Rmu_sc0010495.1_g000002

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010495.1
OG0021638
Physical Location & Seq
Reverse (-)
12336 .. 15191
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010495.1_g000002.1.cds

Sequence Viewer

Length: 1116 bp
atgggcttcgtcggagttccgattcttgattacccatcacaacgccccaaaaacaacaagttttcgctcccaaactctagaatttatctcagctcaataatcctattagtcgcccaaactgaaatttatgctcaatttgtagatatcagctacaagaaaggtgtcaagtttatgaattttgatgagaaaaatcgcaggcccgcaagaagtgaatatggtcatttttgcaaatcactcagcagaaatcttgtgcttgtttggctaacaatgggagagaaaggaacagtttgtgtaattggtggtggaggctttgtggcatctttggtcatcaagctgcttctctttcagggatacagagttcatggctctgctagagacccaggtcatgagaagaacgccaatttgaagaaaggtaagaccaagtttggcaactattgtcttgccaagccaatagcagaaattgaagctttggagtatgcaaagagaagtgaattgagaatatttaatacatcacttggctccaaatgcaaattgctcggtgattgtaacagctttgatgcttcaattatatatgtcactttagaaggagacatgcctctgttctccatctctctcacccaatcagtcactcctgcagacgtttgggatatggatgcggtggggaagcttgatcggatcacgtacatgggttcgtggactttggcgacgacgttgagagcggcggtgaacaacagtgggtgggactgcgtatgcggccactgtgatcgatgccgaaggtcggggccatggggttttggtcaagggagaggcgctgactccatttatggtgatggtttgactcaatttagactggaggttggagaacggagaagcacaaactcggcatctccagcgatggcacgtacggcgtcaccctatgtcgggttgtcagcgaagcttcaagacctcgacaatcagctcaggctaaaggcgctggtgacggcggtgctgcgtcgattggtggtggcggtggcggtgacgttttgtggtggccggaaatggtgttttccggccaaggcaggaagaagagcgaaagggagagagaaaaagaaagagataagagacgcggccgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

371

Amino Acids

40.88

Weight (kDa)

