Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000178

Orthogroup ID

OG0018628

Physical Location & Seq

Genomic Coordinates Reverse (-)

163832 .. 166544

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_178G00437390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATAATGACACACCCATTCTTTGGTGGGTCGGAGAAGGATGACAGAATGTGGTTGTACATCTGTCCGGCGAATGGCGGGGTGCAGGATAGGAGGCTGAACCGCCTCCAGAGGATTTTGCAAGGCTCGCCGCAAAACCCTGTCGCTCCTCCGATGCAGTCTCTTCGTCTTCCTCTCTTTCACTTTCTCCACCGCACCACTTCGCCACAAAACCTTACAAGACCCTTCTTCCAAATTCGCCTCCACACTCGTTCCCAAGCCTCATCTAATCGCAACCCATCAAAAACGACACAACCCATCAAAAACGACACCGTCACTCACGAGTTCCGCTTCTTCCGGGTATACGAATCCGGCCGGGTCGAGAAATTCCACCAAACCCATAAAATCCCACCCTCCGACGACCCGATTACCGGTGTCCGATCCAAAGACGTCGTCATCTCCTCCGAACCCGCCATCTCCGCCCGCATCTTCCTCCCCTTGATCCGCGACCCGACCCGGAAACTCCCCGTCCTCTTCCACGTCCACGGCGGCGGATTCTCCTTCGAATCCGCATTCTCCCCTCACATACACAACTACGTCAGGACTCTATCCTCCGAGGCTGATGTCATCGCCGTCTCGGTCGAGTACAGGCTAGCACCGGAGCACCCGATCCCGGCCTGCTACGACGATTCATGGGCCGCTCTGAAATGGGTCGCGGATCATCGTAAGGGAAACGGACCCGAGCCCTGGTTGAACGATTACGCCGACTTTGACCGGGTCTTTGTCGCCGGGGACAGCGCCGGAGGAAACATTTCGCATTATCTGGCGGCTCGGGTTGGGTCGTTGGGTTTACCCGGAGTGAAATTAGTCGGGGCGGTTCTGGTGCATCCGTATTTTGGTGGGACTGATGATGATGCCATGTGGCTGTACATGTGTTGCGATAACAATGGGTTGCAGGATAGCAGGTTGAGGCCTAGCGTAGAGGATCTGAGAAGGCTTGGGTGTGAGAGGGTGTTGGTGTTTGTTGCTGAGAAGGATCATTTGAATGGTGTGGGGAAGAAATATGTGGAGGAATTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATTGTAGAGAATGAAGGAGAGGATCATTGCTTCCATTTAGAGGATCTCAGATATGAGAAAGCTGTGGCTTTGATTGGGAGGTTTGCTTCATTCATTAAGCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

397

Amino Acids

44.89

Weight (kDa)

