Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011875.1

Orthogroup ID

OG0018628

Physical Location & Seq

Genomic Coordinates Reverse (-)

15648 .. 16688

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011875.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgcaatctcttcgtcttcctctctttcacttcctccaccgcactacttcaccactaaagccaacaagacccttcttccaaatccgcctccacactcgtttccaagcctcatcgaatcatcatccatcgcaaacgacacaacccatcaaaaacgacaccgtcactcacgagttccgcttcttccgggtatacgaatccggccgggtcgagaaattccaccaaacccacaaaatcccaccctccgacgacccgataaccggagtccgatccaaagacgtcgtcatcccctccgaacccgccatctccgcccgcatcttcctccccttgatccgcgacccgacccggacactccccgtcctcttccacgtccacggcggcggcttctccttcgaatccgcattctcccctcacatacacaactacgtcaggactctatcctccgaggctgacgtcatcgccgtctcggtcgagtacaggctggcaccggagcacccgatcccggcctgctacgacgattcatgggccgctctgagatgggtcgcggatcatcgtaacggaaacggacccgagccctggttgaacgattacgccgactttgaccgggtctttgtcgccggggacagcgccggaggaaacatttcgcattacctggcggctcgggtcgggtcgttgggtttacccggggtgaaattagtcggggcggttctggtgcatccgtattttggcgggaccgaagatgatgccatgtggctatacatgtgtcgcgataacaatgggttgcaggatagtaggttgagaccgagcgtagaggatctgagaaggcttgggtgtgagagggtgttggtgtttgttgctgagaaggatcatttgaatggtgtggggaagaattatgtggaggaattgaagaagagtgggtggaaagggagtgtggagattgtagagaatgaaggagaggatcattgcttccatttagaggatctcagatatgagaaagctgtggctttgattaggaggtttgcttcattcattaagcaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

346

Amino Acids

39.29

Weight (kDa)

