COP1-interacting protein 7
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G61100 AT1G61100 |
| fragaria_vesca | FvH4_3g04650 |
| malus_domestica | MD05G1321000.v1.1 MD10G1299600.v1.1 |
| prunus_persica | Prupe.4G041200_v2.0.a1 |
| pyrus_communis | pycom05g29580 pycom10g25220 |
| rosa_chinensis | RchiOBHm_Chr5g0007571 |
| rosa_laevigata | RLG00000031473 |
| rosa_multiflora | Rmu_sc0011744.1_g000009 Rmu_sc0033973.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00068780 |
| rosa_rugosa | Rorug04G0428900 Rorug04G0429000 |
| rosa_samantha | Rh5AG057000 Rh5BG054100 Rh5CG063900 Rh5DG053200 |
| rosa_wichuraiana | Rw5G005360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1499 |
| AarI | CACCTGC | 4 cut(s) | 1600, 2501, 2620, 3020 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1045 |
| Acc36I | ACCTGC | 5 cut(s) | 1600, 2501, 2620, 2705, 3020 |
| AccB1I | GGYRCC | 1 cut(s) | 2695 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 926 |
| AccBSI | CCGCTC | 1 cut(s) | 3373 |
| AccI | GTMKAC | 1 cut(s) | 1793 |
| AccIII | TCCGGA | 1 cut(s) | 3501 |
| AciI | CCGC | 7 cut(s) | 414, 1470, 2069, 2558, 2570, 2675, 3371 |
| AclI | AACGTT | 1 cut(s) | 3391 |
| AclWI | GGATC | 6 cut(s) | 1453, 1540, 1595, 2659, 2710, 2871 |
| AcoI | YGGCCR | 1 cut(s) | 1467 |
| AcsI | RAATTY | 6 cut(s) | 1195, 1522, 1675, 2157, 2445, 3458 |
| AcyI | GRCGYC | 1 cut(s) | 543 |
| AdeI | CACNNNGTG | 1 cut(s) | 2870 |
| AfaI | GTAC | 5 cut(s) | 312, 349, 2272, 2415, 2646 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 926, 2822, 2826, 2837, 2867 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2329 |
| AjnI | CCWGG | 4 cut(s) | 47, 1229, 2305, 2698 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 413, 445 |
| Alw26I | GTCTC | 4 cut(s) | 782, 1974, 2316, 3227 |
| AlwI | GGATC | 6 cut(s) | 1453, 1540, 1595, 2659, 2710, 2871 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1784, 2612 |
| Aor13HI | TCCGGA | 1 cut(s) | 3501 |
| AoxI | GGCC | 9 cut(s) | 986, 1467, 1538, 2165, 2202, 2405, 2540, 2828, 3576 |
| ApoI | RAATTY | 6 cut(s) | 1195, 1522, 1675, 2157, 2445, 3458 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2132, 2164, 2917, 2949 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1659, 2215, 2445, 3105, 3210 |
| AspA2I | CCTAGG | 1 cut(s) | 3364 |
| AspLEI | GCGC | 4 cut(s) | 180, 1709, 1835, 3026 |
| AspS9I | GGNCC | 2 cut(s) | 2717, 3368 |
| AsuC2I | CCSGG | 1 cut(s) | 699 |
| AsuHPI | GGTGA | 9 cut(s) | 73, 116, 199, 401, 431, 1581, 1879, 1901, 3391 |
| AvaII | GGWCC | 2 cut(s) | 2717, 3368 |
| AvrII | CCTAGG | 1 cut(s) | 3364 |
| AxyI | CCTNAGG | 2 cut(s) | 2640, 3532 |
