Rh1CG205200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
44582384 .. 44585374
2991 bp
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UTR
Exon/CDS
Intron
Rh1CG205200.1

Sequence Viewer

Length: 207 bp
ATGCTCTCCGACTTCGACCTCTGCTTCAAATCTGACGTCGTTCCGACCTTCGAGCGCCTCCCGGTCGAAAATCAAGGGGATTCGCCAACTGCTTCGGATCGGGATATTTCTATTTCAGCGTCAGAGGAGGCTTCAGACCTCTCAAGCAGCAGACCCATATTCTCAAACAGATACAGCAAGAAGAAATCTAATAACCAAATAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.53

Weight (kDa)

4.65

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025644)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0013102.1_g000015 Rmu_sc0015727.1_g000001
rosa_samantha Rh1CG205200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AclWI GGATC 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AspLEI GCGC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 62
BbvI GCAGC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 62
Bsp143I GATC 1 cut(s) 97
BspPI GGATC 1 cut(s) 105
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 57
CseI GACGC 1 cut(s) 108
CviJI RGCY 2 cut(s) 131, 203
CviKI_1 RGCY 2 cut(s) 131, 203
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 117
FaiI YATR 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 58
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 62
Hpy188I TCNGA 6 cut(s) 10, 34, 45, 97, 124, 136
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 159
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 33, 68
MnlI CCTC 5 cut(s) 29, 68, 118, 121, 149
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 149
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 62
SetI ASST 5 cut(s) 21, 39, 50, 141, 205
SgeI CNNG 7 cut(s) 64, 73, 74, 86, 113, 156, 190
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 15, 51, 66
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 1 cut(s) 147
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.