Rmu_sc0012876.1_g000004
NAC Family

inactive protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012876.1
OG0021323
Physical Location & Seq
Forward (+)
8051 .. 12422
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012876.1_g000004.1.cds

Sequence Viewer

Length: 627 bp
atgtgccgggaagtcgccggaaaatggccggaaaagtcgccggaaaataagcttccggtggccggttcggtggttttccggccggttcttgaggtggggctgccggttctggactcctggaatcgagttcttcaaggtgtgagctcagctcaatcgccgtcgccgtcgccgttcttattggaaaacgcgcttttggcgctttggtttggttgcagtcagttagctctctctactttgttatctctgcgctgcgttttgcgcccggtgtcgtcgtttaatgctcagctcgattcaatgagattgctctcttcctttacaaatggcttccgcttcttccatgtcagttcctttagaatgcgtgaacgtatgtggccgaaaaaatttggtgataattttgcaatgagtcgagaacagaagagggtgaagcaggagaaaggatcgaatgacgccgagaaggtggtggttgcggttaaggcgtccaaggaaattcccaaggctgctctggtgtgggcattgactcatgtcgttcaacatggagattgcattacactgcttgtagttgtcccatctcaaagttcaggtattttcactatgctgttgatttatgcctattttcacgttcagtga

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

9.69

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021323)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0372811 RchiOBHm_Chr5g0049301
rosa_multiflora Rmu_co8291649.1_g000001 Rmu_sc0012876.1_g000004
rosa_samantha Rh2AG428300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 2 cut(s) 328, 467
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 4 cut(s) 26, 60, 80, 371
AcsI RAATTY 2 cut(s) 380, 486
AcyI GRCGYC 2 cut(s) 447, 476
AfiI CCNNNNNNNGG 2 cut(s) 24, 62
AgsI TTSAA 3 cut(s) 134, 294, 530
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 5 cut(s) 52, 144, 149, 224, 286
AluI AGCT 5 cut(s) 52, 144, 149, 224, 286
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 1 cut(s) 445
AoxI GGCC 4 cut(s) 26, 60, 80, 371
ApeKI GCWGC 3 cut(s) 100, 249, 497
ApoI RAATTY 2 cut(s) 380, 486
AspLEI GCGC 4 cut(s) 190, 199, 249, 261
AsuC2I CCSGG 2 cut(s) 8, 263
AsuHPI GGTGA 2 cut(s) 398, 433
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 574
BceAI ACGGC 3 cut(s) 142, 148, 154
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 8, 263
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 3 cut(s) 101, 250, 498
BlpI GCTNAGC 2 cut(s) 145, 282
BlsI GCNGC 3 cut(s) 102, 251, 499
Bme1390I CCNGG 3 cut(s) 8, 118, 263
BmrFI CCNGG 3 cut(s) 8, 118, 263
BoxI GACNNNNGTC 1 cut(s) 521
BplI GAGNNNNNCTC 2 cut(s) 133, 165
Bpu1102I GCTNAGC 2 cut(s) 145, 282
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 8, 263
BsaHI GRCGYC 2 cut(s) 447, 476
BsaJI CCNNGG 2 cut(s) 480, 492
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 62
Bse118I RCCGGY 3 cut(s) 62, 82, 103
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 480, 492
BseLI CCNNNNNNNGG 2 cut(s) 24, 62
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 159, 296
BseX3I CGGCCG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 87, 236, 484
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 28, 62, 82, 373
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 146
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 24, 62
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 4 cut(s) 28, 62, 82, 373
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 437
Bsp1720I GCTNAGC 2 cut(s) 145, 282
BspACI CCGC 2 cut(s) 328, 467
BspANI GGCC 4 cut(s) 28, 62, 82, 373
BspCNI CTCAG 2 cut(s) 158, 295
BspFNI CGCG 1 cut(s) 188
BspPI GGATC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 3 cut(s) 62, 82, 103
BssAI RCCGGY 3 cut(s) 62, 82, 103
BssECI CCNNGG 2 cut(s) 480, 492
BssMI GATC 1 cut(s) 437
BssNI GRCGYC 2 cut(s) 447, 476
BssT1I CCWWGG 2 cut(s) 480, 492
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 313, 410
BstACI GRCGYC 2 cut(s) 447, 476
BstDEI CTNAG 2 cut(s) 145, 282
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 4 cut(s) 190, 199, 249, 261
BstKTI GATC 1 cut(s) 440