8.17

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	155 - 269	2.7e-07	Carboxylesterase family
BD-FAE	PF20434	165 - 269	3.4e-10	BD-FAE
Abhydrolase_3	PF07859	171 - 374	4.2e-44	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0258371
rosa_laevigata	RLG00000014617
rosa_multiflora	Rmu_sc0004926.1_g000001 Rmu_sc0011875.1_g000006
rosa_roxburghii	Rroxscaffold_178G00437390 Rroxscaffold_178G00437410 Rroxscaffold_7G00205560 Rroxscaffold_7G00205580
rosa_rugosa	Rorug05G0581400
rosa_samantha	Rh6CG086100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	933
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	2 cut(s)	486, 695
AclWI	GGATC	8 cut(s)	414, 475, 643, 705, 972, 1023, 1116, 1137
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	234, 365
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	3 cut(s)	59, 626, 908
AfiI	CCNNNNNNNGG	7 cut(s)	23, 74, 410, 652, 726, 875, 1126
AflIII	ACRYGT	1 cut(s)	909
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	733, 1024, 1057
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	1 cut(s)	1148
AluI	AGCT	1 cut(s)	1148
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	165, 619
AlwI	GGATC	8 cut(s)	414, 475, 643, 705, 972, 1023, 1116, 1137
Ama87I	CYCGRG	2 cut(s)	719, 810
AoxI	GGCC	4 cut(s)	352, 654, 675, 950
ApoI	RAATTY	2 cut(s)	234, 365
ArsI	GACNNNNNNTTYG	4 cut(s)	417, 449, 743, 775
AsiGI	ACCGGT	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	2 cut(s)	675, 716
AsuC2I	CCSGG	7 cut(s)	338, 356, 496, 653, 755, 769, 834
AsuII	TTCGAA	1 cut(s)	543
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	2 cut(s)	719, 810
AvaII	GGWCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	726
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	645
BccI	CCATC	3 cut(s)	286, 305, 461
BceAI	ACGGC	2 cut(s)	541, 596
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	727
BcnI	CCSGG	7 cut(s)	338, 356, 496, 653, 755, 769, 834
BcoDI	GTCTC	2 cut(s)	165, 619
BfaI	CTAG	2 cut(s)	632, 954
BfoI	RGCGCY	1 cut(s)	780
BfuAI	ACCTGC	1 cut(s)	933
BisI	GCNGC	4 cut(s)	131, 529, 678, 807
BlsI	GCNGC	4 cut(s)	132, 530, 679, 808
Bme1390I	CCNGG	8 cut(s)	338, 356, 496, 653, 727, 755, 769, 834
Bme18I	GGWCC	1 cut(s)	716
BmeT110I	CYCGRG	2 cut(s)	719, 810
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	675, 716
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	8 cut(s)	338, 356, 496, 653, 727, 755, 769, 834
BmsI	GCATC	4 cut(s)	144, 474, 874, 883
BmtI	GCTAGC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	543
BpuMI	CCSGG	7 cut(s)	338, 356, 496, 653, 755, 769, 834
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	523, 594, 725, 768
BsaWI	WCCGGW	2 cut(s)	410, 637
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 74, 410, 652, 726, 875, 1126
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	1189
Bse3DI	GCAATG	1 cut(s)	1111
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	4 cut(s)	523, 594, 725, 768
BseGI	GGATG	2 cut(s)	46, 865
BseLI	CCNNNNNNNGG	7 cut(s)	23, 74, 410, 652, 726, 875, 1126
BseMI	GCAATG	1 cut(s)	1111
BseMII	CTCAG	3 cut(s)	959, 999, 1147
BseNI	ACTGG	1 cut(s)	1189
BseRI	GAGGAG	2 cut(s)	138, 430
BseX3I	CGGCCG	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	2 cut(s)	486, 695
Bsh1285I	CGRYCG	2 cut(s)	355, 621
BshFI	GGCC	4 cut(s)	354, 656, 677, 952
BshTI	ACCGGT	1 cut(s)	410
BsiEI	CGRYCG	2 cut(s)	355, 621
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	2 cut(s)	719, 810
BslFI	GGGAC	2 cut(s)	785, 895
BslI	CCNNNNNNNGG	7 cut(s)	23, 74, 410, 652, 726, 875, 1126
BsmAI	GTCTC	2 cut(s)	165, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	785, 895