| BanI | GGYRCC | 1 cut(s) | 2695 |
| BauI | CACGAG | 1 cut(s) | 504 |
| BbsI | GAAGAC | 1 cut(s) | 1644 |
| BceAI | ACGGC | 3 cut(s) | 847, 862, 2068 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3689, 3723 |
| BciT130I | CCWGG | 4 cut(s) | 49, 1231, 2307, 2700 |
| BclI | TGATCA | 1 cut(s) | 3327 |
| BcnI | CCSGG | 1 cut(s) | 699 |
| BcoDI | GTCTC | 4 cut(s) | 782, 1974, 2316, 3227 |
| BfmI | CTRYAG | 4 cut(s) | 1593, 1776, 2409, 2505 |
| BfoI | RGCGCY | 1 cut(s) | 1836 |
| BfuAI | ACCTGC | 5 cut(s) | 1600, 2501, 2620, 2705, 3020 |
| BlnI | CCTAGG | 1 cut(s) | 3364 |
| BlpI | GCTNAGC | 2 cut(s) | 2037, 2100 |
| Bme1390I | CCNGG | 5 cut(s) | 49, 699, 1231, 2307, 2700 |
| Bme18I | GGWCC | 2 cut(s) | 2717, 3368 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2329 |
| BmgT120I | GGNCC | 2 cut(s) | 2717, 3368 |
| BmiI | GGNNCC | 3 cut(s) | 2697, 3360, 3604 |
| BmrFI | CCNGG | 5 cut(s) | 49, 699, 1231, 2307, 2700 |
| BmrI | ACTGGG | 1 cut(s) | 2657 |
| BmuI | ACTGGG | 1 cut(s) | 2657 |
| BpiI | GAAGAC | 1 cut(s) | 1644 |
| BpmI | CTGGAG | 4 cut(s) | 234, 1213, 2508, 3449 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2037, 2100 |
| BpuEI | CTTGAG | 1 cut(s) | 2933 |
| BpuMI | CCSGG | 1 cut(s) | 699 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2022 |
| BsaHI | GRCGYC | 1 cut(s) | 543 |
| BsaI | GGTCTC | 1 cut(s) | 782 |
| BsaJI | CCNNGG | 6 cut(s) | 432, 925, 2003, 2691, 2820, 3364 |
| BsaWI | WCCGGW | 2 cut(s) | 1906, 3501 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 413, 443, 1709, 1739, 2989, 3019 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 926, 2822, 2826, 2837, 2867 |
| Bse118I | RCCGGY | 2 cut(s) | 1428, 2740 |
| Bse1I | ACTGG | 5 cut(s) | 206, 2652, 3432, 3579, 3604 |
| Bse21I | CCTNAGG | 2 cut(s) | 2640, 3532 |
| Bse3DI | GCAATG | 6 cut(s) | 470, 989, 1765, 2062, 3330, 3522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2022 |
| BseAI | TCCGGA | 1 cut(s) | 3501 |
| BseBI | CCWGG | 4 cut(s) | 49, 1231, 2307, 2700 |
| BseDI | CCNNGG | 6 cut(s) | 432, 925, 2003, 2691, 2820, 3364 |
| BseGI | GGATG | 9 cut(s) | 415, 1006, 1708, 2254, 2281, 2918, 2987, 3498, 3529 |
| BseJI | GATNNNNATC | 1 cut(s) | 2022 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 926, 2822, 2826, 2837, 2867 |
| BseMI | GCAATG | 6 cut(s) | 470, 989, 1765, 2062, 3330, 3522 |
| BseMII | CTCAG | 7 cut(s) | 1055, 1083, 1203, 2028, 2091, 3140, 3546 |
| BseNI | ACTGG | 5 cut(s) | 206, 2652, 3432, 3579, 3604 |
| BseRI | GAGGAG | 2 cut(s) | 1730, 1830 |
| BseYI | CCCAGC | 1 cut(s) | 3014 |
| BsgI | GTGCAG | 1 cut(s) | 2847 |
| BshFI | GGCC | 9 cut(s) | 988, 1469, 1540, 2167, 2204, 2407, 2542, 2830, 3578 |