9.69

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021638)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000857.1_g000027 Rmu_sc0006599.1_g000005 Rmu_sc0010495.1_g000002
rosa_roxburghii Rroxscaffold_3G00257870
rosa_samantha Rh5AG186400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 719
AccII CGCG 1 cut(s) 1106
AciI CCGC 9 cut(s) 201, 656, 719, 722, 753, 983, 1007, 1013, 1106
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 4 cut(s) 754, 1030, 1050, 1107
AcsI RAATTY 3 cut(s) 81, 123, 175
AcyI GRCGYC 1 cut(s) 908
AfaI GTAC 2 cut(s) 683, 904
AfiI CCNNNNNNNGG 3 cut(s) 778, 920, 921
AgsI TTSAA 4 cut(s) 406, 464, 564, 941
AjnI CCWGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 8 cut(s) 93, 150, 334, 467, 552, 667, 937, 958
AluI AGCT 8 cut(s) 93, 150, 334, 467, 552, 667, 937, 958
Alw26I GTCTC 3 cut(s) 369, 582, 1095
AlwI GGATC 1 cut(s) 683
AoxI GGCC 6 cut(s) 197, 754, 782, 1030, 1050, 1107
ApeKI GCWGC 2 cut(s) 334, 988
ApoI RAATTY 3 cut(s) 81, 123, 175
AspLEI GCGC 2 cut(s) 812, 973
AspS9I GGNCC 2 cut(s) 198, 782
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 7 cut(s) 551, 607, 736, 839, 903, 988, 1027
BbvI GCAGC 2 cut(s) 321, 975
BccI CCATC 4 cut(s) 43, 614, 824, 889
BceAI ACGGC 2 cut(s) 921, 996
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciT130I CCWGG 1 cut(s) 381
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 369, 582, 1095
BfaI CTAG 2 cut(s) 78, 372
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 2 cut(s) 813, 974
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 5 cut(s) 335, 720, 754, 989, 1107
BlsI GCNGC 5 cut(s) 336, 721, 755, 990, 1108
Bme1390I CCNGG 2 cut(s) 381, 1111
BmgT120I GGNCC 2 cut(s) 198, 782
BmiI GGNNCC 2 cut(s) 520, 783
BmrFI CCNGG 2 cut(s) 381, 1111
BmsI GCATC 5 cut(s) 326, 547, 643, 758, 893
BoxI GACNNNNGTC 1 cut(s) 381
BpmI CTGGAG 2 cut(s) 872, 873
Bpu10I CCTNAGC 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 1111
Bsa29I ATCGAT 1 cut(s) 766
BsaAI YACGTR 2 cut(s) 681, 902
BsaHI GRCGYC 1 cut(s) 908
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 379, 785, 1053
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 778, 920, 921
Bse1I ACTGG 1 cut(s) 855
BseBI CCWGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 766
BseDI CCNNGG 3 cut(s) 379, 785, 1053
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 3 cut(s) 778, 920, 921
BseMII CTCAG 3 cut(s) 103, 250, 973
BseNI ACTGG 1 cut(s) 855
BseX3I CGGCCG 1 cut(s) 1107
BseXI GCAGC 2 cut(s) 321, 975
Bsh1236I CGCG 1 cut(s) 1106
Bsh1285I CGRYCG 1 cut(s) 1110
BshFI GGCC 6 cut(s) 199, 756, 784, 1032, 1052, 1109
BshVI ATCGAT 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 1110
BsiSI CCGG 3 cut(s) 1033, 1049, 1110
BsiWI CGTACG 1 cut(s) 902
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 3 cut(s) 778, 920, 921
BsmAI GTCTC 3 cut(s) 369, 582, 1095
BsmBI CGTCTC 1 cut(s) 1095
BsmFI GGGAC 1 cut(s) 755
BsnI GGCC 6 cut(s) 199, 756, 784, 1032, 1052, 1109
Bso31I GGTCTC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 670, 675, 763
Bsp19I CCATGG 1 cut(s) 785
BspACI CCGC 9 cut(s) 201, 656, 719, 722, 753, 983, 1007, 1013, 1106
BspANI GGCC 6 cut(s) 199, 756, 784, 1032, 1052, 1109