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	354, 656, 677, 952
BsoBI	CYCGRG	2 cut(s)	719, 810
Bsp119I	TTCGAA	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	645, 726
Bsp1407I	TGTACA	2 cut(s)	57, 906
Bsp143I	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
BspANI	GGCC	4 cut(s)	354, 656, 677, 952
BspCNI	CTCAG	3 cut(s)	960, 1000, 1146
BspFNI	CGCG	2 cut(s)	486, 695
BspLI	GGNNCC	1 cut(s)	718
BspMI	ACCTGC	1 cut(s)	933
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	8 cut(s)	414, 475, 643, 705, 972, 1023, 1116, 1137
BspT104I	TTCGAA	1 cut(s)	543
BsrBI	CCGCTC	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	1111
BsrFI	RCCGGY	1 cut(s)	410
BsrGI	TGTACA	2 cut(s)	57, 906
BsrI	ACTGG	1 cut(s)	1189
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	4 cut(s)	523, 594, 725, 768
BssMI	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	320
Bst1107I	GTATAC	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	3 cut(s)	168, 518, 1055
BstACI	GRCGYC	1 cut(s)	429
BstAUI	TGTACA	2 cut(s)	57, 906
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	128, 463, 633, 658
BstDEI	CTNAG	3 cut(s)	968, 1008, 1133
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	46, 865
BstFNI	CGCG	2 cut(s)	486, 695
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	8 cut(s)	422, 483, 651, 700, 967, 1018, 1111, 1132
BstMAI	GTCTC	2 cut(s)	165, 619
BstMBI	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
BstMCI	CGRYCG	2 cut(s)	355, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 458
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	8 cut(s)	336, 354, 494, 651, 725, 753, 767, 832
BstUI	CGCG	2 cut(s)	486, 695
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	964, 1129
BstYI	RGATCY	2 cut(s)	964, 1129
BstZ17I	GTATAC	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	354, 656, 677, 952
BtgI	CCRYGG	1 cut(s)	523
BtgZI	GCGATG	1 cut(s)	592
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	46, 865
BveI	ACCTGC	1 cut(s)	933
Cac8I	GCNNGC	4 cut(s)	128, 463, 633, 658
CfoI	GCGC	1 cut(s)	779
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	675, 716
Csp6I	GTAC	3 cut(s)	58, 625, 907
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	3 cut(s)	672, 898, 910
CviQI	GTAC	3 cut(s)	58, 625, 907
DdeI	CTNAG	3 cut(s)	968, 1008, 1133
DpnI	GATC	8 cut(s)	421, 482, 650, 699, 966, 1017, 1110, 1131
DpnII	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
EaeI	YGGCCR	1 cut(s)	352
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	3 cut(s)	168, 518, 1055
EarI	CTCTTC	3 cut(s)	168, 518, 1055
EciI	GGCGGA	2 cut(s)	448, 546
EclXI	CGGCCG	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	952
Eco24I	GRGCYC	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	716
Eco52I	CGGCCG	1 cut(s)	352
Eco88I	CYCGRG	2 cut(s)	719, 810
EcoRII	CCWGG	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	3 cut(s)	675, 901, 913
FaiI	YATR	8 cut(s)	343, 381, 566, 673, 899, 911, 1044, 1140
FaqI	GGGAC	2 cut(s)	785, 895
FatI	CATG	3 cut(s)	671, 897, 909
FauI	CCCGC	3 cut(s)	71, 457, 470
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	131, 529, 678, 807
FokI	GGATG	2 cut(s)	53, 852
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	4 cut(s)	131, 529, 678, 807
FspBI	CTAG	2 cut(s)	632, 954
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	4 cut(s)	131, 529, 678, 807
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	4 cut(s)	354, 656, 677, 952
HhaI	GCGC	1 cut(s)	779
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	675, 901, 913
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	347, 534, 545, 583, 668
Hpy166II	GTNNAC	3 cut(s)	343, 523, 830
