Rroxscaffold_4G00289370
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
9999958 .. 10004117
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289370.1

Sequence Viewer

Length: 1269 bp
ATGACTGGTGGGATTTTTACAAGTGTGAAAGGGCCCCTCATTCTGCAGCGCTCCACTGTGGCTTTGGGCACTGTGAATGAGATTGAGACCATCACTAGCAATTTTACTAGTGCTCCCCCAGCTGCTGATTCAGTGCCGGAGACGAGCATGGGCATGGCTTCACCTTCATATGGGCTCAGTATCTGTGATGGGAACATTCCTTGCTTGCCAATGTTGAGCTCTGCTGCAAAGCAGAGCGTGGCTTCTTACGGGGATAGAATCCACGAGGACTATGAGAACCAGCCTCACAACATGCCTTCAACTCTTCAGACAGAGGGTGAGATATTGCTATCCCCCAACTTAAAGAGCTTCGTCCTCAGTGAACTCAAAGCAGCCACTCAAAATTTTCGTCATATGGTGGGTGATGGTTTTGGGCCTTTTGGCTTAGTCTTCAAGGGTCATATTGATGAGAATTCATTAACAGCTGTCAAGCCTTACACGGGCATGGTTATTGCTGTGAAGTGGGTACACCGAGAAGATTTCCTGGATCAGGCGGAATGGTTGACAGAAATTCATTACATTGGAAAGCTATGCCACCCAAATCTTGTGAAGTTGATTGGTTATTGCTTAGAGGATGATCACCGGCTGCTGGTGTATGAATTTTTCCCTCGTGGAAGCTTGGATAATTATCTGTTCAGAAGGAATACTTCTTTTCAACCACTTTCATGGGATCTTCGTTTGAAAATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCACACTGATGAGGCAAAAGTGATATATCGTGACTTTAGAACTTCTAATGTCCTGCTGGATTCACACTACAACGTCAAACTCTTTGATTTGAGTTTGTCTAAGGACCGGCCAGCAAGTGATAGAAGCCATGACTCAACAAGGGCCAGGGAGCCATATTATGCAGCTCCCGAGTATCTGGCCACAGGTCAATTAACCACCAAAACTGATGTGTATAGTTTTGGGGTTTTTATGCTCGAAATGTTGTGTGGAAGACGAGCTGTGGACAAGAACCGACCAACAGGGGAACATAGCTTAGTTGAATGGGCCAGACCTCACCTTGCCAGCAAACGCAGAGTTCTCCGAATCTTGGATGATCGTATTGAAGGCCAGTGCTCAGTTGCTGGAGCTCTGAAAGCTGCTAACCTTGCGTTTCTATGCTTATCACTAAATCCCAAGTTTAGGCCAAACATGAGTGATGTGGTAAAAGCATTGGAGCAGCTTCAGGGTTCCATTGACATGAAGGGTTTGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

422

Amino Acids

46.97

Weight (kDa)