BspCNI CTCAG 3 cut(s) 102, 249, 972
BspDI ATCGAT 1 cut(s) 766
BspFNI CGCG 1 cut(s) 1106
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 520, 783
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 719
BsrI ACTGG 1 cut(s) 855
BssECI CCNNGG 3 cut(s) 379, 785, 1053
BssMI GATC 3 cut(s) 670, 675, 763
BssNI GRCGYC 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 785, 1053
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 286, 734, 761
Bst6I CTCTTC 1 cut(s) 1060
BstACI GRCGYC 1 cut(s) 908
BstBAI YACGTR 2 cut(s) 681, 902
BstC8I GCNNGC 2 cut(s) 197, 201
BstDEI CTNAG 3 cut(s) 89, 236, 959
BstDSI CCRYGG 1 cut(s) 785
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 1 cut(s) 1106
BstH2I RGCGCY 2 cut(s) 813, 974
BstHHI GCGC 2 cut(s) 812, 973
BstKTI GATC 3 cut(s) 673, 678, 766
BstMAI GTCTC 3 cut(s) 369, 582, 1095
BstMBI GATC 3 cut(s) 670, 675, 763
BstMCI CGRYCG 1 cut(s) 1110
BstMWI GCNNNNNNNGC 6 cut(s) 259, 525, 753, 890, 905, 970
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 595
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 379, 1109
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 1 cut(s) 1106
BstV1I GCAGC 2 cut(s) 321, 975
BstZI CGGCCG 1 cut(s) 1107
Bsu15I ATCGAT 1 cut(s) 766
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 6 cut(s) 199, 756, 784, 1032, 1052, 1109
BsuTUI ATCGAT 1 cut(s) 766
BtgI CCRYGG 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 908
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 739, 757
Cac8I GCNNGC 2 cut(s) 197, 201
CciI TCATGA 1 cut(s) 385
CfoI GCGC 2 cut(s) 812, 973
Cfr13I GGNCC 2 cut(s) 198, 782
ClaI ATCGAT 1 cut(s) 766
CseI GACGC 2 cut(s) 897, 980
Csp6I GTAC 2 cut(s) 682, 903
CviAII CATG 5 cut(s) 362, 386, 592, 685, 786
CviQI GTAC 2 cut(s) 682, 903
DdeI CTNAG 3 cut(s) 89, 236, 959
DpnI GATC 3 cut(s) 672, 677, 765
DpnII GATC 3 cut(s) 670, 675, 763
EaeI YGGCCR 4 cut(s) 754, 1030, 1050, 1107
EagI CGGCCG 1 cut(s) 1107
Eam1104I CTCTTC 1 cut(s) 1060
EarI CTCTTC 1 cut(s) 1060
EclXI CGGCCG 1 cut(s) 1107
Eco130I CCWWGG 2 cut(s) 785, 1053
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 1107
EcoRII CCWGG 1 cut(s) 379
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 785, 1053
ErhI CCWWGG 2 cut(s) 785, 1053
Esp3I CGTCTC 1 cut(s) 1095
FaeI CATG 5 cut(s) 365, 389, 595, 688, 789
FaqI GGGAC 1 cut(s) 755
FatI CATG 5 cut(s) 361, 385, 591, 684, 785
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 5 cut(s) 335, 720, 754, 989, 1107
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 5 cut(s) 335, 720, 754, 989, 1107
FspBI CTAG 2 cut(s) 78, 372
GlaI GCGC 2 cut(s) 811, 972
GluI GCNGC 5 cut(s) 335, 720, 754, 989, 1107
GsuI CTGGAG 2 cut(s) 872, 873
HaeII RGCGCY 2 cut(s) 813, 974
HaeIII GGCC 6 cut(s) 199, 756, 784, 1032, 1052, 1109
HapII CCGG 3 cut(s) 1033, 1049, 1110
HgaI GACGC 2 cut(s) 897, 980
HhaI GCGC 2 cut(s) 812, 973
Hin1I GRCGYC 1 cut(s) 908
Hin1II CATG 5 cut(s) 365, 389, 595, 688, 789
Hin6I GCGC 2 cut(s) 810, 971
HinP1I GCGC 2 cut(s) 810, 971
HindIII AAGCTT 3 cut(s) 465, 665, 935
HinfI GANTC 3 cut(s) 22, 815, 838
HpaII CCGG 3 cut(s) 1033, 1049, 1110
HphI GGTGA 7 cut(s) 551, 607, 736, 839, 903, 988, 1027
Hpy166II GTNNAC 2 cut(s) 696, 727
Hpy188I TCNGA 3 cut(s) 14, 21, 675