Hpy188I	TCNGA	9 cut(s)	34, 153, 397, 419, 445, 595, 684, 969, 1136
Hpy188III	TCNNGA	4 cut(s)	109, 320, 361, 580
Hpy8I	GTNNAC	3 cut(s)	343, 523, 830
Hpy99I	CGWCG	3 cut(s)	401, 434, 668
HpyAV	CCTTC	6 cut(s)	31, 235, 550, 966, 1006, 1094
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	3 cut(s)	429, 519, 576
HpyCH4V	TGCA	5 cut(s)	85, 121, 157, 865, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 458
HpyF3I	CTNAG	3 cut(s)	968, 1008, 1133
HpySE526I	ACGT	3 cut(s)	429, 519, 576
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	675, 901, 913
HspAI	GCGC	1 cut(s)	777
Kzo9I	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
LmnI	GCTCC	2 cut(s)	151, 640
LweI	GCATC	4 cut(s)	144, 474, 874, 883
MaeI	CTAG	2 cut(s)	632, 954
MaeII	ACGT	3 cut(s)	429, 519, 576
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	8 cut(s)	421, 482, 650, 699, 966, 1017, 1110, 1131
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
MboII	GAAGA	9 cut(s)	155, 161, 220, 325, 460, 505, 1048, 1069, 1072
MflI	RGATCY	2 cut(s)	964, 1129
MhlI	GDGCHC	2 cut(s)	645, 726
MluCI	AATT	4 cut(s)	234, 365, 842, 1052
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	2 cut(s)	12, 420
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	1 cut(s)	1182
MslI	CAYNNNNRTG	1 cut(s)	1023
MspR9I	CCNGG	8 cut(s)	338, 356, 496, 653, 727, 755, 769, 834
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	2 cut(s)	486, 695
MwoI	GCNNNNNNNGC	2 cut(s)	127, 458
NciI	CCSGG	7 cut(s)	338, 356, 496, 653, 755, 769, 834
NdeII	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	3 cut(s)	675, 901, 913
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	913
NspV	TTCGAA	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	952
PciI	ACATGT	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	4 cut(s)	347, 534, 545, 668
PflFI	GACNNNGTC	3 cut(s)	311, 431, 755
PflMI	CCANNNNNTGG	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	132, 530, 679, 808
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PscI	ACATGT	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	2 cut(s)	675, 716
PsuI	RGATCY	2 cut(s)	964, 1129
PsyI	GACNNNGTC	3 cut(s)	311, 431, 755
RsaI	GTAC	3 cut(s)	59, 626, 908
RsaNI	GTAC	3 cut(s)	58, 625, 907
RseI	CAYNNNNRTG	1 cut(s)	1023
SaqAI	TTAA	1 cut(s)	1182
SatI	GCNGC	4 cut(s)	131, 529, 678, 807
Sau3AI	GATC	8 cut(s)	419, 480, 648, 697, 964, 1015, 1108, 1129
Sau96I	GGNCC	2 cut(s)	675, 716
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	8 cut(s)	338, 356, 496, 653, 727, 755, 769, 834
SduI	GDGCHC	2 cut(s)	645, 726
SetI	ASST	7 cut(s)	216, 432, 522, 579, 947, 1150, 1169
SfaNI	GCATC	4 cut(s)	144, 474, 874, 883
SfuI	TTCGAA	1 cut(s)	543
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	1023
Sse9I	AATT	4 cut(s)	234, 365, 842, 1052
SseBI	AGGCCT	1 cut(s)	952
SspMI	CTAG	2 cut(s)	632, 954
StuI	AGGCCT	1 cut(s)	952
StyD4I	CCNGG	8 cut(s)	336, 354, 494, 651, 725, 753, 767, 832
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	3 cut(s)	432, 522, 579
TaqI	TCGA	3 cut(s)	360, 543, 621
TaqII	GACCGA	1 cut(s)	607
TasI	AATT	4 cut(s)	234, 365, 842, 1052
TatI	WGTACW	3 cut(s)	57, 624, 906
TauI	GCSGC	4 cut(s)	133, 531, 680, 809
TfiI	GAWTC	4 cut(s)	347, 534, 545, 668
Tru1I	TTAA	1 cut(s)	1182
Tru9I	TTAA	1 cut(s)	1182
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	660, 1113, 1164, 1168
TspGWI	ACGGA	2 cut(s)	729, 858
Tth111I	GACNNNGTC	3 cut(s)	311, 431, 755
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	2 cut(s)	234, 365
XceI	RCATGY	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	2 cut(s)	632, 954
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.