Rw1G030490
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0025636
Physical Location & Seq
Forward (+)
58437486 .. 58439197
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030490.1

Sequence Viewer

Length: 876 bp
ATGGTGGGTGATGGTTTTGGGCCTTTTGGCTTAGTCTTCAAGGGTCATATTGATGAGAATTCATTAACAGCTGTCAAGCCTTACACGGGCATGGTTATTGCTGTGAAGTGGCTTCACCGAGAAGATTTCCTGGATCAGGCGGAATGGTTGACAGAAATTCATCACATTGGAAAGCTATGCCACCCAAATCTTGTGAAGTTGATTGGTTATTGCTTAGAGGATGATCACCGGCTGCTGGTGTATGAATTTTTCCCTCCTGGAAGCTTGGATAATTATCTGTTCAGAAGGAATACTTCTTTTCAACCACTTTCATGGGATCTTCGTTTGAAAATTGCCCTTGGTGCTGCCAAGGGTTTAGAATTTCTTCACACTGATGAGGCAAAAGTAATATATCGTGACTTTAGAACTTCTAATGTCCTGCTGGATTCACACTACAACGTCAAACTCTTTGATTTGAGTTTGGCTAAGGACCGGCCAGCAGGTGATAGAAGCCATGACTCAACAAGGACCAGGGAGCCATATTATGCAGCTCCCGAGTATCTGGCCACAGGTCAATTAACCACCAAAACTGATGTGTATAGTTTTGGGGTTTTTATGCTCGAAATGTTGTGCGGAAGACGAGCTGTGGACAAGAACCGACCAATAGGGGAACATAGCTTAGTTGAATGGGCCAGACCTCACCTTGCCAGCAAACGCAGAGTTCTCCAAATCTTGGATGATCATATTGAAGGCCAGTGCTCAGTTGCTGGAGCTCTGAAAGCTGCTAACCTTGCGTTTCTATGCTTATCACTAAATCCCAAGTTTAGGCCAAACATGAGTGATGTGGTAAAAGCATTGGAGCAGCTTCAGGGTTCCATTGACATGAAGGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

291

Amino Acids

32.99

Weight (kDa)