Hpy188III TCNNGA 4 cut(s) 26, 78, 386, 941
Hpy8I GTNNAC 2 cut(s) 696, 727
Hpy99I CGWCG 4 cut(s) 14, 709, 712, 996
HpyAV CCTTC 2 cut(s) 578, 768
HpyCH4III ACNGT 3 cut(s) 286, 734, 761
HpyCH4IV ACGT 5 cut(s) 639, 680, 710, 901, 1019
HpyCH4V TGCA 4 cut(s) 228, 479, 528, 635
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 525, 753, 890, 905, 970
HpyF3I CTNAG 3 cut(s) 89, 236, 959
HpySE526I ACGT 5 cut(s) 639, 680, 710, 901, 1019
Hsp92I GRCGYC 1 cut(s) 908
Hsp92II CATG 5 cut(s) 365, 389, 595, 688, 789
HspAI GCGC 2 cut(s) 810, 971
Kzo9I GATC 3 cut(s) 670, 675, 763
LguI GCTCTTC 1 cut(s) 1060
LmnI GCTCC 2 cut(s) 72, 524
Lsp1109I GCAGC 2 cut(s) 321, 975
LweI GCATC 5 cut(s) 326, 547, 643, 758, 893
MaeI CTAG 2 cut(s) 78, 372
MaeII ACGT 5 cut(s) 639, 680, 710, 901, 1019
MaeIII GTNAC 6 cut(s) 545, 574, 625, 909, 976, 1015
MalI GATC 3 cut(s) 672, 677, 765
MbiI CCGCTC 1 cut(s) 719
MboI GATC 3 cut(s) 670, 675, 763
MboII GAAGA 4 cut(s) 403, 418, 1074, 1077
MlyI GAGTC 2 cut(s) 809, 832
MmeI TCCRAC 1 cut(s) 838
MnlI CCTC 5 cut(s) 299, 606, 800, 847, 956
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 683
MspI CCGG 3 cut(s) 1033, 1049, 1110
MspR9I CCNGG 2 cut(s) 381, 1111
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 1106
MwoI GCNNNNNNNGC 6 cut(s) 259, 525, 753, 890, 905, 970
NciI CCSGG 1 cut(s) 1111
NcoI CCATGG 1 cut(s) 785
NdeII GATC 3 cut(s) 670, 675, 763
NlaIII CATG 5 cut(s) 365, 389, 595, 688, 789
NlaIV GGNNCC 2 cut(s) 520, 783
NmeAIII GCCGAG 1 cut(s) 860
NmuCI GTSAC 5 cut(s) 574, 625, 909, 976, 1015
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 1060
PfeI GAWTC 1 cut(s) 22
Pfl23II CGTACG 1 cut(s) 902
PkrI GCNGC 5 cut(s) 336, 721, 755, 990, 1108
PleI GAGTC 2 cut(s) 809, 832
PpsI GAGTC 2 cut(s) 809, 832
Ppu21I YACGTR 2 cut(s) 681, 902
PshAI GACNNNNGTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspLI CGTACG 1 cut(s) 902
PspN4I GGNNCC 2 cut(s) 520, 783
PspPI GGNCC 2 cut(s) 198, 782
PstI CTGCAG 1 cut(s) 637
RsaI GTAC 2 cut(s) 683, 904
RsaNI GTAC 2 cut(s) 682, 903
RseI CAYNNNNRTG 1 cut(s) 683
SapI GCTCTTC 1 cut(s) 1060
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 5 cut(s) 335, 720, 754, 989, 1107
Sau3AI GATC 3 cut(s) 670, 675, 763
Sau96I GGNCC 2 cut(s) 198, 782
SchI GAGTC 2 cut(s) 809, 832
ScrFI CCNGG 2 cut(s) 381, 1111
SfaNI GCATC 5 cut(s) 326, 547, 643, 758, 893
SfcI CTRYAG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 683
SsiI CCGC 9 cut(s) 201, 656, 719, 722, 753, 983, 1007, 1013, 1106
SspI AATATT 1 cut(s) 501
SspMI CTAG 2 cut(s) 78, 372
StyD4I CCNGG 2 cut(s) 379, 1109
StyI CCWWGG 2 cut(s) 785, 1053
TaaI ACNGT 3 cut(s) 286, 734, 761
TaiI ACGT 5 cut(s) 642, 683, 713, 904, 1022
TaqI TCGA 3 cut(s) 766, 948, 994
TauI GCSGC 3 cut(s) 722, 756, 1109
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 739, 764
TseFI GTSAC 5 cut(s) 574, 625, 909, 976, 1015
TseI GCWGC 2 cut(s) 334, 988
Tsp45I GTSAC 5 cut(s) 574, 625, 909, 976, 1015
TspDTI ATGAA 2 cut(s) 188, 350
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 2 cut(s) 739, 764
XapI RAATTY 3 cut(s) 81, 123, 175
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 1 cut(s) 595
XspI CTAG 2 cut(s) 78, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.