6.86

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0258371
rosa_laevigata	RLG00000014617
rosa_multiflora	Rmu_sc0004926.1_g000001 Rmu_sc0011875.1_g000006
rosa_roxburghii	Rroxscaffold_178G00437390 Rroxscaffold_178G00437410 Rroxscaffold_7G00205560 Rroxscaffold_7G00205580
rosa_rugosa	Rorug05G0581400
rosa_samantha	Rh6CG086100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	279, 453
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	3 cut(s)	333, 542, 765
AclWI	GGATC	8 cut(s)	261, 322, 490, 552, 819, 870, 963, 984
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	276, 450
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	5 cut(s)	257, 499, 573, 722, 973
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	580, 871, 904
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	572, 648
AluBI	AGCT	1 cut(s)	995
AluI	AGCT	1 cut(s)	995
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	466, 790
AlwI	GGATC	8 cut(s)	261, 322, 490, 552, 819, 870, 963, 984
Ama87I	CYCGRG	3 cut(s)	566, 657, 680
AoxI	GGCC	3 cut(s)	199, 501, 522
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	4 cut(s)	264, 296, 590, 622
Asp700I	GAANNNNTTC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	3 cut(s)	522, 563, 729
AsuC2I	CCSGG	8 cut(s)	185, 203, 343, 500, 602, 616, 681, 682
AsuHPI	GGTGA	2 cut(s)	42, 697
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	3 cut(s)	566, 657, 680
AvaII	GGWCC	2 cut(s)	563, 729
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	573
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	492
BccI	CCATC	4 cut(s)	133, 152, 308, 528
BceAI	ACGGC	2 cut(s)	388, 443
BcgI	CGANNNNNNTGC	3 cut(s)	27, 722, 756
BciT130I	CCWGG	2 cut(s)	574, 650
BcnI	CCSGG	8 cut(s)	185, 203, 343, 500, 602, 616, 681, 682
BcoDI	GTCTC	2 cut(s)	466, 790
BfoI	RGCGCY	1 cut(s)	627
BisI	GCNGC	4 cut(s)	376, 379, 525, 654
BlsI	GCNGC	4 cut(s)	377, 380, 526, 655
Bme18I	GGWCC	2 cut(s)	563, 729
BmeT110I	CYCGRG	3 cut(s)	566, 657, 680
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	522, 563, 729
BmiI	GGNNCC	3 cut(s)	483, 565, 730
BmsI	GCATC	3 cut(s)	321, 721, 730
BpiI	GAAGAC	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	390
BpuMI	CCSGG	8 cut(s)	185, 203, 343, 500, 602, 616, 681, 682
BsaHI	GRCGYC	2 cut(s)	276, 450
BsaI	GGTCTC	1 cut(s)	790
BsaJI	CCNNGG	6 cut(s)	370, 441, 572, 615, 680, 681
BsaWI	WCCGGW	2 cut(s)	257, 484
Bsc4I	CCNNNNNNNGG	5 cut(s)	257, 499, 573, 722, 973
Bse1I	ACTGG	1 cut(s)	1036
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	574, 650
BseDI	CCNNGG	6 cut(s)	370, 441, 572, 615, 680, 681
BseGI	GGATG	3 cut(s)	121, 282, 712
BseLI	CCNNNNNNNGG	5 cut(s)	257, 499, 573, 722, 973
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	4 cut(s)	521, 806, 846, 994
BseNI	ACTGG	1 cut(s)	1036
BseX3I	CGGCCG	1 cut(s)	199
Bsh1236I	CGCG	3 cut(s)	333, 542, 765
Bsh1285I	CGRYCG	2 cut(s)	202, 468
BshFI	GGCC	3 cut(s)	201, 503, 524
BshNI	GGYRCC	1 cut(s)	481
BsiEI	CGRYCG	2 cut(s)	202, 468
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	3 cut(s)	566, 657, 680
BslFI	GGGAC	2 cut(s)	632, 742
BslI	CCNNNNNNNGG	5 cut(s)	257, 499, 573, 722, 973
BsmAI	GTCTC	2 cut(s)	466, 790
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	632, 742
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	201, 503, 524
Bso31I	GGTCTC	1 cut(s)	790
BsoBI	CYCGRG	3 cut(s)	566, 657, 680
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	492, 573
Bsp143I	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
Bsp68I	TCGCGA	1 cut(s)	765
BspANI	GGCC	3 cut(s)	201, 503, 524
BspCNI	CTCAG	4 cut(s)	522, 807, 847, 993
BspFNI	CGCG	3 cut(s)	333, 542, 765
BspLI	GGNNCC	3 cut(s)	483, 565, 730
BspPI	GGATC	8 cut(s)	261, 322, 490, 552, 819, 870, 963, 984
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	790
BsrBI	CCGCTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	1036
BssECI	CCNNGG	6 cut(s)	370, 441, 572, 615, 680, 681
BssMI	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
BssNAI	GTATAC	1 cut(s)	190
BssNI	GRCGYC	2 cut(s)	276, 450
BssSI	CACGAG	1 cut(s)	167
Bst1107I	GTATAC	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	574, 650
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	3 cut(s)	15, 365, 902
BstACI	GRCGYC	2 cut(s)	276, 450
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	310, 480, 505
BstDEI	CTNAG	4 cut(s)	530, 815, 855, 980
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	121, 282, 712
BstFNI	CGCG	3 cut(s)	333, 542, 765
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	8 cut(s)	269, 330, 498, 547, 814, 865, 958, 979
BstMAI	GTCTC	2 cut(s)	466, 790
BstMBI	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
BstMCI	CGRYCG	2 cut(s)	202, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	574, 650
BstNSI	RCATGY	1 cut(s)	760
BstUI	CGCG	3 cut(s)	333, 542, 765
BstV2I	GAAGAC	1 cut(s)	8
BstX2I	RGATCY	2 cut(s)	811, 976
BstYI	RGATCY	2 cut(s)	811, 976
BstZ17I	GTATAC	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	201, 503, 524
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	2 cut(s)	111, 439
