Rmu_sc0010742.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010742.1
OG0025527
Physical Location & Seq
Forward (+)
1 .. 1156
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010742.1_g000001.1.cds

Sequence Viewer

Length: 583 bp
atgtctacgacttgtgcgttgcaacataacaagtgagggattgagtgcagtgtcttcaagacttccactgttggaggaacttgaaatttcacattgcccgctctcacatgaaactctagaagtggttggggcctcttgtcctcttttgaaatcactgaaactcaacagtcgatggtacagtttcacccatgaggagtgtaacaagcatgcacttgccatagcaggaacaatgcataatttatgccacctccagatttttgcgaataagctgactaatgatggcttgcaggctatacttgatggttgtcctccacttgagtcacttgatctgcgccagtgttacaatcttaatctggaggaaaattttgagaaaagattggtggaacgaattaaacttttacggcttccggatgattcaactgatgactatgagtttgatgctacggttctcgagtacggatcagataatccagagcctggagtcgaattttttgacgaaattttcatggtagatgatgcagatggtgaagtcttcccctggaatggtttcgttgagtttgaggatttctattactttttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

193

Amino Acids

22.07

Weight (kDa)

4.42

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025527)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002209.1_g000026 Rmu_sc0010742.1_g000001
rosa_samantha Rh5DG116700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 467
AcsI RAATTY 4 cut(s) 85, 362, 486, 499
AfaI GTAC 2 cut(s) 177, 456
AfiI CCNNNNNNNGG 2 cut(s) 477, 543
AgsI TTSAA 4 cut(s) 58, 84, 149, 418
AjnI CCWGG 2 cut(s) 476, 537
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 407
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 4 cut(s) 85, 362, 486, 499
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 176, 537
AvaI CYCGRG 1 cut(s) 450
BbsI GAAGAC 2 cut(s) 46, 524
BccI CCATC 4 cut(s) 166, 273, 294, 516
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 478, 539
BfaI CTAG 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 478, 539
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 478, 539
BmsI GCATC 2 cut(s) 428, 506
BpiI GAAGAC 2 cut(s) 46, 524
BpmI CTGGAG 3 cut(s) 234, 375, 499
BpuEI CTTGAG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 543
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 2 cut(s) 478, 539
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 477, 543
BseMI GCAATG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 477, 543
BsnI GGCC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 450
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 2 cut(s) 326, 459
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 2 cut(s) 326, 459
Bst2UI CCWGG 2 cut(s) 478, 539
Bst4CI ACNGT 4 cut(s) 70, 168, 180, 446
BstC8I GCNNGC 4 cut(s) 99, 208, 285, 289
BstF5I GGATG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 329, 462
BstMBI GATC 2 cut(s) 326, 459
BstNI CCWGG 2 cut(s) 478, 539
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 476, 537
BstV2I GAAGAC 2 cut(s) 46, 524
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 4 cut(s) 55, 66, 153, 342
Cac8I GCNNGC 4 cut(s) 99, 208, 285, 289
CaiI CAGNNNCTG 1 cut(s) 477
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 176, 455
CviAII CATG 4 cut(s) 108, 189, 207, 506
CviJI RGCY 6 cut(s) 132, 269, 283, 291, 404, 476
CviKI_1 RGCY 6 cut(s) 132, 269, 283, 291, 404, 476
CviQI GTAC 2 cut(s) 176, 455
DpnI GATC 2 cut(s) 328, 461
DpnII GATC 2 cut(s) 326, 459
Eco88I CYCGRG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 476, 537
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 4 cut(s) 111, 192, 210, 509
FatI CATG 4 cut(s) 107, 188, 206, 505
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 423
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 333
GsuI CTGGAG 3 cut(s) 234, 375, 499
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 408
HhaI GCGC 1 cut(s) 334
Hin1II CATG 4 cut(s) 111, 192, 210, 509
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 318, 414, 481
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 176, 537
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 7 cut(s) 58, 117, 251, 354, 408, 450, 471
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 4 cut(s) 70, 168, 180, 446
HpyCH4V TGCA 6 cut(s) 22, 48, 210, 233, 287, 519
Hsp92II CATG 4 cut(s) 111, 192, 210, 509
HspAI GCGC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 407
Kzo9I GATC 2 cut(s) 326, 459
LweI GCATC 2 cut(s) 428, 506
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 3 cut(s) 198, 319, 339
MalI GATC 2 cut(s) 328, 461
MbiI CCGCTC 1 cut(s) 101
MboI GATC 2 cut(s) 326, 459
MboII GAAGA 2 cut(s) 46, 524
MluCI AATT 6 cut(s) 85, 236, 362, 388, 486, 499
MlyI GAGTC 2 cut(s) 327, 490
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 9 cut(s) 29, 68, 143, 151, 185, 258, 319, 350, 554
Mph1103I ATGCAT 1 cut(s) 235
MroI TCCGGA 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 2 cut(s) 349, 391
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 478, 539
MvaI CCWGG 2 cut(s) 478, 539
NdeII GATC 2 cut(s) 326, 459
NlaIII CATG 4 cut(s) 111, 192, 210, 509
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 477
PleI GAGTC 2 cut(s) 326, 489
PpsI GAGTC 2 cut(s) 326, 489
Psp6I CCWGG 2 cut(s) 476, 537
PspGI CCWGG 2 cut(s) 476, 537
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 477
RsaI GTAC 2 cut(s) 177, 456
RsaNI GTAC 2 cut(s) 176, 455
SaqAI TTAA 2 cut(s) 349, 391
Sau3AI GATC 2 cut(s) 326, 459
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 2 cut(s) 327, 490
ScrFI CCNGG 2 cut(s) 478, 539
SetI ASST 2 cut(s) 250, 271
SfaNI GCATC 2 cut(s) 428, 506
Sfr274I CTCGAG 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 315, 450
SmoI CTYRAG 2 cut(s) 315, 450
SphI GCATGC 1 cut(s) 210
Sse9I AATT 6 cut(s) 85, 236, 362, 388, 486, 499
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 476, 537
TaaI ACNGT 4 cut(s) 70, 168, 180, 446
TaqI TCGA 3 cut(s) 170, 451, 484
TasI AATT 6 cut(s) 85, 236, 362, 388, 486, 499
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 2 cut(s) 349, 391
Tru9I TTAA 2 cut(s) 349, 391
TscAI CASTG 4 cut(s) 55, 73, 160, 342
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 124, 494
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 4 cut(s) 55, 73, 160, 342
Van91I CCANNNNNTGG 1 cut(s) 477
XapI RAATTY 4 cut(s) 85, 362, 486, 499
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.