Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010851.1

Orthogroup ID

OG0012452

Physical Location & Seq

Genomic Coordinates Reverse (-)

11310 .. 13614

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010851.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggctactgtggaagctggtcggcagcttttatatggggggtttggtcgcctcggctgttttgatccatgtctaagcaatgtaaatggggtcatttctgtcaagtctggtgtaaataatacatggaagaggagtttagtgcgtggtcaggtacataaaacttcaagagttccacaggatcgccggggggttgggccctttcaggatacaagtggtgtttttcatggaaaaggttgtgctaggagattggattctatgagatacaattgccagcgggtagaaagtctgagcggaggagctgcagaagatcagcgcaggatgttgtttgtggaggaatcagataaagtgatatcagttccttctaatggtagacccaattcagatgttaatgaattcaaagtggatcaaacactggaccagggaaatgggggttttgggtcgaatggtaagccggctgcagctgcaataaataaaaattcttcacagaaggttatgagcaatttaattgaggatgaagcttggactttactaagaaactccatggtctattactgtagtaatcctattggaaccattgctgctaatgatccaagcgcccctagtactctgaactatgatcaggtctttattcgtgacttcataccttctgggatagctttccttttaaagggagagtatgatatcgtgcggaacttcattcttcatacccttcagttgcagagctgggagaaaaccatggattgttatagtcctggtcaaggactgatgcctgccagttttaaggttcgcactgttccgctcgaaggtgaagactatgcaactgaagatgtgttagatcctgactttggtgaagctgctattggtcgtgttgccccagttgactctgggttatggtggattatcttgttacgagcttatggaaaatgctctggagatctttcagtgcaagagagagttgatgtgcaaacagggataaaaatgattttaaagctgtgtcttgcggatggttttgatatgtttccaacactgctggtcacagatggttcttgcatgatagatcgtcggatgggaattcatggtcatcctttggagattcaggcaagttatttctttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0022414 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090599 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

372

Amino Acids

40.93

Weight (kDa)

