Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015727.1

Orthogroup ID

OG0025644

Physical Location & Seq

Genomic Coordinates Forward (+)

376 .. 732

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaccaaaatgcttgagtttcatcacaatttacgtgcattgccactgaccaatatccaatacccaagcctccacgctctcgagatcgtctactgcgacctcagacctgagaaagtcctcctcctcgaggacgaccacatcatgctctacgatttcgacctctgcttcaaatctgacgtcgttccgaccttcgagcgcctcccggtggaaaatcaaggggatccgccaactgcttcggatcgggatatttctattttaggtgttgattcattcagatctataagtggaggagccatcattaagcagagagagagagagaggttagatttcaatcgctctctctctctgtgtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009914 GO:0009926 GO:0009987 GO:0010154 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

118

Amino Acids

13.64

Weight (kDa)

5.08

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025644)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0013102.1_g000015 Rmu_sc0015727.1_g000001
rosa_samantha	Rh1CG205200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AbsI	CCTCGAGG	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	215, 228, 246
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	127, 205
AgsI	TTSAA	2 cut(s)	169, 331
AlwI	GGATC	3 cut(s)	215, 228, 246
Ama87I	CYCGRG	2 cut(s)	80, 125
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	203
AvaI	CYCGRG	2 cut(s)	80, 125
BamHI	GGATCC	1 cut(s)	220
BccI	CCATC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	199
BglII	AGATCT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	2 cut(s)	80, 125
BmiI	GGNNCC	2 cut(s)	222, 292
BmrFI	CCNGG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 205
Bse3DI	GCAATG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	127, 205
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	99, 115
BseRI	GAGGAG	3 cut(s)	110, 113, 303
BsiHKCI	CYCGRG	2 cut(s)	80, 125
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	127, 205
BsoBI	CYCGRG	2 cut(s)	80, 125
Bsp143I	GATC	4 cut(s)	84, 220, 238, 275
BspACI	CCGC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	100, 114
BspLI	GGNNCC	2 cut(s)	222, 292
BspPI	GGATC	3 cut(s)	215, 228, 246
BsrDI	GCAATG	1 cut(s)	38
BssMI	GATC	4 cut(s)	84, 220, 238, 275
BssNI	GRCGYC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	101, 108
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	87, 223, 241, 278
BstMBI	GATC	4 cut(s)	84, 220, 238, 275
BstSCI	CCNGG	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	220, 275
BstYI	RGATCY	2 cut(s)	220, 275
BtsIMutI	CAGTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	198
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	2 cut(s)	69, 293
CviKI_1	RGCY	2 cut(s)	69, 293
DdeI	CTNAG	2 cut(s)	101, 108
DpnI	GATC	4 cut(s)	86, 222, 240, 277
DpnII	GATC	4 cut(s)	84, 220, 238, 275
EciI	GGCGGA	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	80, 125
EcoNI	CCTNNNNNAGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	145
FaiI	YATR	3 cut(s)	143, 281, 353
FatI	CATG	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	90
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	5 cut(s)	104, 175, 186, 238, 275
Hpy188III	TCNNGA	3 cut(s)	80, 82, 242
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	34, 177
HpyCH4V	TGCA	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	101, 108
HpySE526I	ACGT	2 cut(s)	34, 177
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	84, 220, 238, 275
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	2 cut(s)	120, 216
MaeII	ACGT	2 cut(s)	34, 177
MalI	GATC	4 cut(s)	86, 222, 240, 277
MboI	GATC	4 cut(s)	84, 220, 238, 275
MflI	RGATCY	2 cut(s)	220, 275
MluCI	AATT	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	209
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	84, 220, 238, 275
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	222, 292
PaeR7I	CTCGAG	2 cut(s)	80, 125
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	222, 292
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	220, 275
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	4 cut(s)	84, 220, 238, 275
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	8 cut(s)	37, 102, 109, 162, 180, 191, 262, 323
Sfr274I	CTCGAG	2 cut(s)	80, 125
SlaI	CTCGAG	2 cut(s)	80, 125
SmlI	CTYRAG	3 cut(s)	14, 80, 125
SmoI	CTYRAG	3 cut(s)	14, 80, 125
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	2 cut(s)	37, 180
TaqI	TCGA	4 cut(s)	81, 126, 156, 192
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	11, 258
TspRI	CASTG	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	125
XhoI	CTCGAG	2 cut(s)	80, 125
XmiI	GTMKAC	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.