Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021323

Physical Location & Seq

Genomic Coordinates Forward (+)

63624433 .. 63625482

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG428300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTCGAGAACAGAAGAGGATGAAGCAGGAGAAGGGATCGGATGACGCCGAGAAGGTGGTGGTTGCGGTTAAGGCGTCCAAGGAGATTCCCAAGACTGCTCTGGTGTGGGCATTGACTCATGTCGTTCAACCTGGAGATTGCATTACACTGCTTGTAGTTGTCCCGTCTCAAAGTTCAGGTAGAAAATTATGGGGCTTCCCAAGATTCGCAGGGGACTGTGCAAGTGGTAACAAGAAGTCTCAGTCAGGAACAACCTCAGAGCTGAAAGGTGATATCTCAGATTCCTGCTCTCAGATGATCCTTCAGCTTCATGAAGTTTATGATCCAAATAAGATAAACGTGAAGATAAAGATTATAACTGGATCACCTTCTGGGTCTGTGGCTGTGGAGGCCAAGAGAGCTCAAGCTAGTTGGGTTGTGTTAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

9.32

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021323)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372811 RchiOBHm_Chr5g0049301
rosa_multiflora	Rmu_co8291649.1_g000001 Rmu_sc0012876.1_g000004
rosa_samantha	Rh2AG428300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	4 cut(s)	46, 295, 320, 373
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	2 cut(s)	48, 77
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	265, 310, 404, 410
AluI	AGCT	4 cut(s)	265, 310, 404, 410
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	174, 246
AlwI	GGATC	4 cut(s)	46, 295, 320, 373
AoxI	GGCC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	284, 360
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	174, 246
BfaI	CTAG	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	390
BsaHI	GRCGYC	2 cut(s)	48, 77
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	27, 49
BseMII	CTCAG	4 cut(s)	257, 273, 294, 308
BseNI	ACTGG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	149, 230
BsmAI	GTCTC	2 cut(s)	174, 246
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	149, 230
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	38, 300, 325, 365
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	4 cut(s)	256, 272, 293, 307
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	4 cut(s)	46, 295, 320, 373
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	38, 300, 325, 365
BssNI	GRCGYC	2 cut(s)	48, 77
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	48, 77
BstDEI	CTNAG	4 cut(s)	243, 259, 280, 294
BstF5I	GGATG	2 cut(s)	27, 49
BstKTI	GATC	4 cut(s)	41, 303, 328, 368
BstMAI	GTCTC	2 cut(s)	174, 246
BstMBI	GATC	4 cut(s)	38, 300, 325, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 392, 401
BstNI	CCWGG	1 cut(s)	135
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	27, 49
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	313
CseI	GACGC	2 cut(s)	56, 66
CviAII	CATG	2 cut(s)	122, 314
CviJI	RGCY	7 cut(s)	198, 265, 310, 386, 395, 404, 410
CviKI_1	RGCY	7 cut(s)	198, 265, 310, 386, 395, 404, 410
DdeI	CTNAG	4 cut(s)	243, 259, 280, 294
DpnI	GATC	4 cut(s)	40, 302, 327, 367
DpnII	GATC	4 cut(s)	38, 300, 325, 365
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	125, 317
FaiI	YATR	5 cut(s)	123, 193, 315, 324, 359
FaqI	GGGAC	2 cut(s)	149, 230
FatI	CATG	2 cut(s)	121, 313
FokI	GGATG	2 cut(s)	34, 56
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	395
HgaI	GACGC	2 cut(s)	56, 66
Hin1I	GRCGYC	2 cut(s)	48, 77
Hin1II	CATG	2 cut(s)	125, 317
HinfI	GANTC	5 cut(s)	4, 88, 118, 207, 284
HphI	GGTGA	2 cut(s)	284, 360
Hpy188I	TCNGA	4 cut(s)	43, 262, 283, 297
Hpy188III	TCNNGA	3 cut(s)	8, 249, 314
HpyAV	CCTTC	4 cut(s)	28, 49, 314, 381
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	144, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 392, 401
HpyF3I	CTNAG	4 cut(s)	243, 259, 280, 294
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	2 cut(s)	48, 77
Hsp92II	CATG	2 cut(s)	125, 317
Kzo9I	GATC	4 cut(s)	38, 300, 325, 365
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	40, 302, 327, 367
MboI	GATC	4 cut(s)	38, 300, 325, 365
MboII	GAAGA	2 cut(s)	28, 358
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	13, 112
MnlI	CCTC	3 cut(s)	12, 268, 385
MseI	TTAA	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	74, 392, 401
NdeII	GATC	4 cut(s)	38, 300, 325, 365
NlaIII	CATG	2 cut(s)	125, 317
NmeAIII	GCCGAG	1 cut(s)	76
PagI	TCATGA	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	88, 207, 284
PleI	GAGTC	2 cut(s)	12, 112
PpsI	GAGTC	2 cut(s)	12, 112
PshAI	GACNNNNGTC	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	38, 300, 325, 365
SchI	GAGTC	2 cut(s)	13, 112
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	88, 207, 284
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	3 cut(s)	38, 302, 330
TspRI	CASTG	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.