Rroxscaffold_7G00205580

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018628
Physical Location & Seq
Reverse (-)
55131616 .. 55132451
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205580.1

Sequence Viewer

Length: 726 bp
ATGCAATCTCTTCGTCTTCCTCTCTTTCACTTCCTCTACCGCACCACTTCACCACTAAACCCTACAAGACCCTTCTTCCAAATCCGCCTCCACACTCGTTCCCAAGTCTCATCTAATCATCATCCAACACAAACGACACAACCCATCAAAAACGACACTGTCACTCACGAGTTCCGCTTCTTCAGTGTATACGAATCCGGCTGGGTCGAGAAATTCCACCAAACCCATAAAATCCCTGGAAACTCCCCGTCCTCTTCCACGTTGGCACCGGAGCACCCGATCCCGGCCTGCTACGACGATTCATGGGTCGCAGATCATTGTAAGGGAAACGGACCCGAGCCCTGGTTGAACGATTACGCCTACTTTGACCGGGTCTTTGTCGTCGGGGACAGCTCTAGAGGAAACATTTCACATGATCTGGTGGTTCCGGTCGTGTCGTTGGGTTTACCCGAAGTGAAATTAGTCGGGGCGGTTTTGGTGCATCCGTATTTTGGTGGGACTGATGATGATGCCATGTGGCTGTACATGTTTCGCGATAACAATGGGTTGCAGGATAAGAGGTTGAGACCGAGTGTAAAGGATCTGAGAAGGCATGGGTGTGAGAGGGTGTTGGTGTTTGTTGCTGAGAAGGATCATTTGAATGGTGTGGGGAAGAATTATGTGGAGGAATTGAAGAAGAGTGGGTGGAAAGGGACTGTGGAGATTGTAGAGAACGAAGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

241

Amino Acids

27.44

Weight (kDa)