6.86

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 279 3e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 24 - 277 1.1e-34 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0009775.1_g000006
rosa_roxburghii Rroxscaffold_4G00289370
rosa_wichuraiana Rw1G030490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 712
AciI CCGC 2 cut(s) 140, 612
AclWI GGATC 2 cut(s) 141, 324
AcoI YGGCCR 2 cut(s) 473, 543
AcsI RAATTY 4 cut(s) 58, 156, 245, 359
AcuI CTGAAG 1 cut(s) 830
AfiI CCNNNNNNNGG 5 cut(s) 86, 136, 235, 712, 804
AgsI TTSAA 5 cut(s) 40, 302, 328, 665, 728
AjnI CCWGG 3 cut(s) 129, 256, 509
AluBI AGCT 9 cut(s) 71, 175, 264, 530, 623, 657, 752, 761, 844
AluI AGCT 9 cut(s) 71, 175, 264, 530, 623, 657, 752, 761, 844
Alw21I GWGCWC 2 cut(s) 740, 754
AlwI GGATC 2 cut(s) 141, 324
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 6 cut(s) 20, 473, 543, 669, 730, 806
ApeKI GCWGC 5 cut(s) 232, 344, 527, 761, 841
ApoI RAATTY 4 cut(s) 58, 156, 245, 359
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 4 cut(s) 20, 469, 507, 669
AsuHPI GGTGA 5 cut(s) 20, 107, 218, 494, 671
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 469, 507
BalI TGGCCA 1 cut(s) 545
BanII GRGCYC 1 cut(s) 754
BbsI GAAGAC 2 cut(s) 28, 622
Bbv12I GWGCWC 2 cut(s) 740, 754
BbvI GCAGC 5 cut(s) 219, 331, 539, 748, 853
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 3 cut(s) 131, 258, 511
BclI TGATCA 2 cut(s) 223, 718
BfuAI ACCTGC 1 cut(s) 470
BisI GCNGC 5 cut(s) 233, 345, 528, 762, 842
BlsI GCNGC 5 cut(s) 234, 346, 529, 763, 843
Bme1390I CCNGG 3 cut(s) 131, 258, 511
Bme18I GGWCC 2 cut(s) 469, 507
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 4 cut(s) 20, 469, 507, 669
BmiI GGNNCC 2 cut(s) 516, 853
BmrFI CCNGG 3 cut(s) 131, 258, 511
BpiI GAAGAC 2 cut(s) 28, 622
BpmI CTGGAG 1 cut(s) 768
Bpu10I CCTNAGC 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 337, 348, 510
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 136, 235, 712, 804
Bse118I RCCGGY 2 cut(s) 228, 471
Bse1I ACTGG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 3 cut(s) 131, 258, 511
BseDI CCNNGG 3 cut(s) 337, 348, 510
BseGI GGATG 2 cut(s) 226, 721
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 5 cut(s) 86, 136, 235, 712, 804
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 1 cut(s) 733
BseXI GCAGC 5 cut(s) 219, 331, 539, 748, 853
BshFI GGCC 6 cut(s) 22, 475, 545, 671, 732, 808
BsiHKAI GWGCWC 2 cut(s) 740, 754
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 2 cut(s) 229, 472
BslI CCNNNNNNNGG 5 cut(s) 86, 136, 235, 712, 804
BsnI GGCC 6 cut(s) 22, 475, 545, 671, 732, 808
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 740, 754
Bsp143I GATC 4 cut(s) 133, 223, 316, 718
BspACI CCGC 2 cut(s) 140, 612
BspANI GGCC 6 cut(s) 22, 475, 545, 671, 732, 808
BspCNI CTCAG 1 cut(s) 752
BspLI GGNNCC 2 cut(s) 516, 853
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 141, 324
BsrFI RCCGGY 2 cut(s) 228, 471
BsrI ACTGG 1 cut(s) 733
BssAI RCCGGY 2 cut(s) 228, 471
BssECI CCNNGG 3 cut(s) 337, 348, 510
BssMI GATC 4 cut(s) 133, 223, 316, 718
BssT1I CCWWGG 2 cut(s) 337, 348
Bst2UI CCWGG 3 cut(s) 131, 258, 511
BstC8I GCNNGC 2 cut(s) 477, 688
BstDEI CTNAG 5 cut(s) 31, 214, 465, 658, 739
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 226, 721
BstKTI GATC 4 cut(s) 136, 226, 319, 721
BstMBI GATC 4 cut(s) 133, 223, 316, 718
BstMWI GCNNNNNNNGC 3 cut(s) 341, 758, 770
BstNI CCWGG 3 cut(s) 131, 258, 511
BstSCI CCNGG 3 cut(s) 129, 256, 509
BstV1I GCAGC 5 cut(s) 219, 331, 539, 748, 853
BstV2I GAAGAC 2 cut(s) 28, 622
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 6 cut(s) 22, 475, 545, 671, 732, 808
BtsCI GGATG 2 cut(s) 226, 721
BtsIMutI CAGTG 2 cut(s) 369, 740
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 477, 688
CaiI CAGNNNCTG 1 cut(s) 746
Cfr10I RCCGGY 2 cut(s) 228, 471
Cfr13I GGNCC 4 cut(s) 20, 469, 507, 669
CviAII CATG 5 cut(s) 91, 312, 494, 814, 862
DdeI CTNAG 5 cut(s) 31, 214, 465, 658, 739
DpnI GATC 4 cut(s) 135, 225, 318, 720
DpnII GATC 4 cut(s) 133, 223, 316, 718
EaeI YGGCCR 2 cut(s) 473, 543