6.68

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 136 - 410 3.8e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 155 - 408 1.6e-34 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0009775.1_g000006
rosa_roxburghii Rroxscaffold_4G00289370
rosa_wichuraiana Rw1G030490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 533
AclWI GGATC 2 cut(s) 534, 717
AcoI YGGCCR 2 cut(s) 866, 936
AcsI RAATTY 4 cut(s) 382, 451, 549, 638
AcuI CTGAAG 2 cut(s) 290, 1223
AfaI GTAC 1 cut(s) 507
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 6 cut(s) 170, 479, 529, 628, 1105, 1197
AgsI TTSAA 6 cut(s) 300, 433, 695, 721, 1058, 1121
AhlI ACTAGT 1 cut(s) 107
AjnI CCWGG 2 cut(s) 522, 902
Alw21I GWGCWC 4 cut(s) 115, 221, 1133, 1147
Alw26I GTCTC 2 cut(s) 80, 134
AlwI GGATC 2 cut(s) 534, 717
AlwNI CAGNNNCTG 3 cut(s) 125, 183, 1139
Ama87I CYCGRG 1 cut(s) 926
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 8 cut(s) 32, 413, 866, 900, 936, 1062, 1123, 1199
ApaI GGGCCC 1 cut(s) 36
ApeKI GCWGC 9 cut(s) 46, 122, 224, 371, 625, 737, 920, 1154, 1234
ApoI RAATTY 4 cut(s) 382, 451, 549, 638
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 6 cut(s) 32, 33, 413, 862, 900, 1062
AsuHPI GGTGA 5 cut(s) 153, 329, 413, 611, 1064
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 1 cut(s) 862
BaeGI GKGCMC 2 cut(s) 36, 71
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 4 cut(s) 36, 177, 221, 1147
BauI CACGAG 2 cut(s) 263, 648
BbsI GAAGAC 2 cut(s) 421, 1015
Bbv12I GWGCWC 4 cut(s) 115, 221, 1133, 1147
BbvI GCAGC 9 cut(s) 58, 109, 211, 383, 612, 724, 932, 1141, 1246
BccI CCATC 3 cut(s) 98, 182, 398
BciT130I CCWGG 2 cut(s) 524, 904
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 80, 134
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 3 cut(s) 96, 108, 749
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 9 cut(s) 47, 123, 225, 372, 626, 738, 921, 1155, 1235
BlsI GCNGC 9 cut(s) 48, 124, 226, 373, 627, 739, 922, 1156, 1236
Bme1390I CCNGG 2 cut(s) 524, 904
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 6 cut(s) 32, 33, 413, 862, 900, 1062
BmiI GGNNCC 4 cut(s) 34, 35, 909, 1246
BmrFI CCNGG 2 cut(s) 524, 904
BpiI GAAGAC 2 cut(s) 421, 1015
BpmI CTGGAG 1 cut(s) 1161
BsaBI GATNNNNATC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 730, 741, 903
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 479, 529, 628, 1105, 1197
Bse118I RCCGGY 2 cut(s) 621, 864
Bse1I ACTGG 2 cut(s) 10, 1126
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 2 cut(s) 524, 904
BseDI CCNNGG 3 cut(s) 730, 741, 903
BseGI GGATG 2 cut(s) 619, 1114
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 6 cut(s) 170, 479, 529, 628, 1105, 1197
BseMII CTCAG 3 cut(s) 190, 370, 1146
BseNI ACTGG 2 cut(s) 10, 1126
BseSI GKGCMC 2 cut(s) 36, 71
BseXI GCAGC 9 cut(s) 58, 109, 211, 383, 612, 724, 932, 1141, 1246
BseYI CCCAGC 1 cut(s) 118
BshFI GGCC 8 cut(s) 34, 415, 868, 902, 938, 1064, 1125, 1201
BsiHKAI GWGCWC 4 cut(s) 115, 221, 1133, 1147
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 3 cut(s) 137, 622, 865
BslI CCNNNNNNNGG 6 cut(s) 170, 479, 529, 628, 1105, 1197
BsmAI GTCTC 2 cut(s) 80, 134
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 8 cut(s) 34, 415, 868, 902, 938, 1064, 1125, 1201
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 926
Bsp120I GGGCCC 1 cut(s) 32
Bsp1286I GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1133, 1147
Bsp143I GATC 4 cut(s) 526, 616, 709, 1111
BspACI CCGC 1 cut(s) 533
BspANI GGCC 8 cut(s) 34, 415, 868, 902, 938, 1064, 1125, 1201
BspCNI CTCAG 3 cut(s) 189, 369, 1145
BspLI GGNNCC 4 cut(s) 34, 35, 909, 1246
BspMAI CTGCAG 1 cut(s) 48
BspPI GGATC 2 cut(s) 534, 717
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 621, 864
BsrI ACTGG 2 cut(s) 10, 1126