6.67

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 88 - 239 1.1e-15 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 534
AciI CCGC 4 cut(s) 40, 85, 175, 470
AclWI GGATC 3 cut(s) 274, 588, 639
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 3 cut(s) 283, 342, 491
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 3 cut(s) 349, 640, 673
AjnI CCWGG 2 cut(s) 235, 341
AluBI AGCT 2 cut(s) 393, 722
AluI AGCT 2 cut(s) 393, 722
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 112, 559
AlwI GGATC 3 cut(s) 274, 588, 639
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
Asp700I GAANNNNTTC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 2 cut(s) 284, 371
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 342
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 237, 343
BcnI CCSGG 2 cut(s) 284, 371
BcoDI GTCTC 2 cut(s) 112, 559
BfaI CTAG 1 cut(s) 396
Bme1390I CCNGG 4 cut(s) 237, 284, 343, 371
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 3 cut(s) 267, 334, 426
BmrFI CCNGG 4 cut(s) 237, 284, 343, 371
BmsI GCATC 2 cut(s) 490, 499
BpiI GAAGAC 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 284, 371
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 2 cut(s) 235, 341
BsaWI WCCGGW 2 cut(s) 268, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 342, 491
BseBI CCWGG 2 cut(s) 237, 343
BseDI CCNNGG 2 cut(s) 235, 341
BseGI GGATG 2 cut(s) 121, 481
BseLI CCNNNNNNNGG 3 cut(s) 283, 342, 491
BseMII CTCAG 2 cut(s) 575, 615
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 5 cut(s) 198, 269, 284, 370, 428
BslFI GGGAC 3 cut(s) 401, 511, 706
BslI CCNNNNNNNGG 3 cut(s) 283, 342, 491
BsmAI GTCTC 2 cut(s) 112, 559
BsmFI GGGAC 3 cut(s) 401, 511, 706
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 276, 342
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 5 cut(s) 279, 313, 415, 580, 631
Bsp68I TCGCGA 1 cut(s) 534
BspACI CCGC 4 cut(s) 40, 85, 175, 470
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 576, 616
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 267, 334, 426
BspPI GGATC 3 cut(s) 274, 588, 639
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 522
BssECI CCNNGG 2 cut(s) 235, 341
BssMI GATC 5 cut(s) 279, 313, 415, 580, 631
BssNAI GTATAC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 167
Bst1107I GTATAC 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 237, 343
Bst4CI ACNGT 2 cut(s) 160, 697
Bst6I CTCTTC 3 cut(s) 15, 259, 671
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 584, 624
BstF5I GGATG 2 cut(s) 121, 481
BstFNI CGCG 1 cut(s) 534
BstKTI GATC 5 cut(s) 282, 316, 418, 583, 634
BstMAI GTCTC 2 cut(s) 112, 559
BstMBI GATC 5 cut(s) 279, 313, 415, 580, 631
BstMCI CGRYCG 1 cut(s) 432
BstNI CCWGG 2 cut(s) 237, 343
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 4 cut(s) 235, 282, 341, 369
BstUI CGCG 1 cut(s) 534
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BstZ17I GTATAC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 121, 481
BtsIMutI CAGTG 2 cut(s) 156, 190
BtuMI TCGCGA 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 523
CviAII CATG 5 cut(s) 303, 413, 514, 526, 593
CviJI RGCY 6 cut(s) 201, 287, 340, 393, 520, 722
CviKI_1 RGCY 6 cut(s) 201, 287, 340, 393, 520, 722
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 2 cut(s) 584, 624
DpnI GATC 5 cut(s) 281, 315, 417, 582, 633
DpnII GATC 5 cut(s) 279, 313, 415, 580, 631
Eam1104I CTCTTC 3 cut(s) 15, 259, 671
EarI CTCTTC 3 cut(s) 15, 259, 671
EciI GGCGGA 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 235, 341
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 5 cut(s) 306, 416, 517, 529, 596
FaiI YATR 8 cut(s) 190, 228, 304, 414, 515, 527, 594, 660
FaqI GGGAC 3 cut(s) 401, 511, 706
FatI CATG 5 cut(s) 302, 412, 513, 525, 592
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 108, 468
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 287
HapII CCGG 5 cut(s) 198, 269, 284, 370, 428
Hin1II CATG 5 cut(s) 306, 416, 517, 529, 596
HinfI GANTC 2 cut(s) 194, 299
HpaII CCGG 5 cut(s) 198, 269, 284, 370, 428
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 190, 446
Hpy188I TCNGA 1 cut(s) 585
Hpy188III TCNNGA 4 cut(s) 167, 208, 396, 533
Hpy8I GTNNAC 2 cut(s) 190, 446
Hpy99I CGWCG 2 cut(s) 299, 386
HpyAV CCTTC 4 cut(s) 82, 582, 622, 710
HpyCH4III ACNGT 2 cut(s) 160, 697
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 4, 481, 550
HpyF3I CTNAG 2 cut(s) 584, 624
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 5 cut(s) 306, 416, 517, 529, 596
Kzo9I GATC 5 cut(s) 279, 313, 415, 580, 631
LmnI GCTCC 2 cut(s) 271, 719
LweI GCATC 2 cut(s) 490, 499
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 160
MalI GATC 5 cut(s) 281, 315, 417, 582, 633
MboI GATC 5 cut(s) 279, 313, 415, 580, 631
MboII GAAGA 7 cut(s) 8, 67, 172, 246, 664, 685, 688
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 2 cut(s) 276, 342
MluCI AATT 4 cut(s) 212, 458, 655, 668
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 8 cut(s) 30, 44, 98, 262, 392, 552, 597, 658
MroXI GAANNNNTTC 1 cut(s) 406
MslI CAYNNNNRTG 2 cut(s) 597, 639
MspI CCGG 5 cut(s) 198, 269, 284, 370, 428
MspR9I CCNGG 4 cut(s) 237, 284, 343, 371
MvaI CCWGG 2 cut(s) 237, 343
MvnI CGCG 1 cut(s) 534
NciI CCSGG 2 cut(s) 284, 371
NdeII GATC 5 cut(s) 279, 313, 415, 580, 631
NlaIII CATG 5 cut(s) 306, 416, 517, 529, 596
NlaIV GGNNCC 3 cut(s) 267, 334, 426
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 534
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 194, 299
PflFI GACNNNGTC 2 cut(s) 158, 371
PscI ACATGT 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 235, 341
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 235, 341
PspN4I GGNNCC 3 cut(s) 267, 334, 426
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 580
PsyI GACNNNGTC 2 cut(s) 158, 371
RruI TCGCGA 1 cut(s) 534
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 2 cut(s) 597, 639
Sau3AI GATC 5 cut(s) 279, 313, 415, 580, 631
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 4 cut(s) 237, 284, 343, 371
SduI GDGCHC 2 cut(s) 276, 342
SetI ASST 4 cut(s) 263, 395, 563, 724
SfaNI GCATC 2 cut(s) 490, 499
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 597, 639
Sse9I AATT 4 cut(s) 212, 458, 655, 668
SsiI CCGC 4 cut(s) 40, 85, 175, 470
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 235, 282, 341, 369
TaaI ACNGT 2 cut(s) 160, 697
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 207
TaqII GACCGA 1 cut(s) 583
TasI AATT 4 cut(s) 212, 458, 655, 668
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 194, 299
TscAI CASTG 2 cut(s) 163, 190
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 2 cut(s) 345, 474
TspRI CASTG 2 cut(s) 163, 190
Tth111I GACNNNGTC 2 cut(s) 158, 371
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 395
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.