s) 923
AoxI GGCC 7 cut(s) 32, 410, 863, 933, 1059, 1120, 1196
ApaI GGGCCC 1 cut(s) 36
ApeKI GCWGC 9 cut(s) 46, 122, 224, 368, 622, 734, 917, 1151, 1231
ApoI RAATTY 5 cut(s) 379, 448, 546, 635, 749
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 2 cut(s) 51, 53
AspS9I GGNCC 6 cut(s) 32, 33, 410, 859, 897, 1059
AsuHPI GGTGA 7 cut(s) 153, 326, 410, 497, 608, 884, 1061
AvaI CYCGRG 1 cut(s) 923
AvaII GGWCC 2 cut(s) 859, 897
BaeGI GKGCMC 2 cut(s) 36, 71
BalI TGGCCA 1 cut(s) 935
BanII GRGCYC 4 cut(s) 36, 177, 221, 1144
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 418, 1012
Bbv12I GWGCWC 4 cut(s) 115, 221, 1130, 1144
BbvI GCAGC 9 cut(s) 58, 109, 211, 380, 609, 721, 929, 1138, 1243
BccI CCATC 3 cut(s) 98, 182, 395
BciT130I CCWGG 3 cut(s) 521, 648, 901
BclI TGATCA 2 cut(s) 613, 1108
BcoDI GTCTC 2 cut(s) 80, 134
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 860
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 9 cut(s) 47, 123, 225, 369, 623, 735, 918, 1152, 1232
BlsI GCNGC 9 cut(s) 48, 124, 226, 370, 624, 736, 919, 1153, 1233
Bme1390I CCNGG 3 cut(s) 521, 648, 901
Bme18I GGWCC 2 cut(s) 859, 897
BmeT110I CYCGRG 1 cut(s) 923
BmgT120I GGNCC 6 cut(s) 32, 33, 410, 859, 897, 1059
BmiI GGNNCC 4 cut(s) 34, 35, 906, 1243
BmrFI CCNGG 3 cut(s) 521, 648, 901
BpiI GAAGAC 2 cut(s) 418, 1012
BpmI CTGGAG 1 cut(s) 1158
Bpu10I CCTNAGC 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 727, 738, 900
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 476, 526, 625, 1102, 1194
Bse118I RCCGGY 2 cut(s) 618, 861
Bse1I ACTGG 1 cut(s) 1123
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 3 cut(s) 521, 648, 901
BseDI CCNNGG 3 cut(s) 727, 738, 900
BseGI GGATG 2 cut(s) 616, 1111
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 6 cut(s) 170, 476, 526, 625, 1102, 1194
BseMII CTCAG 4 cut(s) 190, 261, 367, 1143
BseNI ACTGG 1 cut(s) 1123
BsePI GCGCGC 1 cut(s) 49
BseSI GKGCMC 2 cut(s) 36, 71
BseXI GCAGC 9 cut(s) 58, 109, 211, 380, 609, 721, 929, 1138, 1243
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 7 cut(s) 34, 412, 865, 935, 1061, 1122, 1198
BsiHKAI GWGCWC 4 cut(s) 115, 221, 1130, 1144
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 3 cut(s) 137, 619, 862
BslI CCNNNNNNNGG 6 cut(s) 170, 476, 526, 625, 1102, 1194
BsmAI GTCTC 2 cut(s) 80, 134
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 7 cut(s) 34, 412, 865, 935, 1061, 1122, 1198
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 923
Bsp120I GGGCCC 1 cut(s) 32
Bsp1286I GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1130, 1144
Bsp143I GATC 4 cut(s) 523, 613, 706, 1108
BspACI CCGC 2 cut(s) 530, 1002
BspANI GGCC 7 cut(s) 34, 412, 865, 935, 1061, 1122, 1198
BspCNI CTCAG 4 cut(s) 189, 262, 366, 1142
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 34, 35, 906, 1243
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 860
BspPI GGATC 2 cut(s) 531, 714
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 618, 861
BsrI ACTGG 1 cut(s) 1123
BssAI RCCGGY 2 cut(s) 618, 861
BssECI CCNNGG 3 cut(s) 727, 738, 900
BssHII GCGCGC 1 cut(s) 49
BssMI GATC 4 cut(s) 523, 613, 706, 1108
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 2 cut(s) 727, 738
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 521, 648, 901
Bst4CI ACNGT 2 cut(s) 58, 73
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 51, 206, 867, 1078
BstDEI CTNAG 8 cut(s) 176, 270, 353, 421, 604, 855, 1048, 1129
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 616, 1111
