Rh6AG074400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025639
Physical Location & Seq
Forward (+)
10558353 .. 10569999
11647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG074400.1

Sequence Viewer

Length: 354 bp
ATGAACTGCCTTCGTGGATCCATTAGCATTAAAGATCTTGAGAATGTAGCAAATTCCCAAAAGGCTCGGGACGCTAAGTTACAAGACAAGAAATTCCTAGAGACATTGGTGTTGCAATGGAAGAAAAAAGCTGCAATTGAAGCAGAAGTTCTTGAGCATCTTGAACCTCATTATAGGTTGAAAGAGTTGGAAGTAAACGGCTATCATGGTTCAAAATTGCCAAATTGGATCTGTAGGCCAGCTTCTGTCAACATGCCCTCTCGTCAGATCGAGAAGTTTGTCCTTCGTACTTGTCCAGAATTGGTTAATGGATACCCAGAATTGTACGAGCTTGGGCAATCAACTAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

117

Amino Acids

13.48

Weight (kDa)

8.77

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 1 - 110 6.1e-24 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025639)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0011027.1_g000005
rosa_roxburghii Rroxscaffold_7G00210180
rosa_samantha Rh6AG074400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 25, 236
AcsI RAATTY 2 cut(s) 52, 92
AfaI GTAC 2 cut(s) 289, 326
AgsI TTSAA 4 cut(s) 140, 164, 181, 213
AluBI AGCT 3 cut(s) 131, 242, 331
AluI AGCT 3 cut(s) 131, 242, 331
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 3 cut(s) 12, 25, 236
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 52, 92
AvaI CYCGRG 1 cut(s) 66
BamHI GGATCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 214
BciVI GTATCC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 232
BfuI GTATCC 1 cut(s) 305
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 59, 173
Bse3DI GCAATG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 66
Bsp143I GATC 4 cut(s) 17, 34, 228, 267
BspANI GGCC 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 3 cut(s) 12, 25, 236
BsrDI GCAATG 1 cut(s) 122
BssMI GATC 4 cut(s) 17, 34, 228, 267
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 4 cut(s) 20, 37, 231, 270
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 17, 34, 228, 267
BstMWI GCNNNNNNNGC 2 cut(s) 71, 140
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 3 cut(s) 17, 34, 228
BstYI RGATCY 3 cut(s) 17, 34, 228
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 245
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 288, 325
CviAII CATG 2 cut(s) 206, 253
CviJI RGCY 6 cut(s) 65, 131, 201, 238, 242, 331
CviKI_1 RGCY 6 cut(s) 65, 131, 201, 238, 242, 331
CviQI GTAC 2 cut(s) 288, 325
DdeI CTNAG 1 cut(s) 75
DpnI GATC 4 cut(s) 19, 36, 230, 269
DpnII GATC 4 cut(s) 17, 34, 228, 267
Eco88I CYCGRG 1 cut(s) 66
FaeI CATG 2 cut(s) 209, 256
FaiI YATR 3 cut(s) 174, 207, 254
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 205, 252
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 238
HgaI GACGC 1 cut(s) 80
Hin1II CATG 2 cut(s) 209, 256
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 196, 250
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 6 cut(s) 38, 68, 152, 161, 271, 296
Hpy8I GTNNAC 2 cut(s) 196, 250
HpyAV CCTTC 2 cut(s) 20, 293
HpyCH4V TGCA 2 cut(s) 115, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 140
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 2 cut(s) 209, 256
Kzo9I GATC 4 cut(s) 17, 34, 228, 267
LpnPI CCDG 3 cut(s) 252, 309, 330
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 78
MalI GATC 4 cut(s) 19, 36, 230, 269
MboI GATC 4 cut(s) 17, 34, 228, 267
MboII GAAGA 1 cut(s) 133
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 3 cut(s) 17, 34, 228
MluCI AATT 7 cut(s) 52, 92, 135, 215, 223, 299, 320
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 177, 268
MseI TTAA 2 cut(s) 30, 306
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 71, 140
NdeII GATC 4 cut(s) 17, 34, 228, 267
NlaIII CATG 2 cut(s) 209, 256
NlaIV GGNNCC 1 cut(s) 19
NspI RCATGY 1 cut(s) 256
PkrI GCNGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 3 cut(s) 17, 34, 228
RsaI GTAC 2 cut(s) 289, 326
RsaNI GTAC 2 cut(s) 288, 325
SaqAI TTAA 2 cut(s) 30, 306
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 17, 34, 228, 267
SetI ASST 5 cut(s) 133, 169, 179, 244, 333
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 38, 152
SmoI CTYRAG 2 cut(s) 38, 152
Sse9I AATT 7 cut(s) 52, 92, 135, 215, 223, 299, 320
SspMI CTAG 1 cut(s) 98
TaqI TCGA 1 cut(s) 270
TasI AATT 7 cut(s) 52, 92, 135, 215, 223, 299, 320
Tru1I TTAA 2 cut(s) 30, 306
Tru9I TTAA 2 cut(s) 30, 306
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 52, 92
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.