6.01

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22510 AT5G22510
fragaria_vesca	FvH4_3g24390
malus_domestica	MD00G1120100.v1.1 MD02G1255300.v1.1 MD11G1159600.v1.1
prunus_persica	Prupe.2G083900_v2.0.a1 Prupe.6G122600_v2.0.a1 Prupe.6G122600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0043881
rosa_laevigata	RLG00000034221
rosa_multiflora	Rmu_sc0009227.1_g000015 Rmu_sc0010851.1_g000004 Rmu_sc0035638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037180
rosa_rugosa	Rorug05G0208900
rosa_samantha	Rh5AG293000 Rh5CG328700
rosa_wichuraiana	Rw5G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	291, 799
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	5 cut(s)	274, 291, 688, 797, 1001
AclWI	GGATC	5 cut(s)	59, 186, 411, 581, 830
AcsI	RAATTY	3 cut(s)	392, 475, 1071
AcuI	CTGAAG	2 cut(s)	695, 843
AfaI	GTAC	2 cut(s)	153, 604
AfiI	CCNNNNNNNGG	5 cut(s)	365, 667, 758, 803, 845
AgsI	TTSAA	2 cut(s)	165, 397
AjnI	CCWGG	2 cut(s)	417, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AlwI	GGATC	5 cut(s)	59, 186, 411, 581, 830
AoxI	GGCC	1 cut(s)	194
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	7 cut(s)	25, 299, 455, 458, 461, 578, 854
ApoI	RAATTY	3 cut(s)	392, 475, 1071
AspLEI	GCGC	2 cut(s)	315, 596
AspS9I	GGNCC	3 cut(s)	194, 195, 415
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	818, 860
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	7 cut(s)	37, 286, 442, 448, 470, 565, 841
BccI	CCATC	3 cut(s)	998, 1034, 1060
BciT130I	CCWGG	2 cut(s)	419, 753
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	2 cut(s)	240, 600
BfmI	CTRYAG	3 cut(s)	300, 456, 553
BfoI	RGCGCY	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	7 cut(s)	26, 300, 456, 459, 462, 579, 855
BlsI	GCNGC	7 cut(s)	27, 301, 457, 460, 463, 580, 856
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	3 cut(s)	185, 419, 753
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	3 cut(s)	194, 195, 415
BmiI	GGNNCC	2 cut(s)	196, 571
BmrFI	CCNGG	3 cut(s)	185, 419, 753
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	869
BpiI	GAAGAC	1 cut(s)	816
BpmI	CTGGAG	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	52, 184, 418, 540, 735
Bsc4I	CCNNNNNNNGG	5 cut(s)	365, 667, 758, 803, 845
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	417, 774, 875
Bse3DI	GCAATG	2 cut(s)	85, 573
BseBI	CCWGG	2 cut(s)	419, 753
BseDI	CCNNGG	5 cut(s)	52, 184, 418, 540, 735
BseGI	GGATG	5 cut(s)	324, 517, 1009, 1071, 1081
BseLI	CCNNNNNNNGG	5 cut(s)	365, 667, 758, 803, 845
BseMI	GCAATG	2 cut(s)	85, 573
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	417, 774, 875
BseRI	GAGGAG	2 cut(s)	145, 309
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	7 cut(s)	37, 286, 442, 448, 470, 565, 841
BseYI	CCCAGC	1 cut(s)	723
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	184, 452
BslI	CCNNNNNNNGG	5 cut(s)	365, 667, 758, 803, 845
BsnI	GGCC	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
Bsp19I	CCATGG	2 cut(s)	540, 735
BspACI	CCGC	5 cut(s)	274, 291, 688, 797, 1001
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	196, 571
BspMAI	CTGCAG	2 cut(s)	304, 460
BspPI	GGATC	5 cut(s)	59, 186, 411, 581, 830
BsrBI	CCGCTC	2 cut(s)	291, 799
BsrDI	GCAATG	2 cut(s)	85, 573
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	417, 774, 875
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	5 cut(s)	52, 184, 418, 540, 735
BssMI	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
BssT1I	CCWWGG	2 cut(s)	540, 735
Bst2UI	CCWGG	2 cut(s)	419, 753
Bst4CI	ACNGT	3 cut(s)	10, 554, 793
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	272, 453, 771
BstDEI	CTNAG	3 cut(s)	74, 287, 530
BstDSI	CCRYGG	2 cut(s)	540, 735
BstENI	CCTNNNNNAGG	2 cut(s)	665, 756
BstF5I	GGATG	5 cut(s)	324, 517, 1009, 1071, 1081
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	2 cut(s)	315, 596
BstKTI	GATC	9 cut(s)	67, 181, 310, 406, 589, 619, 838, 937, 1060
BstMBI	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	419, 753
BstSCI	CCNGG	3 cut(s)	183, 417, 751
BstSFI	CTRYAG	3 cut(s)	300, 456, 553
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	7 cut(s)	37, 286, 442, 448, 470, 565, 841
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	2 cut(s)	835, 934
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	835, 934
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	2 cut(s)	540, 735
BtsCI	GGATG	5 cut(s)	324, 517, 1009, 1071, 1081
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	4 cut(s)	410, 789, 948, 1025
Cac8I	GCNNGC	3 cut(s)	272, 453, 771
CfoI	GCGC	2 cut(s)	315, 596
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	194, 195, 415
Csp6I	GTAC	2 cut(s)	152, 603
CviAII	CATG	7 cut(s)	69, 123, 224, 541, 736, 1051, 1076
CviQI	GTAC	2 cut(s)	152, 603
DdeI	CTNAG	3 cut(s)	74, 287, 530
DpnI	GATC	9 cut(s)	66, 180, 309, 405, 588, 618, 837, 936, 1059
DpnII	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
DraI	TTTAAA	3 cut(s)	666, 987, 1114
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	540, 735