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 51, 53
BstKTI GATC 4 cut(s) 526, 616, 709, 1111
BstMAI GTCTC 2 cut(s) 80, 134
BstMBI GATC 4 cut(s) 523, 613, 706, 1108
BstMWI GCNNNNNNNGC 5 cut(s) 59, 119, 731, 1148, 1160
BstNI CCWGG 3 cut(s) 521, 648, 901
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 519, 646, 899
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 2 cut(s) 36, 71
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 9 cut(s) 58, 109, 211, 380, 609, 721, 929, 1138, 1243
BstV2I GAAGAC 2 cut(s) 418, 1012
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 7 cut(s) 34, 412, 865, 935, 1061, 1122, 1198
BtsCI GGATG 2 cut(s) 616, 1111
BtsIMutI CAGTG 6 cut(s) 54, 69, 138, 361, 759, 1130
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 4 cut(s) 51, 206, 867, 1078
CaiI CAGNNNCTG 2 cut(s) 183, 1136
CfoI GCGC 2 cut(s) 51, 53
Cfr10I RCCGGY 2 cut(s) 618, 861
Cfr13I GGNCC 6 cut(s) 32, 33, 410, 859, 897, 1059
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 9 cut(s) 148, 154, 168, 289, 481, 702, 884, 1204, 1252
DdeI CTNAG 8 cut(s) 176, 270, 353, 421, 604, 855, 1048, 1129
DpnI GATC 4 cut(s) 525, 615, 708, 1110
DpnII GATC 4 cut(s) 523, 613, 706, 1108
EaeI YGGCCR 2 cut(s) 863, 933
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 545
Ecl136II GAGCTC 2 cut(s) 219, 1142
Eco130I CCWWGG 2 cut(s) 727, 738
Eco24I GRGCYC 4 cut(s) 36, 177, 221, 1144
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 859, 897
Eco53kI GAGCTC 2 cut(s) 219, 1142
Eco57I CTGAAG 2 cut(s) 287, 1220
Eco88I CYCGRG 1 cut(s) 923
EcoICRI GAGCTC 2 cut(s) 219, 1142
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 2 cut(s) 32, 33
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 3 cut(s) 519, 646, 899
EcoT14I CCWWGG 2 cut(s) 727, 738
EcoT38I GRGCYC 4 cut(s) 36, 177, 221, 1144
ErhI CCWWGG 2 cut(s) 727, 738
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 9 cut(s) 151, 157, 171, 292, 484, 705, 887, 1207, 1255
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FatI CATG 9 cut(s) 147, 153, 167, 288, 480, 701, 883, 1203, 1251
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 2 cut(s) 613, 1108
Fnu4HI GCNGC 9 cut(s) 47, 123, 225, 369, 623, 735, 918, 1152, 1232
FokI GGATG 2 cut(s) 623, 1118
FriOI GRGCYC 4 cut(s) 36, 177, 221, 1144
Fsp4HI GCNGC 9 cut(s) 47, 123, 225, 369, 623, 735, 918, 1152, 1232
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 50, 52
GluI GCNGC 9 cut(s) 47, 123, 225, 369, 623, 735, 918, 1152, 1232
GsuI CTGGAG 1 cut(s) 1158
HaeIII GGCC 7 cut(s) 34, 412, 865, 935, 1061, 1122, 1198
HapII CCGG 3 cut(s) 137, 619, 862
HhaI GCGC 2 cut(s) 51, 53
Hin1II CATG 9 cut(s) 151, 157, 171, 292, 484, 705, 887, 1207, 1255
Hin6I GCGC 2 cut(s) 49, 51
HinP1I GCGC 2 cut(s) 49, 51
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 5 cut(s) 128, 255, 266, 815, 887
HpaII CCGG 3 cut(s) 137, 619, 862
HphI GGTGA 7 cut(s) 153, 326, 410, 497, 608, 884, 1061
Hpy166II GTNNAC 3 cut(s) 359, 540, 1018
Hpy188I TCNGA 4 cut(s) 271, 306, 674, 1146
Hpy188III TCNNGA 2 cut(s) 785, 923
Hpy8I GTNNAC 3 cut(s) 359, 540, 1018
HpyAV CCTTC 5 cut(s) 174, 303, 669, 1112, 1249
HpyCH4III ACNGT 2 cut(s) 58, 73
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 3 cut(s) 46, 227, 917
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 119, 731, 1148, 1160
HpyF3I CTNAG 8 cut(s) 176, 270, 353, 421, 604, 855, 1048, 1129
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 9 cut(s) 151, 157, 171, 292, 484, 705, 887, 1207, 1255
HspAI GCGC 2 cut(s) 49, 51