| BshNI | GGYRCC | 1 cut(s) | 2695 |
| BsiSI | CCGG | 5 cut(s) | 699, 1429, 1907, 2741, 3502 |
| BslFI | GGGAC | 1 cut(s) | 2147 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 926, 2822, 2826, 2837, 2867 |
| BsmAI | GTCTC | 4 cut(s) | 782, 1974, 2316, 3227 |
| BsmBI | CGTCTC | 1 cut(s) | 2316 |
| BsmFI | GGGAC | 1 cut(s) | 2147 |
| BsmI | GAATGC | 1 cut(s) | 1180 |
| BsnI | GGCC | 9 cut(s) | 988, 1469, 1540, 2167, 2204, 2407, 2542, 2830, 3578 |
| Bso31I | GGTCTC | 1 cut(s) | 782 |
| Bsp13I | TCCGGA | 1 cut(s) | 3501 |
| Bsp1407I | TGTACA | 1 cut(s) | 310 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2037, 2100 |
| Bsp19I | CCATGG | 3 cut(s) | 925, 2691, 2820 |
| BspACI | CCGC | 7 cut(s) | 414, 1470, 2069, 2558, 2570, 2675, 3371 |
| BspANI | GGCC | 9 cut(s) | 988, 1469, 1540, 2167, 2204, 2407, 2542, 2830, 3578 |
| BspCNI | CTCAG | 7 cut(s) | 1054, 1084, 1202, 2029, 2092, 3141, 3545 |
| BspEI | TCCGGA | 1 cut(s) | 3501 |
| BspLI | GGNNCC | 3 cut(s) | 2697, 3360, 3604 |
| BspMAI | CTGCAG | 2 cut(s) | 1597, 2509 |
| BspMI | ACCTGC | 5 cut(s) | 1600, 2501, 2620, 2705, 3020 |
| BspPI | GGATC | 6 cut(s) | 1453, 1540, 1595, 2659, 2710, 2871 |
| BspT107I | GGYRCC | 1 cut(s) | 2695 |
| BspTNI | GGTCTC | 1 cut(s) | 782 |
| BsrBI | CCGCTC | 1 cut(s) | 3373 |
| BsrDI | GCAATG | 6 cut(s) | 470, 989, 1765, 2062, 3330, 3522 |
| BsrFI | RCCGGY | 2 cut(s) | 1428, 2740 |
| BsrGI | TGTACA | 1 cut(s) | 310 |
| BsrI | ACTGG | 5 cut(s) | 206, 2652, 3432, 3579, 3604 |
| BssAI | RCCGGY | 2 cut(s) | 1428, 2740 |
| BssECI | CCNNGG | 6 cut(s) | 432, 925, 2003, 2691, 2820, 3364 |
| BssNI | GRCGYC | 1 cut(s) | 543 |
| BssSI | CACGAG | 1 cut(s) | 504 |
| BssT1I | CCWWGG | 5 cut(s) | 432, 925, 2691, 2820, 3364 |
| Bst2BI | CACGAG | 1 cut(s) | 504 |
| Bst2UI | CCWGG | 4 cut(s) | 49, 1231, 2307, 2700 |
| Bst4CI | ACNGT | 4 cut(s) | 1546, 1879, 1968, 2548 |
| Bst6I | CTCTTC | 2 cut(s) | 2480, 2906 |
| BstACI | GRCGYC | 1 cut(s) | 543 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 410, 2189, 2612 |
| BstAUI | TGTACA | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 7 cut(s) | 93, 489, 595, 1009, 2259, 2832, 3549 |
| BstDSI | CCRYGG | 4 cut(s) | 925, 2003, 2691, 2820 |
| BstF5I | GGATG | 9 cut(s) | 415, 1006, 1708, 2254, 2281, 2918, 2987, 3498, 3529 |
| BstH2I | RGCGCY | 1 cut(s) | 1836 |
| BstHHI | GCGC | 4 cut(s) | 180, 1709, 1835, 3026 |
| BstMAI | GTCTC | 4 cut(s) | 782, 1974, 2316, 3227 |
| BstNI | CCWGG | 4 cut(s) | 49, 1231, 2307, 2700 |
| BstNSI | RCATGY | 3 cut(s) | 597, 982, 3718 |
| BstSCI | CCNGG | 5 cut(s) | 47, 697, 1229, 2305, 2698 |
| BstSFI | CTRYAG | 4 cut(s) | 1593, 1776, 2409, 2505 |