BssAI RCCGGY 2 cut(s) 621, 864
BssECI CCNNGG 3 cut(s) 730, 741, 903
BssMI GATC 4 cut(s) 526, 616, 709, 1111
BssSI CACGAG 2 cut(s) 263, 648
BssT1I CCWWGG 2 cut(s) 730, 741
Bst2BI CACGAG 2 cut(s) 263, 648
Bst2UI CCWGG 2 cut(s) 524, 904
Bst4CI ACNGT 2 cut(s) 58, 73
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 206, 870, 1081
BstDEI CTNAG 7 cut(s) 176, 356, 424, 607, 858, 1051, 1132
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 619, 1114
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 4 cut(s) 529, 619, 712, 1114
BstMAI GTCTC 2 cut(s) 80, 134
BstMBI GATC 4 cut(s) 526, 616, 709, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 119, 734, 1151, 1163
BstNI CCWGG 2 cut(s) 524, 904
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 2 cut(s) 522, 902
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 2 cut(s) 36, 71
BstV1I GCAGC 9 cut(s) 58, 109, 211, 383, 612, 724, 932, 1141, 1246
BstV2I GAAGAC 2 cut(s) 421, 1015
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 705
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 8 cut(s) 34, 415, 868, 902, 938, 1064, 1125, 1201
BtsCI GGATG 2 cut(s) 619, 1114
BtsIMutI CAGTG 6 cut(s) 54, 69, 138, 364, 762, 1133
Cac8I GCNNGC 3 cut(s) 206, 870, 1081
CaiI CAGNNNCTG 3 cut(s) 125, 183, 1139
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 2 cut(s) 621, 864
Cfr13I GGNCC 6 cut(s) 32, 33, 413, 862, 900, 1062
Csp6I GTAC 1 cut(s) 506
CviAII CATG 8 cut(s) 148, 154, 292, 484, 705, 887, 1207, 1255
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 7 cut(s) 176, 356, 424, 607, 858, 1051, 1132
DpnI GATC 4 cut(s) 528, 618, 711, 1113
DpnII GATC 4 cut(s) 526, 616, 709, 1111
EaeI YGGCCR 2 cut(s) 866, 936
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 548
Ecl136II GAGCTC 2 cut(s) 219, 1145
Eco130I CCWWGG 2 cut(s) 730, 741
Eco24I GRGCYC 4 cut(s) 36, 177, 221, 1147
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 862
Eco47III AGCGCT 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 219, 1145
Eco57I CTGAAG 2 cut(s) 290, 1223
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 2 cut(s) 219, 1145
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoO109I RGGNCCY 2 cut(s) 32, 33
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 522, 902
EcoT14I CCWWGG 2 cut(s) 730, 741
EcoT38I GRGCYC 4 cut(s) 36, 177, 221, 1147
ErhI CCWWGG 2 cut(s) 730, 741
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 8 cut(s) 151, 157, 295, 487, 708, 890, 1210, 1258
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FatI CATG 8 cut(s) 147, 153, 291, 483, 704, 886, 1206, 1254
FauNDI CATATG 2 cut(s) 169, 393
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 9 cut(s) 47, 123, 225, 372, 626, 738, 921, 1155, 1235
FokI GGATG 2 cut(s) 626, 1121
FriOI GRGCYC 4 cut(s) 36, 177, 221, 1147
Fsp4HI GCNGC 9 cut(s) 47, 123, 225, 372, 626, 738, 921, 1155, 1235
FspBI CTAG 3 cut(s) 96, 108, 749
GlaI GCGC 1 cut(s) 50
GluI GCNGC 9 cut(s) 47, 123, 225, 372, 626, 738, 921, 1155, 1235
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 1161
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 8 cut(s) 34, 415, 868, 902, 938, 1064, 1125, 1201
HapII CCGG 3 cut(s) 137, 622, 865
HhaI GCGC 1 cut(s) 51
Hin1II CATG 8 cut(s) 151, 157, 295, 487, 708, 890, 1210, 1258
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HindIII AAGCTT 1 cut(s) 655
HinfI GANTC 5 cut(s) 128, 258, 818, 890, 1101
HpaII CCGG 3 cut(s) 137, 622, 865
HphI GGTGA 5 cut(s) 153, 329, 413, 611, 1064
Hpy166II GTNNAC 4 cut(s) 362, 508, 543, 1021
Hpy188I TCNGA 4 cut(s) 309, 677, 1100, 1149
Hpy188III TCNNGA 2 cut(s) 788, 926
Hpy8I GTNNAC 4 cut(s) 362, 508, 543, 1021
HpyAV CCTTC 5 cut(s) 174, 306, 672, 1115, 1252
HpyCH4III ACNGT 2 cut(s) 58, 73
