Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011027.1

Orthogroup ID

OG0025639

Physical Location & Seq

Genomic Coordinates Reverse (-)

14026 .. 14575

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011027.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgaactgcctttgtggatccattagcattaaagatcttgagaatgtagcaaattcccaaaaggctcgggacgctaagttacaagacaagaaattcctagagacattggtgttgcaatggaagaaaaaagctgcaattgaagcagaagttcttgagcatcttgaacctcattctaggttgaaagagttggaaatcgagaagtttgtccttcgtacttgtccagaatcggtaaccttaccttcaatatgtcacctaacttcacttaaaaagttagagattgacggttgcggcaagcttgcagcattgccagtgggaggactacctagctcactcgaaagtttgaagatttcacagactcgcatctcaaagcagatgtgggaggagggtggcactgagcgggaaaatgtcaaatctattcctgaggtagaaattgatgatcagccaactccaacagggccttttcccatgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

157

Amino Acids

17.45

Weight (kDa)

5.7

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025639)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0011027.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210180
rosa_samantha	Rh6AG074400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	2 cut(s)	288, 397
AclWI	GGATC	2 cut(s)	12, 25
AcsI	RAATTY	2 cut(s)	52, 92
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	140, 164, 181, 243, 343
AluBI	AGCT	3 cut(s)	131, 295, 327
AluI	AGCT	3 cut(s)	131, 295, 327
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	12, 25
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	131, 299
ApoI	RAATTY	2 cut(s)	52, 92
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	66
AxyI	CCTNAGG	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	118, 311
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	98, 174, 324
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	3 cut(s)	132, 289, 300
BlsI	GCNGC	3 cut(s)	133, 290, 301
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	2 cut(s)	166, 369
BpuEI	CTTGAG	2 cut(s)	59, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	308
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	122, 302
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	2 cut(s)	122, 302
BseMII	CTCAG	2 cut(s)	384, 411
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	118, 311
BshFI	GGCC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	17, 34, 436
BspACI	CCGC	2 cut(s)	288, 397
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	385, 412
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	12, 25
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	122, 302
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	17, 34, 436
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	293, 297
BstDEI	CTNAG	3 cut(s)	75, 393, 420
BstEII	GGTNACC	1 cut(s)	229
BstKTI	GATC	3 cut(s)	20, 37, 439
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	17, 34, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 140
BstPI	GGTNACC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	118, 311
BstX2I	RGATCY	2 cut(s)	17, 34
BstYI	RGATCY	2 cut(s)	17, 34
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	315, 390
Cac8I	GCNNGC	2 cut(s)	293, 297
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	466, 471
CviJI	RGCY	6 cut(s)	65, 131, 295, 327, 442, 457
CviKI_1	RGCY	6 cut(s)	65, 131, 295, 327, 442, 457
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	3 cut(s)	75, 393, 420
DpnI	GATC	3 cut(s)	19, 36, 438
DpnII	GATC	3 cut(s)	17, 34, 436
Eco81I	CCTNAGG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	229
FaeI	CATG	2 cut(s)	469, 474
FaiI	YATR	3 cut(s)	247, 467, 472
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	465, 470
FauI	CCCGC	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	132, 289, 300
Fsp4HI	GCNGC	3 cut(s)	132, 289, 300
FspBI	CTAG	3 cut(s)	98, 174, 324
GluI	GCNGC	3 cut(s)	132, 289, 300
HaeIII	GGCC	1 cut(s)	457
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	469, 474
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	2 cut(s)	224, 355
HphI	GGTGA	1 cut(s)	242
Hpy188III	TCNNGA	7 cut(s)	38, 68, 152, 161, 196, 221, 419
HpyAV	CCTTC	2 cut(s)	218, 249
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	115, 134, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 140
HpyF3I	CTNAG	3 cut(s)	75, 393, 420
Hsp92II	CATG	2 cut(s)	469, 474
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	17, 34, 436
LpnPI	CCDG	4 cut(s)	234, 321, 432, 438
Lsp1109I	GCAGC	2 cut(s)	118, 311
LweI	GCATC	2 cut(s)	166, 369
MaeI	CTAG	3 cut(s)	98, 174, 324
MaeIII	GTNAC	3 cut(s)	78, 229, 248
MalI	GATC	3 cut(s)	19, 36, 438
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	3 cut(s)	17, 34, 436
MboII	GAAGA	2 cut(s)	133, 355
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	17, 34
MluCI	AATT	4 cut(s)	52, 92, 135, 429
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	2 cut(s)	168, 473
MnlI	CCTC	5 cut(s)	177, 308, 373, 376, 415
MseI	TTAA	2 cut(s)	30, 264
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	71, 140
NdeII	GATC	3 cut(s)	17, 34, 436
NlaIII	CATG	2 cut(s)	469, 474
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	133, 290, 301
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	17, 34
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	30, 264
SatI	GCNGC	3 cut(s)	132, 289, 300
Sau3AI	GATC	3 cut(s)	17, 34, 436
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	166, 369
SmlI	CTYRAG	2 cut(s)	38, 152
SmoI	CTYRAG	2 cut(s)	38, 152
Sse9I	AATT	4 cut(s)	52, 92, 135, 429
SsiI	CCGC	2 cut(s)	288, 397
SspMI	CTAG	3 cut(s)	98, 174, 324
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	195, 333
TasI	AATT	4 cut(s)	52, 92, 135, 429
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	30, 264
Tru9I	TTAA	2 cut(s)	30, 264
TscAI	CASTG	2 cut(s)	315, 397
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	131, 299
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	315, 397
XapI	RAATTY	2 cut(s)	52, 92
XspI	CTAG	3 cut(s)	98, 174, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.