| BstV2I | GAAGAC | 1 cut(s) | 1644 |
| BstX2I | RGATCY | 2 cut(s) | 1532, 2876 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1237 |
| BstYI | RGATCY | 2 cut(s) | 1532, 2876 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2640, 3532 |
| BsuRI | GGCC | 9 cut(s) | 988, 1469, 1540, 2167, 2204, 2407, 2542, 2830, 3578 |
| BtgI | CCRYGG | 4 cut(s) | 925, 2003, 2691, 2820 |
| BtgZI | GCGATG | 2 cut(s) | 506, 2486 |
| BtsCI | GGATG | 9 cut(s) | 415, 1006, 1708, 2254, 2281, 2918, 2987, 3498, 3529 |
| BtsI | GCAGTG | 2 cut(s) | 411, 2573 |
| BtsIMutI | CAGTG | 6 cut(s) | 199, 411, 2573, 3330, 3586, 3763 |
| BveI | ACCTGC | 5 cut(s) | 1600, 2501, 2620, 2705, 3020 |
| Cac8I | GCNNGC | 7 cut(s) | 93, 489, 595, 1009, 2259, 2832, 3549 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1784, 2612 |
| CfoI | GCGC | 4 cut(s) | 180, 1709, 1835, 3026 |
| Cfr10I | RCCGGY | 2 cut(s) | 1428, 2740 |
| Cfr13I | GGNCC | 2 cut(s) | 2717, 3368 |
| CseI | GACGC | 2 cut(s) | 551, 2333 |
| CsiI | ACCWGGT | 1 cut(s) | 47 |
| Csp6I | GTAC | 5 cut(s) | 311, 348, 2271, 2414, 2645 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2760, 2795 |
| CviQI | GTAC | 5 cut(s) | 311, 348, 2271, 2414, 2645 |
| DraI | TTTAAA | 1 cut(s) | 378 |
| DraIII | CACNNNGTG | 1 cut(s) | 2870 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1045 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2329 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1045 |
| EaeI | YGGCCR | 1 cut(s) | 1467 |
| Eam1104I | CTCTTC | 2 cut(s) | 2480, 2906 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2329 |
| EarI | CTCTTC | 2 cut(s) | 2480, 2906 |
| Eco130I | CCWWGG | 5 cut(s) | 432, 925, 2691, 2820, 3364 |
| Eco147I | AGGCCT | 2 cut(s) | 2407, 2830 |
| Eco31I | GGTCTC | 1 cut(s) | 782 |
| Eco32I | GATATC | 2 cut(s) | 932, 2374 |
| Eco47I | GGWCC | 2 cut(s) | 2717, 3368 |
| Eco81I | CCTNAGG | 2 cut(s) | 2640, 3532 |
| EcoRII | CCWGG | 4 cut(s) | 47, 1229, 2305, 2698 |
| EcoRV | GATATC | 2 cut(s) | 932, 2374 |
| EcoT14I | CCWWGG | 5 cut(s) | 432, 925, 2691, 2820, 3364 |
| EcoT22I | ATGCAT | 3 cut(s) | 568, 599, 3638 |
| ErhI | CCWWGG | 5 cut(s) | 432, 925, 2691, 2820, 3364 |
| Esp3I | CGTCTC | 1 cut(s) | 2316 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1168, 1200 |
| FaqI | GGGAC | 1 cut(s) | 2147 |
| FauNDI | CATATG | 1 cut(s) | 1993 |
| FbaI | TGATCA | 1 cut(s) | 3327 |
| FblI | GTMKAC | 1 cut(s) | 1793 |
| FokI | GGATG | 9 cut(s) | 422, 1013, 1715, 2261, 2288, 2905, 2974, 3485, 3536 |
| GlaI | GCGC | 4 cut(s) | 179, 1708, 1834, 3025 |
| GsaI | CCCAGC | 1 cut(s) | 3018 |
| GsuI | CTGGAG | 4 cut(s) | 234, 1213, 2508, 3449 |
