Rorug04G0428900

COP1-interacting protein 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011159
Physical Location & Seq
Reverse (-)
58646641 .. 58648788
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0428900.1

Sequence Viewer

Length: 621 bp
ATGTACTCATCAAAGCCGAGCTCTTACGAGAAGTTCTCGGAGACCACCGATGCTTCTCCGCCAACGGGTATTCCGGTGAGCTCCAGCAACCCCTATTATAGTCATCCTGCTCATCATCAACATCCTGATCAATATGACAAGAACAACTCTGAAATGCCTGCTCCTCATCCTTATCAACACCACACTAGAGCCCCTGGGCCGTGGAAATCCGGTCTCTGCGACTGCTTCTCCGATCCCAAAAACTGCTGCATAACCTTTTGTTGTCCATGCATCACTTTTGGTCAAATTGCTGAGATTGTGGACAAAGGTTCTACATCTTGTGGTGCAAGTGGAGCACTGTACACACTGATAGCTTGTGTGACTACTTGTCCTTGCATCTATTCATGCTTCTACCGCTCGAAGATGAGGCGGCAGTACGCTTTGGAATCGAGCCCTTGTGGTGATTGTTTGGTTCACTTCTTCTGCGAGCAATGCGCCTTGTGCCAGGAGTACCGTGAGCTCAAGAGTCGCGGTTTTGACATGGCCATCGGATGGCATGGAAATATCGAAGAAAGGAACCGTGAAGTGGCAATGGCTCCAATGCCCCCAATGGTGGAGGAAGGCATGAGTCGCGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

