Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012557.1

Orthogroup ID

OG0025552

Physical Location & Seq

Genomic Coordinates Forward (+)

24938 .. 25573

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012557.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtctggtgtgacttgctgtttgaggttccctgggcaactcaactctgacctcagaaagttggctgtcaatctcattccattcccccgtctccactttttcattccattcctggtgggatgttttaatgcagaaaaagttgatatgcatgatcttcaggtgcggtatgctccacacatgccacttgtgttgcggggtctcacatgttccttccctggaggaatgaaaactgggattgtggggagaactggcagtggaaagtcaactctcatacaaactcttttccgaattgtcgatcctgctgctggctggattttgatagatggcatcgatatctcttctattggattgcatgatctgaggtctaggctaagcattatccctcaggacccaaccatgtttgaaggaactgtaagaagcaatctggacccacttgaggagtatacagatgaacaaatttgggaggttagttcattttaccctgaggatgatacgaagcttctttttaaatattgttcattgtcagatttgcagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

179

Amino Acids

20.07

Weight (kDa)

5.5

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025552)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003089.1_g000020 Rmu_sc0012557.1_g000005 Rmu_sc0024456.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	443
AciI	CCGC	2 cut(s)	163, 193
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	305, 436
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	3 cut(s)	31, 111, 214
AluBI	AGCT	2 cut(s)	499, 535
AluI	AGCT	2 cut(s)	499, 535
Alw26I	GTCTC	2 cut(s)	95, 203
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	302, 532
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	388, 427
AvaII	GGWCC	2 cut(s)	388, 427
AxyI	CCTNAGG	2 cut(s)	384, 483
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	3 cut(s)	33, 113, 216
BcoDI	GTCTC	2 cut(s)	95, 203
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	303, 533
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	304, 534
Bme1390I	CCNGG	3 cut(s)	33, 113, 216
Bme18I	GGWCC	2 cut(s)	388, 427
BmgT120I	GGNCC	2 cut(s)	388, 427
BmiI	GGNNCC	3 cut(s)	29, 390, 429
BmrFI	CCNGG	3 cut(s)	33, 113, 216
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	31, 32, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 436
Bse1I	ACTGG	2 cut(s)	235, 253
Bse21I	CCTNAGG	2 cut(s)	384, 483
BseBI	CCWGG	3 cut(s)	33, 113, 216
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	31, 32, 214
BseGI	GGATG	2 cut(s)	125, 493
BseLI	CCNNNNNNNGG	2 cut(s)	305, 436
BseMII	CTCAG	4 cut(s)	67, 350, 398, 474
BseNI	ACTGG	2 cut(s)	235, 253
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	305, 436
BsmAI	GTCTC	2 cut(s)	95, 203
BsmBI	CGTCTC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	151, 295, 355
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	163, 193
BspCNI	CTCAG	4 cut(s)	66, 351, 397, 475
BspDI	ATCGAT	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	29, 390, 429
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	235, 253
BssECI	CCNNGG	3 cut(s)	31, 32, 214
BssMI	GATC	3 cut(s)	151, 295, 355
BssNAI	GTATAC	1 cut(s)	444
Bst1107I	GTATAC	1 cut(s)	444
Bst2UI	CCWGG	3 cut(s)	33, 113, 216
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	5 cut(s)	53, 359, 371, 384, 483
BstF5I	GGATG	2 cut(s)	125, 493
BstKTI	GATC	3 cut(s)	154, 298, 358
BstMAI	GTCTC	2 cut(s)	95, 203
BstMBI	GATC	3 cut(s)	151, 295, 355
BstNI	CCWGG	3 cut(s)	33, 113, 216
BstNSI	RCATGY	2 cut(s)	181, 207
BstSCI	CCNGG	3 cut(s)	31, 111, 214
BstV1I	GCAGC	1 cut(s)	289
BstZ17I	GTATAC	1 cut(s)	444
Bsu15I	ATCGAT	1 cut(s)	330
Bsu36I	CCTNAGG	2 cut(s)	384, 483
BsuTUI	ATCGAT	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	125, 493
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	388, 427
ClaI	ATCGAT	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	5 cut(s)	149, 178, 204, 353, 397
CviJI	RGCY	5 cut(s)	65, 309, 370, 499, 535
CviKI_1	RGCY	5 cut(s)	65, 309, 370, 499, 535
DdeI	CTNAG	5 cut(s)	53, 359, 371, 384, 483
DpnI	GATC	3 cut(s)	153, 297, 357
DpnII	GATC	3 cut(s)	151, 295, 355
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	388, 427
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	2 cut(s)	384, 483
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	31, 111, 214
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	5 cut(s)	152, 181, 207, 356, 400
FaiI	YATR	9 cut(s)	146, 150, 168, 179, 205, 272, 354, 398, 444
FatI	CATG	5 cut(s)	148, 177, 203, 352, 396
FauI	CCCGC	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	303, 533
FokI	GGATG	2 cut(s)	132, 500
Fsp4HI	GCNGC	2 cut(s)	303, 533
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	303, 533
GsuI	CTGGAG	1 cut(s)	237
Hin1II	CATG	5 cut(s)	152, 181, 207, 356, 400
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	264, 444
Hpy188I	TCNGA	5 cut(s)	49, 56, 287, 360, 526
Hpy188III	TCNNGA	2 cut(s)	386, 425
Hpy8I	GTNNAC	2 cut(s)	264, 444
HpyAV	CCTTC	2 cut(s)	220, 398
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	4 cut(s)	131, 148, 352, 532
HpyF3I	CTNAG	5 cut(s)	53, 359, 371, 384, 483
Hsp92II	CATG	5 cut(s)	152, 181, 207, 356, 400
Kzo9I	GATC	3 cut(s)	151, 295, 355
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	153, 297, 357
MboI	GATC	3 cut(s)	151, 295, 355
MboII	GAAGA	2 cut(s)	146, 330
MluCI	AATT	2 cut(s)	288, 456
MnlI	CCTC	8 cut(s)	18, 62, 212, 354, 393, 430, 457, 478
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	2 cut(s)	126, 507
MspR9I	CCNGG	3 cut(s)	33, 113, 216
MvaI	CCWGG	3 cut(s)	33, 113, 216
NdeII	GATC	3 cut(s)	151, 295, 355
NlaIII	CATG	5 cut(s)	152, 181, 207, 356, 400
NlaIV	GGNNCC	3 cut(s)	29, 390, 429
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	2 cut(s)	181, 207
PasI	CCCWGGG	1 cut(s)	32
PciI	ACATGT	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	304, 534
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	31, 111, 214
PspGI	CCWGG	3 cut(s)	31, 111, 214
PspN4I	GGNNCC	3 cut(s)	29, 390, 429
PspPI	GGNCC	2 cut(s)	388, 427
PspPPI	RGGWCCY	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	126, 507
SatI	GCNGC	2 cut(s)	303, 533
Sau3AI	GATC	3 cut(s)	151, 295, 355
Sau96I	GGNCC	2 cut(s)	388, 427
ScrFI	CCNGG	3 cut(s)	33, 113, 216
SetI	ASST	7 cut(s)	29, 54, 162, 365, 468, 501, 537
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	2 cut(s)	388, 427
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	288, 456
SsiI	CCGC	2 cut(s)	163, 193
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	31, 111, 214
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	2 cut(s)	294, 330
TasI	AATT	2 cut(s)	288, 456
Tru1I	TTAA	2 cut(s)	126, 507
Tru9I	TTAA	2 cut(s)	126, 507
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	302, 532
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	91, 239, 462, 465, 507
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	388, 427
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	2 cut(s)	181, 207
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.