| HaeII | RGCGCY | 1 cut(s) | 1836 |
| HaeIII | GGCC | 9 cut(s) | 988, 1469, 1540, 2167, 2204, 2407, 2542, 2830, 3578 |
| HapII | CCGG | 5 cut(s) | 699, 1429, 1907, 2741, 3502 |
| HgaI | GACGC | 2 cut(s) | 551, 2333 |
| HhaI | GCGC | 4 cut(s) | 180, 1709, 1835, 3026 |
| Hin1I | GRCGYC | 1 cut(s) | 543 |
| Hin6I | GCGC | 4 cut(s) | 178, 1707, 1833, 3024 |
| HinP1I | GCGC | 4 cut(s) | 178, 1707, 1833, 3024 |
| HincII | GTYRAC | 1 cut(s) | 1050 |
| HindII | GTYRAC | 1 cut(s) | 1050 |
| HindIII | AAGCTT | 1 cut(s) | 2971 |
| HpaII | CCGG | 5 cut(s) | 699, 1429, 1907, 2741, 3502 |
| HphI | GGTGA | 9 cut(s) | 73, 116, 199, 401, 431, 1581, 1879, 1901, 3391 |
| HpyCH4III | ACNGT | 4 cut(s) | 1546, 1879, 1968, 2548 |
| HpyCH4IV | ACGT | 2 cut(s) | 580, 3391 |
| HpySE526I | ACGT | 2 cut(s) | 580, 3391 |
| Hsp92I | GRCGYC | 1 cut(s) | 543 |
| HspAI | GCGC | 4 cut(s) | 178, 1707, 1833, 3024 |
| Kpn2I | TCCGGA | 1 cut(s) | 3501 |
| Ksp22I | TGATCA | 1 cut(s) | 3327 |
| MabI | ACCWGGT | 1 cut(s) | 47 |
| MaeII | ACGT | 2 cut(s) | 580, 3391 |
| MaeIII | GTNAC | 3 cut(s) | 53, 1127, 2622 |
| MbiI | CCGCTC | 1 cut(s) | 3373 |
| MfeI | CAATTG | 1 cut(s) | 3343 |
| MflI | RGATCY | 2 cut(s) | 1532, 2876 |
| MlyI | GAGTC | 7 cut(s) | 1033, 1124, 2129, 2156, 2938, 3475, 3755 |
| MmeI | TCCRAC | 5 cut(s) | 62, 133, 1632, 1790, 2124 |
| Mph1103I | ATGCAT | 3 cut(s) | 568, 599, 3638 |
| MroI | TCCGGA | 1 cut(s) | 3501 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1659, 2215, 2445, 3105, 3210 |
| MslI | CAYNNNNRTG | 2 cut(s) | 633, 3641 |
| MspA1I | CMGCKG | 4 cut(s) | 362, 1598, 1781, 3014 |
| MspI | CCGG | 5 cut(s) | 699, 1429, 1907, 2741, 3502 |
| MspR9I | CCNGG | 5 cut(s) | 49, 699, 1231, 2307, 2700 |
| MunI | CAATTG | 1 cut(s) | 3343 |
| Mva1269I | GAATGC | 1 cut(s) | 1180 |
| MvaI | CCWGG | 4 cut(s) | 49, 1231, 2307, 2700 |
| NciI | CCSGG | 1 cut(s) | 699 |
| NcoI | CCATGG | 3 cut(s) | 925, 2691, 2820 |
| NdeI | CATATG | 1 cut(s) | 1993 |
| NlaIV | GGNNCC | 3 cut(s) | 2697, 3360, 3604 |
| NmuCI | GTSAC | 3 cut(s) | 53, 1127, 2622 |
| NsiI | ATGCAT | 3 cut(s) | 568, 599, 3638 |
| NspI | RCATGY | 3 cut(s) | 597, 982, 3718 |
| PaeI | GCATGC | 1 cut(s) | 597 |
| PaqCI | CACCTGC | 4 cut(s) | 1600, 2501, 2620, 3020 |
| PceI | AGGCCT | 2 cut(s) | 2407, 2830 |
| PctI | GAATGC | 1 cut(s) | 1180 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1659, 2215, 2445, 3105, 3210 |
| PflFI | GACNNNGTC | 1 cut(s) | 1643 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 926 |
| PfoI | TCCNGGA | 2 cut(s) | 1229, 2305 |
| PleI | GAGTC | 7 cut(s) | 1033, 1124, 2129, 2155, 2938, 3474, 3754 |