EciI GGCGGA 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 337, 348
Eco24I GRGCYC 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 469, 507
Eco53kI GAGCTC 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 830
Eco88I CYCGRG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 752
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 3 cut(s) 129, 256, 509
EcoT14I CCWWGG 2 cut(s) 337, 348
EcoT38I GRGCYC 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 337, 348
FaeI CATG 5 cut(s) 94, 315, 497, 817, 865
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FatI CATG 5 cut(s) 90, 311, 493, 813, 861
FbaI TGATCA 2 cut(s) 223, 718
Fnu4HI GCNGC 5 cut(s) 233, 345, 528, 762, 842
FokI GGATG 2 cut(s) 233, 728
FriOI GRGCYC 1 cut(s) 754
Fsp4HI GCNGC 5 cut(s) 233, 345, 528, 762, 842
GluI GCNGC 5 cut(s) 233, 345, 528, 762, 842
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 6 cut(s) 22, 475, 545, 671, 732, 808
HapII CCGG 2 cut(s) 229, 472
Hin1II CATG 5 cut(s) 94, 315, 497, 817, 865
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 2 cut(s) 425, 497
HpaII CCGG 2 cut(s) 229, 472
HphI GGTGA 5 cut(s) 20, 107, 218, 494, 671
Hpy166II GTNNAC 2 cut(s) 150, 628
Hpy188I TCNGA 2 cut(s) 284, 756
Hpy188III TCNNGA 2 cut(s) 395, 533
Hpy8I GTNNAC 2 cut(s) 150, 628
HpyAV CCTTC 3 cut(s) 279, 722, 859
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 758, 770
HpyF3I CTNAG 5 cut(s) 31, 214, 465, 658, 739
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 5 cut(s) 94, 315, 497, 817, 865
Ksp22I TGATCA 2 cut(s) 223, 718
Kzo9I GATC 4 cut(s) 133, 223, 316, 718
LmnI GCTCC 4 cut(s) 514, 535, 749, 838
Lsp1109I GCAGC 5 cut(s) 219, 331, 539, 748, 853
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 135, 225, 318, 720
MboI GATC 4 cut(s) 133, 223, 316, 718
MboII GAAGA 5 cut(s) 28, 134, 311, 356, 627
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 740, 754
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 7 cut(s) 58, 156, 245, 271, 330, 359, 554
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 4 cut(s) 211, 264, 370, 687
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 545
MseI TTAA 2 cut(s) 65, 557
MslI CAYNNNNRTG 5 cut(s) 51, 89, 310, 372, 860
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 229, 472
MspR9I CCNGG 3 cut(s) 131, 258, 511
MvaI CCWGG 3 cut(s) 131, 258, 511
MwoI GCNNNNNNNGC 3 cut(s) 341, 758, 770
NdeII GATC 4 cut(s) 133, 223, 316, 718
NlaIII CATG 5 cut(s) 94, 315, 497, 817, 865
NlaIV GGNNCC 2 cut(s) 516, 853
NmuCI GTSAC 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 712
PfoI TCCNGGA 2 cut(s) 129, 256
PkrI GCNGC 5 cut(s) 234, 346, 529, 763, 843
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 754
Psp6I CCWGG 3 cut(s) 129, 256, 509
PspGI CCWGG 3 cut(s) 129, 256, 509
PspN4I GGNNCC 2 cut(s) 516, 853
PspPI GGNCC 4 cut(s) 20, 469, 507, 669
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 5 cut(s) 51, 89, 310, 372, 860
SacI GAGCTC 1 cut(s) 754
SaqAI TTAA 2 cut(s) 65, 557
SatI GCNGC 5 cut(s) 233, 345, 528, 762, 842
Sau3AI GATC 4 cut(s) 133, 223, 316, 718
Sau96I GGNCC 4 cut(s) 20, 469, 507, 669
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 131, 258, 511
SduI GDGCHC 2 cut(s) 740, 754
SinI GGWCC 2 cut(s) 469, 507
SmiMI CAYNNNNRTG 5 cut(s) 51, 89, 310, 372, 860
Sse9I AATT 7 cut(s) 58, 156, 245, 271, 330, 359, 554
SsiI CCGC 2 cut(s) 140, 612
SstI GAGCTC 1 cut(s) 754
StyD4I CCNGG 3 cut(s) 129, 256, 509
StyI CCWWGG 2 cut(s) 337, 348
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 600
TasI AATT 7 cut(s) 58, 156, 245, 271, 330, 359, 554
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 65, 557
Tru9I TTAA 2 cut(s) 65, 557
TscAI CASTG 2 cut(s) 376, 740
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 5 cut(s) 232, 344, 527, 761, 841
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 51, 149, 258, 300
TspRI CASTG 2 cut(s) 376, 740
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 469, 507
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 4 cut(s) 58, 156, 245, 359
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.