Rh5DG116700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0025527
Physical Location & Seq
Forward (+)
10561241 .. 10561594
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG116700.1

Sequence Viewer

Length: 354 bp
ATGCATAATTTACGCCACCTCCAGATTTTTATGAATAAGCTGACTAATGATGGCTTGCGGGCTATACTTGATGGTTGTCCTCCACTTGAGTCACTTGATCTGCGCCAGTGTTACAATCTTAATCTGGAGGAAGATTTTGAGAAAAGATTGGTGGAACGAATTAAACTATTACGGCTTCCTGATGATTCAACTGATGACTATGAGTTTGATGCTACGGTTCTCGAGTACGGATCAGATAATCCAGAGCCTGAAGTCGAATTTTTTGACGAAATGTTCATGGTAGATGATGCAGATGGTGAAGTCTTCCCCTGGAATGGTTTCGTTGAGTTTGAGGATTTCAATTACTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

117

Amino Acids

13.9

Weight (kDa)

4.05

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025527)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002209.1_g000026 Rmu_sc0010742.1_g000001
rosa_samantha Rh5DG116700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 189, 340
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 221
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 295
BccI CCATC 3 cut(s) 44, 65, 287
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 199, 277
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 2 cut(s) 5, 146
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 308
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 97, 230
BspACI CCGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 97, 230
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 56, 60
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 100, 233
BstMBI GATC 2 cut(s) 97, 230
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 56, 60
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 40, 54, 62, 175, 247
CviKI_1 RGCY 5 cut(s) 40, 54, 62, 175, 247
CviQI GTAC 1 cut(s) 226
DpnI GATC 2 cut(s) 99, 232
DpnII GATC 2 cut(s) 97, 230
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 280
FaiI YATR 6 cut(s) 6, 32, 65, 201, 278, 352
FatI CATG 1 cut(s) 276
FauI CCCGC 1 cut(s) 51
GlaI GCGC 1 cut(s) 104
GsuI CTGGAG 2 cut(s) 5, 146
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 89, 185
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 5 cut(s) 22, 125, 179, 221, 242
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 4, 290
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 97, 230
LpnPI CCDG 8 cut(s) 35, 110, 119, 192, 255, 261, 295, 322
LweI GCATC 2 cut(s) 199, 277
MaeIII GTNAC 2 cut(s) 90, 110
MalI GATC 2 cut(s) 99, 232
MboI GATC 2 cut(s) 97, 230
MboII GAAGA 2 cut(s) 143, 295
MluCI AATT 4 cut(s) 7, 159, 257, 340
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 29, 90, 121, 325
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 2 cut(s) 120, 162
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
NdeII GATC 2 cut(s) 97, 230
NlaIII CATG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 185
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 120, 162
Sau3AI GATC 2 cut(s) 97, 230
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 310
SetI ASST 2 cut(s) 21, 42
SfaNI GCATC 2 cut(s) 199, 277
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 86, 221
SmoI CTYRAG 2 cut(s) 86, 221
Sse9I AATT 4 cut(s) 7, 159, 257, 340
SsiI CCGC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 222, 255
TasI AATT 4 cut(s) 7, 159, 257, 340
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 120, 162
Tru9I TTAA 2 cut(s) 120, 162
TscAI CASTG 1 cut(s) 113
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 47, 265
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 113
XapI RAATTY 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.