Rroxscaffold_7G00210180

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025639
Physical Location & Seq
Reverse (-)
60428834 .. 60429388
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210180.1

Sequence Viewer

Length: 480 bp
ATGAACTGCCTTCGTGGATCCATTAGCATTAAAGATCTTGAGAATGTAGCAAATTCCCAAAAGGCTCGGGACGCTAAGTTACAGGACAAGAAATTCCTAGAGACATTGGTGTTGCAATGGAAGAAAAAAGCTGCAATTGAAGCAGAAGTTCTTGAGCATCTTGAACCTCATTCTAGGTTGAAAGAGTTGGAAATCGAGAAGTTTGTCCTTCGTACTTGTCCAGAATCGGTAACCTTACCTTCAATATGTCACCTAACTTCACTTAAAAAGTTAGAGATTGACGGTTGCGGCAAGCTTGCATTATTGCCAGTGGGAGGACTACCTAGCTCACTCGAAAGTATGAAGATTTCACAGACTCGCATCTCAAAGCAGATGTGCGAGGATGGTGGCACTGAGCGGGAAAATGTCAGATCTATTCCTGAGGTAGAAATTGATGATCAGCCAAATCCAACATCACCTTTTCCCATGCCACGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

159

Amino Acids

17.79

Weight (kDa)

6.33

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 1 - 117 5.4e-22 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025639)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0011027.1_g000005
rosa_roxburghii Rroxscaffold_7G00210180
rosa_samantha Rh6AG074400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 397
AciI CCGC 2 cut(s) 288, 397
AclWI GGATC 2 cut(s) 12, 25
AcsI RAATTY 2 cut(s) 52, 92
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 4 cut(s) 140, 164, 181, 243
AluBI AGCT 3 cut(s) 131, 295, 327
AluI AGCT 3 cut(s) 131, 295, 327
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 12, 25
Ama87I CYCGRG 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 52, 92
AsuHPI GGTGA 2 cut(s) 242, 447
AvaI CYCGRG 1 cut(s) 66
AxyI CCTNAGG 1 cut(s) 420
BamHI GGATCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 377
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 3 cut(s) 98, 174, 324
BglII AGATCT 2 cut(s) 34, 410
BisI GCNGC 2 cut(s) 132, 289
BlsI GCNGC 2 cut(s) 133, 290
BmeT110I CYCGRG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 2 cut(s) 166, 369
BpuEI CTTGAG 2 cut(s) 59, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 2 cut(s) 384, 411
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 66
Bsp143I GATC 4 cut(s) 17, 34, 410, 436
BspACI CCGC 2 cut(s) 288, 397
BspCNI CTCAG 2 cut(s) 385, 412
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BsrBI CCGCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 308
BssMI GATC 4 cut(s) 17, 34, 410, 436
Bst4CI ACNGT 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 293, 297
BstDEI CTNAG 3 cut(s) 75, 393, 420
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 4 cut(s) 20, 37, 413, 439
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 17, 34, 410, 436
BstMWI GCNNNNNNNGC 2 cut(s) 71, 140
BstPI GGTNACC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 3 cut(s) 17, 34, 410
BstYI RGATCY 3 cut(s) 17, 34, 410
Bsu36I CCTNAGG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 315, 390
Cac8I GCNNGC 2 cut(s) 293, 297
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 466
CviJI RGCY 5 cut(s) 65, 131, 295, 327, 442
CviKI_1 RGCY 5 cut(s) 65, 131, 295, 327, 442
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 75, 393, 420
DpnI GATC 4 cut(s) 19, 36, 412, 438
DpnII GATC 4 cut(s) 17, 34, 410, 436
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
FaeI CATG 1 cut(s) 469
FaiI YATR 3 cut(s) 247, 341, 467
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 465
FauI CCCGC 1 cut(s) 390
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 132, 289
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 2 cut(s) 132, 289
FspBI CTAG 3 cut(s) 98, 174, 324
GluI GCNGC 2 cut(s) 132, 289
HgaI GACGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 224, 355
HphI GGTGA 2 cut(s) 242, 447
Hpy188I TCNGA 1 cut(s) 410
Hpy188III TCNNGA 7 cut(s) 38, 68, 152, 161, 196, 221, 419
HpyAV CCTTC 3 cut(s) 20, 218, 249
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 115, 134, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 140
HpyF3I CTNAG 3 cut(s) 75, 393, 420
Hsp92II CATG 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 17, 34, 410, 436
LpnPI CCDG 4 cut(s) 68, 234, 321, 432
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 2 cut(s) 166, 369
MaeI CTAG 3 cut(s) 98, 174, 324
MaeIII GTNAC 3 cut(s) 78, 229, 248
MalI GATC 4 cut(s) 19, 36, 412, 438
MbiI CCGCTC 1 cut(s) 397
MboI GATC 4 cut(s) 17, 34, 410, 436
MboII GAAGA 2 cut(s) 133, 355
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 3 cut(s) 17, 34, 410
MluCI AATT 4 cut(s) 52, 92, 135, 429
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 168, 473
MnlI CCTC 4 cut(s) 177, 308, 373, 415
MseI TTAA 2 cut(s) 30, 264
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 71, 140
NdeII GATC 4 cut(s) 17, 34, 410, 436
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 133, 290
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 3 cut(s) 17, 34, 410
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 30, 264
SatI GCNGC 2 cut(s) 132, 289
Sau3AI GATC 4 cut(s) 17, 34, 410, 436
SchI GAGTC 1 cut(s) 349
SfaNI GCATC 2 cut(s) 166, 369
SmlI CTYRAG 2 cut(s) 38, 152
SmoI CTYRAG 2 cut(s) 38, 152
Sse9I AATT 4 cut(s) 52, 92, 135, 429
SsiI CCGC 2 cut(s) 288, 397
SspMI CTAG 3 cut(s) 98, 174, 324
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 195, 333
TasI AATT 4 cut(s) 52, 92, 135, 429
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 30, 264
Tru9I TTAA 2 cut(s) 30, 264
TscAI CASTG 2 cut(s) 315, 397
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 17, 356
TspRI CASTG 2 cut(s) 315, 397
XapI RAATTY 2 cut(s) 52, 92
XspI CTAG 3 cut(s) 98, 174, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.