BstMBI GATC 1 cut(s) 437
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 4 cut(s) 194, 196, 258, 473
BstNI CCWGG 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 6, 116, 261
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 87, 236, 484
BstZI CGGCCG 1 cut(s) 80
BsuRI GGCC 4 cut(s) 28, 62, 82, 373
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 1 cut(s) 548
CfoI GCGC 4 cut(s) 190, 199, 249, 261
Cfr10I RCCGGY 3 cut(s) 62, 82, 103
CseI GACGC 2 cut(s) 455, 465
CviAII CATG 3 cut(s) 338, 521, 533
DdeI CTNAG 2 cut(s) 145, 282
DpnI GATC 1 cut(s) 439
DpnII GATC 1 cut(s) 437
EaeI YGGCCR 4 cut(s) 26, 60, 80, 371
EagI CGGCCG 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 313, 410
EarI CTCTTC 2 cut(s) 313, 410
Ecl136II GAGCTC 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 480, 492
Eco24I GRGCYC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 480, 492
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 2 cut(s) 480, 492
FaeI CATG 3 cut(s) 341, 524, 536
FaiI YATR 6 cut(s) 339, 368, 522, 534, 593, 606
FaqI GGGAC 1 cut(s) 548
FatI CATG 3 cut(s) 337, 520, 532
Fnu4HI GCNGC 3 cut(s) 101, 250, 498
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 101, 250, 498
GlaI GCGC 4 cut(s) 189, 198, 248, 260
GluI GCNGC 3 cut(s) 101, 250, 498
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 4 cut(s) 28, 62, 82, 373
HgaI GACGC 2 cut(s) 455, 465
HhaI GCGC 4 cut(s) 190, 199, 249, 261
Hin1I GRCGYC 2 cut(s) 447, 476
Hin1II CATG 3 cut(s) 341, 524, 536
Hin6I GCGC 4 cut(s) 188, 197, 247, 259
HinP1I GCGC 4 cut(s) 188, 197, 247, 259
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 5 cut(s) 113, 121, 290, 403, 517
HphI GGTGA 2 cut(s) 398, 433
Hpy166II GTNNAC 1 cut(s) 362
Hpy188III TCNNGA 3 cut(s) 89, 110, 407
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 3 cut(s) 163, 169, 274
HpyAV CCTTC 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 364, 618
HpyCH4V TGCA 3 cut(s) 213, 398, 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 196, 258, 473
HpyF3I CTNAG 2 cut(s) 145, 282
HpySE526I ACGT 2 cut(s) 364, 618
Hsp92I GRCGYC 2 cut(s) 447, 476
Hsp92II CATG 3 cut(s) 341, 524, 536
HspAI GCGC 4 cut(s) 188, 197, 247, 259
Kzo9I GATC 1 cut(s) 437
Lsp1109I GCAGC 3 cut(s) 87, 236, 484
MaeII ACGT 2 cut(s) 364, 618
MalI GATC 1 cut(s) 439
MboI GATC 1 cut(s) 437
MboII GAAGA 4 cut(s) 122, 300, 325, 427
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 380, 391, 486
MlyI GAGTC 3 cut(s) 107, 412, 511
MnlI CCTC 2 cut(s) 85, 411
MseI TTAA 2 cut(s) 276, 471
MspR9I CCNGG 3 cut(s) 8, 118, 263
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 194, 196, 258, 473
NciI CCSGG 2 cut(s) 8, 263
NdeII GATC 1 cut(s) 437
NlaIII CATG 3 cut(s) 341, 524, 536
NmeAIII GCCGAG 1 cut(s) 475
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 167
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 121, 290
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 3 cut(s) 102, 251, 499
PleI GAGTC 3 cut(s) 107, 411, 511
PpsI GAGTC 3 cut(s) 107, 411, 511
PshAI GACNNNNGTC 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 276, 471
SatI GCNGC 3 cut(s) 101, 250, 498
Sau3AI GATC 1 cut(s) 437
SchI GAGTC 3 cut(s) 107, 412, 511
ScrFI CCNGG 3 cut(s) 8, 118, 263
SduI GDGCHC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 380, 391, 486
SsiI CCGC 2 cut(s) 328, 467
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 6, 116, 261
StyI CCWWGG 2 cut(s) 480, 492
TaiI ACGT 2 cut(s) 367, 621
TaqI TCGA 4 cut(s) 124, 288, 406, 440
TasI AATT 3 cut(s) 380, 391, 486
TfiI GAWTC 2 cut(s) 121, 290
Tru1I TTAA 2 cut(s) 276, 471
Tru9I TTAA 2 cut(s) 276, 471
TscAI CASTG 1 cut(s) 555
TseI GCWGC 3 cut(s) 100, 249, 497
TspRI CASTG 1 cut(s) 555
XapI RAATTY 2 cut(s) 380, 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.