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	2 cut(s)	351, 682
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	695, 843
EcoNI	CCTNNNNNAGG	2 cut(s)	665, 756
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRI	GAATTC	2 cut(s)	392, 1071
EcoRII	CCWGG	2 cut(s)	417, 751
EcoRV	GATATC	2 cut(s)	351, 682
EcoT14I	CCWWGG	2 cut(s)	540, 735
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	540, 735
FaeI	CATG	7 cut(s)	72, 126, 227, 544, 739, 1054, 1079
FatI	CATG	7 cut(s)	68, 122, 223, 540, 735, 1050, 1075
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	7 cut(s)	26, 300, 456, 459, 462, 579, 855
FokI	GGATG	5 cut(s)	331, 524, 1016, 1068, 1078
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	7 cut(s)	26, 300, 456, 459, 462, 579, 855
FspBI	CTAG	2 cut(s)	240, 600
GlaI	GCGC	2 cut(s)	314, 595
GluI	GCNGC	7 cut(s)	26, 300, 456, 459, 462, 579, 855
GsaI	CCCAGC	1 cut(s)	727
GsuI	CTGGAG	1 cut(s)	951
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	2 cut(s)	184, 452
HhaI	GCGC	2 cut(s)	315, 596
Hin1II	CATG	7 cut(s)	72, 126, 227, 544, 739, 1054, 1079
Hin6I	GCGC	2 cut(s)	313, 594
HinP1I	GCGC	2 cut(s)	313, 594
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	251, 335, 881, 1093
HpaII	CCGG	2 cut(s)	184, 452
HphI	GGTGA	2 cut(s)	818, 860
Hpy166II	GTNNAC	2 cut(s)	371, 880
Hpy188I	TCNGA	5 cut(s)	288, 340, 382, 609, 1065
Hpy188III	TCNNGA	5 cut(s)	165, 203, 632, 839, 930
Hpy8I	GTNNAC	2 cut(s)	371, 880
Hpy99I	CGWCG	1 cut(s)	1065
HpyAV	CCTTC	5 cut(s)	369, 481, 654, 719, 797
HpyCH4III	ACNGT	3 cut(s)	10, 554, 793
HpyCH4V	TGCA	8 cut(s)	302, 458, 464, 718, 818, 946, 964, 1050
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	74, 287, 530
Hsp92II	CATG	7 cut(s)	72, 126, 227, 544, 739, 1054, 1079
HspAI	GCGC	2 cut(s)	313, 594
KroI	GCCGGC	1 cut(s)	451
KroNI	GCCGGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	7 cut(s)	37, 286, 442, 448, 470, 565, 841
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	2 cut(s)	240, 600
MaeIII	GTNAC	3 cut(s)	632, 906, 1033
MalI	GATC	9 cut(s)	66, 180, 309, 405, 588, 618, 837, 936, 1059
MbiI	CCGCTC	2 cut(s)	291, 799
MboI	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
MboII	GAAGA	6 cut(s)	139, 317, 471, 692, 821, 836
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	2 cut(s)	835, 934
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	7 cut(s)	265, 376, 392, 475, 499, 504, 1071
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	2 cut(s)	1043, 1046
MnlI	CCTC	5 cut(s)	62, 123, 287, 325, 502
MroNI	GCCGGC	1 cut(s)	451
MseI	TTAA	6 cut(s)	387, 503, 665, 780, 986, 1113
MspA1I	CMGCKG	2 cut(s)	274, 461
MspI	CCGG	2 cut(s)	184, 452
MspR9I	CCNGG	3 cut(s)	185, 419, 753
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	419, 753
MwoI	GCNNNNNNNGC	1 cut(s)	461
NaeI	GCCGGC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	2 cut(s)	540, 735
NdeII	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
NgoMIV	GCCGGC	1 cut(s)	451
NlaIII	CATG	7 cut(s)	72, 126, 227, 544, 739, 1054, 1079
NlaIV	GGNNCC	2 cut(s)	196, 571
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	632, 1033
PdiI	GCCGGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	251, 335, 1093
PkrI	GCNGC	7 cut(s)	27, 301, 457, 460, 463, 580, 856
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	417, 751
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	2 cut(s)	417, 751
PspN4I	GGNNCC	2 cut(s)	196, 571
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	3 cut(s)	194, 195, 415
PstI	CTGCAG	2 cut(s)	304, 460
PsuI	RGATCY	2 cut(s)	835, 934
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	153, 604
RsaNI	GTAC	2 cut(s)	152, 603
SaqAI	TTAA	6 cut(s)	387, 503, 665, 780, 986, 1113
SatI	GCNGC	7 cut(s)	26, 300, 456, 459, 462, 579, 855
Sau3AI	GATC	9 cut(s)	64, 178, 307, 403, 586, 616, 835, 934, 1057
Sau96I	GGNCC	3 cut(s)	194, 195, 415
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	185, 419, 753
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	756
SfcI	CTRYAG	3 cut(s)	300, 456, 553
SinI	GGWCC	1 cut(s)	415
Sse9I	AATT	7 cut(s)	265, 376, 392, 475, 499, 504, 1071
SsiI	CCGC	5 cut(s)	274, 291, 688, 797, 1001
SspMI	CTAG	2 cut(s)	240, 600
StyD4I	CCNGG	3 cut(s)	183, 417, 751
StyI	CCWWGG	2 cut(s)	540, 735
TaaI	ACNGT	3 cut(s)	10, 554, 793
TaqI	TCGA	2 cut(s)	440, 801
TasI	AATT	7 cut(s)	265, 376, 392, 475, 499, 504, 1071
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	3 cut(s)	251, 335, 1093
Tru1I	TTAA	6 cut(s)	387, 503, 665, 780, 986, 1113
Tru9I	TTAA	6 cut(s)	387, 503, 665, 780, 986, 1113
TscAI	CASTG	4 cut(s)	417, 796, 948, 1032
TseFI	GTSAC	2 cut(s)	632, 1033
TseI	GCWGC	7 cut(s)	25, 299, 455, 458, 461, 578, 854
Tsp45I	GTSAC	2 cut(s)	632, 1033
TspDTI	ATGAA	7 cut(s)	212, 405, 528, 628, 685, 692, 1064
TspRI	CASTG	4 cut(s)	417, 796, 948, 1032
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	2 cut(s)	665, 756
XapI	RAATTY	3 cut(s)	392, 475, 1071
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	2 cut(s)	240, 600
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.