Rmu_sc0013924.1_g000002

Hus1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013924.1
OG0021662
Physical Location & Seq
Reverse (-)
5530 .. 5931
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013924.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atgggaaagatatgccatctcttcctcaacagagaccgtgttttcttcctccacaaccttctcaatggcaatggaattcaatccgttgctcagtttagcaaagaagctcttttagatgactatcgcatcactagccggtatgacgactgcattgcctttacactagacatttctcttctgcaccgtgctcttcgtagcagtgtcagcatatgtactgagtttggaaatgggccaatagccaattgcctacaaattaaattagcaaagaagcttactaaacacaaagatcgtgttttccttacccttgagaccaagggtcaaaatcatagtaatccaagacataccaatctcatcacctttgtagatcggatgaggcatgttggtaatctcttacggagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Hus1

Protein Analysis

133

Amino Acids

15.24

Weight (kDa)

9.74

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021662)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003475.1_g000005 Rmu_sc0013924.1_g000002 Rmu_sc0014163.1_g000006
rosa_roxburghii Rroxscaffold_2G00101290
rosa_samantha Rh6CG239500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 80
AhdI GACNNNNNGTC 1 cut(s) 315
AluBI AGCT 3 cut(s) 107, 271, 399
AluI AGCT 3 cut(s) 107, 271, 399
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 27, 302
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 2 cut(s) 27, 302
BfaI CTAG 2 cut(s) 132, 164
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 27, 302
BsaJI CCNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 76, 150
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 120
BseMI GCAATG 2 cut(s) 76, 150
BseMII CTCAG 2 cut(s) 104, 207
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 27, 302
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 2 cut(s) 27, 302
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 286, 364
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 103, 208
BspQI GCTCTTC 1 cut(s) 195
BspTNI GGTCTC 2 cut(s) 27, 302
BsrDI GCAATG 2 cut(s) 76, 150
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 286, 364
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 38, 185
Bst6I CTCTTC 3 cut(s) 26, 180, 195
BstDEI CTNAG 2 cut(s) 90, 216
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 2 cut(s) 289, 367
BstMAI GTCTC 2 cut(s) 27, 302
BstMBI GATC 2 cut(s) 286, 364
BstMWI GCNNNNNNNGC 2 cut(s) 132, 204
BstNSI RCATGY 1 cut(s) 380
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 377
CviJI RGCY 6 cut(s) 107, 135, 232, 239, 271, 399
CviKI_1 RGCY 6 cut(s) 107, 135, 232, 239, 271, 399
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 90, 216
DpnI GATC 2 cut(s) 288, 366
DpnII GATC 2 cut(s) 286, 364
DriI GACNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 3 cut(s) 26, 180, 195
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 3 cut(s) 26, 180, 195
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 27, 302
EcoRI GAATTC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 380
FaiI YATR 7 cut(s) 13, 141, 209, 211, 327, 342, 378
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 1 cut(s) 376
FauNDI CATATG 1 cut(s) 209
FokI GGATG 1 cut(s) 382
FspBI CTAG 2 cut(s) 132, 164
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 136
Hin1II CATG 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 269
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 38, 185
HpyCH4V TGCA 2 cut(s) 150, 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 204
HpyF3I CTNAG 2 cut(s) 90, 216
Hsp92II CATG 1 cut(s) 380
Kzo9I GATC 2 cut(s) 286, 364
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 1 cut(s) 149
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 132, 164
MalI GATC 2 cut(s) 288, 366
MboI GATC 2 cut(s) 286, 364
MboII GAAGA 4 cut(s) 13, 37, 167, 182
MfeI CAATTG 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 4 cut(s) 75, 241, 252, 257
MnlI CCTC 3 cut(s) 35, 59, 366
MseI TTAA 1 cut(s) 255
MspI CCGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 132, 204
NdeI CATATG 1 cut(s) 209
NdeII GATC 2 cut(s) 286, 364
NlaIII CATG 1 cut(s) 380
NspI RCATGY 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 2 cut(s) 286, 364
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 190
SetI ASST 5 cut(s) 60, 109, 273, 359, 401
SfaNI GCATC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 4 cut(s) 75, 241, 252, 257
SspMI CTAG 2 cut(s) 132, 164
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 38, 185
TasI AATT 4 cut(s) 75, 241, 252, 257
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 380
XspI CTAG 2 cut(s) 132, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.