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	121, 282, 712
BtuMI	TCGCGA	1 cut(s)	765
Cac8I	GCNNGC	3 cut(s)	310, 480, 505
CfoI	GCGC	1 cut(s)	626
Cfr13I	GGNCC	3 cut(s)	522, 563, 729
Cfr9I	CCCGGG	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	3 cut(s)	519, 745, 757
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	4 cut(s)	530, 815, 855, 980
DpnI	GATC	8 cut(s)	268, 329, 497, 546, 813, 864, 957, 978
DpnII	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	15, 365, 902
EarI	CTCTTC	3 cut(s)	15, 365, 902
EciI	GGCGGA	2 cut(s)	74, 295
EclXI	CGGCCG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	563, 729
Eco52I	CGGCCG	1 cut(s)	199
Eco88I	CYCGRG	3 cut(s)	566, 657, 680
EcoRII	CCWGG	2 cut(s)	572, 648
EcoT38I	GRGCYC	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	3 cut(s)	522, 748, 760
FaiI	YATR	8 cut(s)	190, 413, 520, 746, 754, 758, 891, 987
FaqI	GGGAC	2 cut(s)	632, 742
FatI	CATG	3 cut(s)	518, 744, 756
FauI	CCCGC	3 cut(s)	304, 317, 719
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	376, 379, 525, 654
FokI	GGATG	3 cut(s)	108, 269, 699
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	4 cut(s)	376, 379, 525, 654
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	4 cut(s)	376, 379, 525, 654
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	201, 503, 524
HhaI	GCGC	1 cut(s)	626
Hin1I	GRCGYC	2 cut(s)	276, 450
Hin1II	CATG	3 cut(s)	522, 748, 760
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HinfI	GANTC	6 cut(s)	115, 194, 261, 392, 430, 515
HphI	GGTGA	2 cut(s)	42, 697
Hpy166II	GTNNAC	3 cut(s)	190, 370, 677
Hpy188I	TCNGA	7 cut(s)	244, 266, 292, 442, 531, 816, 983
Hpy188III	TCNNGA	4 cut(s)	167, 208, 427, 764
Hpy8I	GTNNAC	3 cut(s)	190, 370, 677
Hpy99I	CGWCG	3 cut(s)	248, 281, 515
HpyAV	CCTTC	5 cut(s)	82, 397, 813, 853, 941
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	4 cut(s)	276, 366, 423, 450
HpyCH4V	TGCA	3 cut(s)	4, 712, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	530, 815, 855, 980
HpySE526I	ACGT	4 cut(s)	276, 366, 423, 450
Hsp92I	GRCGYC	2 cut(s)	276, 450
Hsp92II	CATG	3 cut(s)	522, 748, 760
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
LmnI	GCTCC	1 cut(s)	487
LweI	GCATC	3 cut(s)	321, 721, 730
MaeII	ACGT	4 cut(s)	276, 366, 423, 450
MaeIII	GTNAC	2 cut(s)	160, 551
MalI	GATC	8 cut(s)	268, 329, 497, 546, 813, 864, 957, 978
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
MboII	GAAGA	9 cut(s)	8, 67, 172, 307, 352, 746, 895, 916, 919
MflI	RGATCY	2 cut(s)	811, 976
MhlI	GDGCHC	2 cut(s)	492, 573
MluCI	AATT	4 cut(s)	212, 689, 886, 899
MlyI	GAGTC	2 cut(s)	270, 424
MmeI	TCCRAC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	1 cut(s)	1029
MslI	CAYNNNNRTG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	574, 650
MvnI	CGCG	3 cut(s)	333, 542, 765
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	8 cut(s)	185, 203, 343, 500, 602, 616, 681, 682
NdeII	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
NlaIII	CATG	3 cut(s)	522, 748, 760
NlaIV	GGNNCC	3 cut(s)	483, 565, 730
NmuCI	GTSAC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	765
NspI	RCATGY	1 cut(s)	760
NspV	TTCGAA	1 cut(s)	390
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	2 cut(s)	456, 588
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	637
PfeI	GAWTC	4 cut(s)	115, 194, 392, 515
PflFI	GACNNNGTC	3 cut(s)	158, 278, 602
PkrI	GCNGC	4 cut(s)	377, 380, 526, 655
PleI	GAGTC	2 cut(s)	269, 424
PpsI	GAGTC	2 cut(s)	269, 424
PscI	ACATGT	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	572, 648
PspGI	CCWGG	2 cut(s)	572, 648
PspN4I	GGNNCC	3 cut(s)	483, 565, 730
PspPI	GGNCC	3 cut(s)	522, 563, 729
PsuI	RGATCY	2 cut(s)	811, 976
PsyI	GACNNNGTC	3 cut(s)	158, 278, 602
RruI	TCGCGA	1 cut(s)	765
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	4 cut(s)	376, 379, 525, 654
Sau3AI	GATC	8 cut(s)	266, 327, 495, 544, 811, 862, 955, 976
Sau96I	GGNCC	3 cut(s)	522, 563, 729
SchI	GAGTC	2 cut(s)	270, 424
SduI	GDGCHC	2 cut(s)	492, 573
SetI	ASST	8 cut(s)	279, 369, 426, 453, 651, 794, 997, 1016
SfaNI	GCATC	3 cut(s)	321, 721, 730
SfuI	TTCGAA	1 cut(s)	390
SinI	GGWCC	2 cut(s)	563, 729
SmaI	CCCGGG	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	870
Sse9I	AATT	4 cut(s)	212, 689, 886, 899
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	4 cut(s)	279, 369, 426, 453
TaqI	TCGA	4 cut(s)	113, 207, 390, 468
TaqII	GACCGA	3 cut(s)	454, 746, 814
TasI	AATT	4 cut(s)	212, 689, 886, 899
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	4 cut(s)	378, 381, 527, 656
TfiI	GAWTC	4 cut(s)	115, 194, 392, 515
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	507, 960, 1011, 1015
TspGWI	ACGGA	3 cut(s)	570, 576, 705
TspMI	CCCGGG	1 cut(s)	680
Tth111I	GACNNNGTC	3 cut(s)	158, 278, 602
VpaK11BI	GGWCC	2 cut(s)	563, 729
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	760
XmaI	CCCGGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	637
ZraI	GACGTC	2 cut(s)	277, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.