6.12

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 68 - 166 2.4e-35 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61100 AT1G61100
fragaria_vesca FvH4_3g04650
malus_domestica MD05G1321000.v1.1 MD10G1299600.v1.1
prunus_persica Prupe.4G041200_v2.0.a1
pyrus_communis pycom05g29580 pycom10g25220
rosa_chinensis RchiOBHm_Chr5g0007571
rosa_laevigata RLG00000031473
rosa_multiflora Rmu_sc0011744.1_g000009 Rmu_sc0033973.1_g000001
rosa_roxburghii Rroxscaffold_1G00068780
rosa_rugosa Rorug04G0428900 Rorug04G0429000
rosa_samantha Rh5AG057000 Rh5BG054100 Rh5CG063900 Rh5DG053200
rosa_wichuraiana Rw5G005360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 531
AccBSI CCGCTC 1 cut(s) 396
AccII CGCG 2 cut(s) 510, 612
AciI CCGC 4 cut(s) 59, 394, 409, 510
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 522
AfaI GTAC 4 cut(s) 5, 341, 416, 491
AfiI CCNNNNNNNGG 4 cut(s) 65, 531, 565, 592
AhdI GACNNNNNGTC 1 cut(s) 366
AjnI CCWGG 2 cut(s) 193, 483
AluBI AGCT 4 cut(s) 21, 81, 353, 499
AluI AGCT 4 cut(s) 21, 81, 353, 499
Alw21I GWGCWC 4 cut(s) 23, 83, 337, 501
Alw26I GTCTC 2 cut(s) 35, 218
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 197, 522
ApeKI GCWGC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 88, 452
BalI TGGCCA 1 cut(s) 524
BanII GRGCYC 5 cut(s) 23, 83, 193, 434, 501
Bbv12I GWGCWC 4 cut(s) 23, 83, 337, 501
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 525, 533
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 195, 485
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 35, 218
BfaI CTAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 247, 410
BlsI GCNGC 2 cut(s) 248, 411
Bme1390I CCNGG 2 cut(s) 195, 485
BmeRI GACNNNNNGTC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 557, 576
BmrFI CCNGG 2 cut(s) 195, 485
BmsI GCATC 3 cut(s) 40, 279, 384
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 485
BsaI GGTCTC 2 cut(s) 35, 218
BsaJI CCNNGG 3 cut(s) 193, 194, 200
BsaWI WCCGGW 2 cut(s) 73, 209
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 531, 565, 592
Bse3DI GCAATG 2 cut(s) 476, 576
BseBI CCWGG 2 cut(s) 195, 485
BseDI CCNNGG 3 cut(s) 193, 194, 200
BseGI GGATG 4 cut(s) 103, 121, 166, 536
BseLI CCNNNNNNNGG 4 cut(s) 65, 531, 565, 592
BseMI GCAATG 2 cut(s) 476, 576
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 233
Bsh1236I CGCG 2 cut(s) 510, 612
BshFI GGCC 2 cut(s) 199, 524
BsiHKAI GWGCWC 4 cut(s) 23, 83, 337, 501
BsiSI CCGG 2 cut(s) 74, 210
BslI CCNNNNNNNGG 4 cut(s) 65, 531, 565, 592
BsmAI GTCTC 2 cut(s) 35, 218
BsnI GGCC 2 cut(s) 199, 524
Bso31I GGTCTC 2 cut(s) 35, 218
Bsp1286I GDGCHC 6 cut(s) 23, 83, 193, 337, 434, 501
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 127, 232
Bsp68I TCGCGA 1 cut(s) 612
BspACI CCGC 4 cut(s) 59, 394, 409, 510
BspANI GGCC 2 cut(s) 199, 524
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 2 cut(s) 510, 612
BspLI GGNNCC 2 cut(s) 557, 576
BspPI GGATC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 35, 218
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 476, 576
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 193, 194, 200
BssMI GATC 2 cut(s) 127, 232
Bst2UI CCWGG 2 cut(s) 195, 485
Bst4CI ACNGT 3 cut(s) 339, 494, 560
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 159, 467
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 4 cut(s) 103, 121, 166, 536
BstFNI CGCG 2 cut(s) 510, 612
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 2 cut(s) 130, 235
BstMAI GTCTC 2 cut(s) 35, 218
BstMBI GATC 2 cut(s) 127, 232
BstMWI GCNNNNNNNGC 5 cut(s) 332, 393, 471, 480, 609
BstNI CCWGG 2 cut(s) 195, 485
BstSCI CCNGG 2 cut(s) 193, 483
BstUI CGCG 2 cut(s) 510, 612
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 2 cut(s) 199, 524
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 4 cut(s) 103, 121, 166, 536
BtsIMutI CAGTG 2 cut(s) 335, 344
BtuMI TCGCGA 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 159, 467
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 4, 340, 415, 490
CviAII CATG 5 cut(s) 267, 384, 520, 536, 604
CviQI GTAC 4 cut(s) 4, 340, 415, 490