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 3 cut(s) 46, 227, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 734, 1151, 1163
HpyF3I CTNAG 7 cut(s) 176, 356, 424, 607, 858, 1051, 1132
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 8 cut(s) 151, 157, 295, 487, 708, 890, 1210, 1258
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 4 cut(s) 526, 616, 709, 1111
LmnI GCTCC 6 cut(s) 56, 118, 907, 928, 1142, 1231
Lsp1109I GCAGC 9 cut(s) 58, 109, 211, 383, 612, 724, 932, 1141, 1246
MaeI CTAG 3 cut(s) 96, 108, 749
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 1 cut(s) 788
MalI GATC 4 cut(s) 528, 618, 711, 1113
MboI GATC 4 cut(s) 526, 616, 709, 1111
MboII GAAGA 6 cut(s) 296, 421, 527, 704, 749, 1020
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1133, 1147
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 8 cut(s) 100, 382, 451, 549, 638, 664, 723, 947
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 884
MnlI CCTC 9 cut(s) 47, 259, 294, 307, 365, 604, 657, 763, 1080
Mox20I TGGCCA 1 cut(s) 938
MscI TGGCCA 1 cut(s) 938
MseI TTAA 3 cut(s) 341, 458, 950
MslI CAYNNNNRTG 6 cut(s) 152, 444, 482, 703, 765, 1253
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 122, 464
MspI CCGG 3 cut(s) 137, 622, 865
MspR9I CCNGG 2 cut(s) 524, 904
MvaI CCWGG 2 cut(s) 524, 904
MwoI GCNNNNNNNGC 4 cut(s) 119, 734, 1151, 1163
NdeI CATATG 2 cut(s) 169, 393
NdeII GATC 4 cut(s) 526, 616, 709, 1111
NlaIII CATG 8 cut(s) 151, 157, 295, 487, 708, 890, 1210, 1258
NlaIV GGNNCC 4 cut(s) 34, 35, 909, 1246
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 1 cut(s) 295
PfeI GAWTC 4 cut(s) 128, 258, 818, 1101
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 9 cut(s) 48, 124, 226, 373, 627, 739, 922, 1156, 1236
PleI GAGTC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 884
Psp124BI GAGCTC 2 cut(s) 221, 1147
Psp6I CCWGG 2 cut(s) 522, 902
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 522, 902
PspN4I GGNNCC 4 cut(s) 34, 35, 909, 1246
PspOMI GGGCCC 1 cut(s) 32
PspPI GGNCC 6 cut(s) 32, 33, 413, 862, 900, 1062
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 3 cut(s) 125, 183, 1139
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 2 cut(s) 122, 464
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 6 cut(s) 152, 444, 482, 703, 765, 1253
SacI GAGCTC 2 cut(s) 221, 1147
SaqAI TTAA 3 cut(s) 341, 458, 950
SatI GCNGC 9 cut(s) 47, 123, 225, 372, 626, 738, 921, 1155, 1235
Sau3AI GATC 4 cut(s) 526, 616, 709, 1111
Sau96I GGNCC 6 cut(s) 32, 33, 413, 862, 900, 1062
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 2 cut(s) 524, 904
SduI GDGCHC 7 cut(s) 36, 71, 115, 177, 221, 1133, 1147
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 862
SmiMI CAYNNNNRTG 6 cut(s) 152, 444, 482, 703, 765, 1253
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 8 cut(s) 100, 382, 451, 549, 638, 664, 723, 947
SsiI CCGC 1 cut(s) 533
SspMI CTAG 3 cut(s) 96, 108, 749
SstI GAGCTC 2 cut(s) 221, 1147
StyD4I CCNGG 2 cut(s) 522, 902
StyI CCWWGG 2 cut(s) 730, 741
TaaI ACNGT 2 cut(s) 58, 73
TaiI ACGT 1 cut(s) 834
TaqI TCGA 1 cut(s) 993
TasI AATT 8 cut(s) 100, 382, 451, 549, 638, 664, 723, 947
TfiI GAWTC 4 cut(s) 128, 258, 818, 1101
Tru1I TTAA 3 cut(s) 341, 458, 950
Tru9I TTAA 3 cut(s) 341, 458, 950
TscAI CASTG 6 cut(s) 61, 76, 138, 364, 769, 1133
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 9 cut(s) 46, 122, 224, 371, 625, 737, 920, 1154, 1234
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 5 cut(s) 156, 444, 542, 651, 693
TspRI CASTG 6 cut(s) 61, 76, 138, 364, 769, 1133
VpaK11BI GGWCC 1 cut(s) 862
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 4 cut(s) 382, 451, 549, 638
XceI RCATGY 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 3 cut(s) 96, 108, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.