Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013102.1

Orthogroup ID

OG0025644

Physical Location & Seq

Genomic Coordinates Forward (+)

56289 .. 56627

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013102.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgaccaaaatgctcgagtttcatctcaatttacgaacattgccactgaccattcaatgcccaaacctccacgcgctcgggatcgtctaccgcaagttcaaacctaagaacgtcctcctccgcgaggatgatcacatcatgctctccaacttcaacctccgcaagtcgccaggaattactagaggcctcgaggctttcttgaaaatttcaactgcgttcttgacgctgttctctttcgaggcgtcgatttcctactccgtcggggtttcgacgcacagagacttggatttcggcgacaaaaacccttgcgagatcagatcttggaaaacggcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009914 GO:0009926 GO:0009987 GO:0010154 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

112

Amino Acids

12.86

Weight (kDa)

9.3

Isoelectric Point (pI)

22.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025644)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0013102.1_g000015 Rmu_sc0015727.1_g000001
rosa_samantha	Rh1CG205200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	74, 123
AciI	CCGC	4 cut(s)	91, 121, 160, 332
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	56, 100, 154, 202, 210
AjnI	CCWGG	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	3 cut(s)	14, 77, 188
AoxI	GGCC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	1 cut(s)	76
AvaI	CYCGRG	3 cut(s)	14, 77, 188
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	171
BmeT110I	CYCGRG	3 cut(s)	14, 77, 188
BmrFI	CCNGG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	74, 123
BshFI	GGCC	1 cut(s)	186
BsiHKCI	CYCGRG	3 cut(s)	14, 77, 188
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	186
BsoBI	CYCGRG	3 cut(s)	14, 77, 188
Bsp143I	GATC	4 cut(s)	81, 130, 312, 317
BspACI	CCGC	4 cut(s)	91, 121, 160, 332
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	74, 123
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	38
BssMI	GATC	4 cut(s)	81, 130, 312, 317
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	2 cut(s)	74, 123
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	4 cut(s)	84, 133, 315, 320
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	81, 130, 312, 317
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	2 cut(s)	74, 123
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	3 cut(s)	231, 232, 280
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	2 cut(s)	186, 194
CviKI_1	RGCY	2 cut(s)	186, 194
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	4 cut(s)	83, 132, 314, 319
DpnII	GATC	4 cut(s)	81, 130, 312, 317
Eco147I	AGGCCT	1 cut(s)	186
Eco88I	CYCGRG	3 cut(s)	14, 77, 188
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	142
FaiI	YATR	1 cut(s)	140
FatI	CATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	3 cut(s)	231, 232, 280
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	79, 199, 220
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	3 cut(s)	247, 263, 274
HpyCH4IV	ACGT	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	81, 130, 312, 317
LpnPI	CCDG	2 cut(s)	156, 183
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	111
MalI	GATC	4 cut(s)	83, 132, 314, 319
MboI	GATC	4 cut(s)	81, 130, 312, 317
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	3 cut(s)	28, 174, 204
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	77, 118, 125, 128, 167, 176, 184, 197, 232
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	2 cut(s)	74, 123
NdeII	GATC	4 cut(s)	81, 130, 312, 317
NlaIII	CATG	1 cut(s)	142
PaeR7I	CTCGAG	2 cut(s)	14, 188
PceI	AGGCCT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspXI	VCTCGAGB	2 cut(s)	14, 188
PsuI	RGATCY	1 cut(s)	317
Sau3AI	GATC	4 cut(s)	81, 130, 312, 317
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	4 cut(s)	69, 106, 114, 159
Sfr274I	CTCGAG	2 cut(s)	14, 188
SlaI	CTCGAG	2 cut(s)	14, 188
SmlI	CTYRAG	2 cut(s)	14, 188
SmoI	CTYRAG	2 cut(s)	14, 188
Sse9I	AATT	3 cut(s)	28, 174, 204
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	4 cut(s)	91, 121, 160, 332
SspMI	CTAG	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	169
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	5 cut(s)	15, 189, 237, 245, 269
TasI	AATT	3 cut(s)	28, 174, 204
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	204
XhoI	CTCGAG	2 cut(s)	14, 188
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.