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 129, 234
DpnII GATC 2 cut(s) 127, 232
DriI GACNNNNNGTC 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 522
Eam1105I GACNNNNNGTC 1 cut(s) 366
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 3 cut(s) 21, 81, 499
Eco24I GRGCYC 5 cut(s) 23, 83, 193, 434, 501
Eco31I GGTCTC 2 cut(s) 35, 218
Eco53kI GAGCTC 3 cut(s) 21, 81, 499
EcoICRI GAGCTC 3 cut(s) 21, 81, 499
EcoRII CCWGG 2 cut(s) 193, 483
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 5 cut(s) 23, 83, 193, 434, 501
FaeI CATG 5 cut(s) 270, 387, 523, 539, 607
FaiI YATR 8 cut(s) 99, 135, 251, 268, 385, 521, 537, 605
FatI CATG 5 cut(s) 266, 383, 519, 535, 603
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 247, 410
FokI GGATG 4 cut(s) 90, 108, 153, 543
FriOI GRGCYC 5 cut(s) 23, 83, 193, 434, 501
Fsp4HI GCNGC 2 cut(s) 247, 410
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 475
GluI GCNGC 2 cut(s) 247, 410
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 2 cut(s) 199, 524
HapII CCGG 2 cut(s) 74, 210
HhaI GCGC 1 cut(s) 476
Hin1II CATG 5 cut(s) 270, 387, 523, 539, 607
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 3 cut(s) 425, 505, 607
HpaII CCGG 2 cut(s) 74, 210
HphI GGTGA 2 cut(s) 88, 452
Hpy166II GTNNAC 3 cut(s) 301, 342, 454
Hpy188I TCNGA 4 cut(s) 40, 151, 232, 530
Hpy188III TCNNGA 3 cut(s) 125, 502, 611
Hpy8I GTNNAC 3 cut(s) 301, 342, 454
HpyAV CCTTC 1 cut(s) 593
HpyCH4III ACNGT 3 cut(s) 339, 494, 560
HpyCH4V TGCA 4 cut(s) 249, 270, 326, 375
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 393, 471, 480, 609
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 5 cut(s) 270, 387, 523, 539, 607
HspAI GCGC 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 127, 232
LmnI GCTCC 4 cut(s) 86, 166, 332, 580
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 3 cut(s) 40, 279, 384
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 129, 234
MbiI CCGCTC 1 cut(s) 396
MboI GATC 2 cut(s) 127, 232
MboII GAAGA 3 cut(s) 412, 451, 560
MhlI GDGCHC 6 cut(s) 23, 83, 193, 337, 434, 501
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 1 cut(s) 285
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 2 cut(s) 514, 616
MnlI CCTC 3 cut(s) 174, 399, 589
Mox20I TGGCCA 1 cut(s) 524
Mph1103I ATGCAT 1 cut(s) 272
MscI TGGCCA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 524
MspI CCGG 2 cut(s) 74, 210
MspR9I CCNGG 2 cut(s) 195, 485
MvaI CCWGG 2 cut(s) 195, 485
MvnI CGCG 2 cut(s) 510, 612
MwoI GCNNNNNNNGC 5 cut(s) 332, 393, 471, 480, 609
NdeII GATC 2 cut(s) 127, 232
NlaIII CATG 5 cut(s) 270, 387, 523, 539, 607
NlaIV GGNNCC 2 cut(s) 557, 576
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 358
NruI TCGCGA 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 272
PasI CCCWGGG 1 cut(s) 194
PfeI GAWTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 531
PkrI GCNGC 2 cut(s) 248, 411
PleI GAGTC 2 cut(s) 513, 615
PpsI GAGTC 2 cut(s) 513, 615
Psp124BI GAGCTC 3 cut(s) 23, 83, 501
Psp6I CCWGG 2 cut(s) 193, 483
PspGI CCWGG 2 cut(s) 193, 483
PspN4I GGNNCC 2 cut(s) 557, 576
PspPI GGNCC 1 cut(s) 197
RruI TCGCGA 1 cut(s) 612
RsaI GTAC 4 cut(s) 5, 341, 416, 491
RsaNI GTAC 4 cut(s) 4, 340, 415, 490
SacI GAGCTC 3 cut(s) 23, 83, 501
SatI GCNGC 2 cut(s) 247, 410
Sau3AI GATC 2 cut(s) 127, 232
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 514, 616
ScrFI CCNGG 2 cut(s) 195, 485
SduI GDGCHC 6 cut(s) 23, 83, 193, 337, 434, 501
SetI ASST 6 cut(s) 23, 83, 257, 310, 355, 501
SfaNI GCATC 3 cut(s) 40, 279, 384
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 1 cut(s) 285
SsiI CCGC 4 cut(s) 59, 394, 409, 510
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 3 cut(s) 23, 83, 501
StyD4I CCNGG 2 cut(s) 193, 483
TaaI ACNGT 3 cut(s) 339, 494, 560
TaqI TCGA 3 cut(s) 398, 428, 546
TasI AATT 1 cut(s) 285
TatI WGTACW 2 cut(s) 3, 339
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 1 cut(s) 425
TscAI CASTG 2 cut(s) 342, 351
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 2 cut(s) 342, 351
Van91I CCANNNNNTGG 1 cut(s) 531
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.