| PpsI | GAGTC | 7 cut(s) | 1033, 1124, 2129, 2155, 2938, 3474, 3754 |
| PsiI | TTATAA | 1 cut(s) | 1499 |
| Psp1406I | AACGTT | 1 cut(s) | 3391 |
| Psp6I | CCWGG | 4 cut(s) | 47, 1229, 2305, 2698 |
| PspFI | CCCAGC | 1 cut(s) | 3014 |
| PspGI | CCWGG | 4 cut(s) | 47, 1229, 2305, 2698 |
| PspN4I | GGNNCC | 3 cut(s) | 2697, 3360, 3604 |
| PspPI | GGNCC | 2 cut(s) | 2717, 3368 |
| PstI | CTGCAG | 2 cut(s) | 1597, 2509 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1784, 2612 |
| PsuI | RGATCY | 2 cut(s) | 1532, 2876 |
| PsyI | GACNNNGTC | 1 cut(s) | 1643 |
| PvuII | CAGCTG | 4 cut(s) | 362, 1598, 1781, 3014 |
| RsaI | GTAC | 5 cut(s) | 312, 349, 2272, 2415, 2646 |
| RsaNI | GTAC | 5 cut(s) | 311, 348, 2271, 2414, 2645 |
| RseI | CAYNNNNRTG | 2 cut(s) | 633, 3641 |
| Sau96I | GGNCC | 2 cut(s) | 2717, 3368 |
| SchI | GAGTC | 7 cut(s) | 1033, 1124, 2129, 2156, 2938, 3475, 3755 |
| ScrFI | CCNGG | 5 cut(s) | 49, 699, 1231, 2307, 2700 |
| SexAI | ACCWGGT | 1 cut(s) | 47 |
| SfcI | CTRYAG | 4 cut(s) | 1593, 1776, 2409, 2505 |
| SinI | GGWCC | 2 cut(s) | 2717, 3368 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 633, 3641 |
| SmlI | CTYRAG | 1 cut(s) | 2948 |
| SmoI | CTYRAG | 1 cut(s) | 2948 |
| SphI | GCATGC | 1 cut(s) | 597 |
| SseBI | AGGCCT | 2 cut(s) | 2407, 2830 |
| SsiI | CCGC | 7 cut(s) | 414, 1470, 2069, 2558, 2570, 2675, 3371 |
| SspI | AATATT | 2 cut(s) | 1252, 3116 |
| StuI | AGGCCT | 2 cut(s) | 2407, 2830 |
| StyD4I | CCNGG | 5 cut(s) | 47, 697, 1229, 2305, 2698 |
| StyI | CCWWGG | 5 cut(s) | 432, 925, 2691, 2820, 3364 |
| TaaI | ACNGT | 4 cut(s) | 1546, 1879, 1968, 2548 |
| TaiI | ACGT | 2 cut(s) | 583, 3394 |
| TaqI | TCGA | 7 cut(s) | 43, 1026, 1419, 1519, 1972, 2138, 2320 |
| TatI | WGTACW | 2 cut(s) | 310, 2413 |
| TauI | GCSGC | 2 cut(s) | 416, 1472 |
| TscAI | CASTG | 5 cut(s) | 206, 411, 2580, 3337, 3586 |
| TseFI | GTSAC | 3 cut(s) | 53, 1127, 2622 |
| Tsp45I | GTSAC | 3 cut(s) | 53, 1127, 2622 |
| TspGWI | ACGGA | 6 cut(s) | 924, 1641, 1670, 1992, 2288, 2359 |
| TspRI | CASTG | 5 cut(s) | 206, 411, 2580, 3337, 3586 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1643 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 926 |
| VpaK11BI | GGWCC | 2 cut(s) | 2717, 3368 |
| XapI | RAATTY | 6 cut(s) | 1195, 1522, 1675, 2157, 2445, 3458 |
| XbaI | TCTAGA | 2 cut(s) | 152, 826 |
| XceI | RCATGY | 3 cut(s) | 597, 982, 3718 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 55 |
| XmaJI | CCTAGG | 1 cut(s) | 3364 |
| XmiI | GTMKAC | 1 cut(s) | 1793 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1659, 2215, 2445, 3105, 3210 |
| Zsp2I | ATGCAT | 3 cut(s) | 568, 599, 3638 |