Ksp22I TGATCA 2 cut(s) 613, 1108
Kzo9I GATC 4 cut(s) 523, 613, 706, 1108
LmnI GCTCC 5 cut(s) 118, 904, 925, 1139, 1228
Lsp1109I GCAGC 9 cut(s) 58, 109, 211, 380, 609, 721, 929, 1138, 1243
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 785
MalI GATC 4 cut(s) 525, 615, 708, 1110
MboI GATC 4 cut(s) 523, 613, 706, 1108
MboII GAAGA 5 cut(s) 293, 418, 701, 746, 1017
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1130, 1144
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 9 cut(s) 100, 379, 448, 546, 635, 661, 720, 749, 944
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 2 cut(s) 260, 881
Mox20I TGGCCA 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 1 cut(s) 935
MseI TTAA 3 cut(s) 338, 455, 947
MslI CAYNNNNRTG 7 cut(s) 152, 166, 441, 479, 700, 762, 1250
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 3 cut(s) 137, 619, 862
MspR9I CCNGG 3 cut(s) 521, 648, 901
MvaI CCWGG 3 cut(s) 521, 648, 901
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 5 cut(s) 59, 119, 731, 1148, 1160
NdeI CATATG 1 cut(s) 390
NdeII GATC 4 cut(s) 523, 613, 706, 1108
NlaIII CATG 9 cut(s) 151, 157, 171, 292, 484, 705, 887, 1207, 1255
NlaIV GGNNCC 4 cut(s) 34, 35, 906, 1243
NmuCI GTSAC 1 cut(s) 785
NspI RCATGY 1 cut(s) 292
PaqCI CACCTGC 1 cut(s) 860
PauI GCGCGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 128, 255, 815
PflMI CCANNNNNTGG 1 cut(s) 1102
PfoI TCCNGGA 2 cut(s) 519, 646
PkrI GCNGC 9 cut(s) 48, 124, 226, 370, 624, 736, 919, 1153, 1233
PleI GAGTC 2 cut(s) 260, 881
PpsI GAGTC 2 cut(s) 260, 881
Psp124BI GAGCTC 2 cut(s) 221, 1144
Psp6I CCWGG 3 cut(s) 519, 646, 899
PspGI CCWGG 3 cut(s) 519, 646, 899
PspN4I GGNNCC 4 cut(s) 34, 35, 906, 1243
PspOMI GGGCCC 1 cut(s) 32
PspPI GGNCC 6 cut(s) 32, 33, 410, 859, 897, 1059
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 2 cut(s) 183, 1136
PsuI RGATCY 1 cut(s) 706
PteI GCGCGC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 461
RseI CAYNNNNRTG 7 cut(s) 152, 166, 441, 479, 700, 762, 1250
SacI GAGCTC 2 cut(s) 221, 1144
SaqAI TTAA 3 cut(s) 338, 455, 947
SatI GCNGC 9 cut(s) 47, 123, 225, 369, 623, 735, 918, 1152, 1232
Sau3AI GATC 4 cut(s) 523, 613, 706, 1108
Sau96I GGNCC 6 cut(s) 32, 33, 410, 859, 897, 1059
SchI GAGTC 2 cut(s) 260, 881
ScrFI CCNGG 3 cut(s) 521, 648, 901
SduI GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1130, 1144
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 2 cut(s) 859, 897
SmiMI CAYNNNNRTG 7 cut(s) 152, 166, 441, 479, 700, 762, 1250
Sse9I AATT 9 cut(s) 100, 379, 448, 546, 635, 661, 720, 749, 944
SsiI CCGC 2 cut(s) 530, 1002
SspI AATATT 1 cut(s) 515
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 2 cut(s) 221, 1144
StyD4I CCNGG 3 cut(s) 519, 646, 899
StyI CCWWGG 2 cut(s) 727, 738
TaaI ACNGT 2 cut(s) 58, 73
TaiI ACGT 1 cut(s) 831
TaqI TCGA 1 cut(s) 990
TasI AATT 9 cut(s) 100, 379, 448, 546, 635, 661, 720, 749, 944
TfiI GAWTC 3 cut(s) 128, 255, 815
Tru1I TTAA 3 cut(s) 338, 455, 947
Tru9I TTAA 3 cut(s) 338, 455, 947
TscAI CASTG 6 cut(s) 61, 76, 138, 361, 766, 1130
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 9 cut(s) 46, 122, 224, 368, 622, 734, 917, 1151, 1231
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 5 cut(s) 156, 441, 539, 648, 690
TspRI CASTG 6 cut(s) 61, 76, 138, 361, 766, 1130
Van91I CCANNNNNTGG 1 cut(s) 1102
VpaK11BI GGWCC 2 cut(s) 859, 897
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 5 cut(s) 379, 448, 546, 635, 749
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.