Rh6CG239500

Hus1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0021662
Physical Location & Seq
Forward (+)
40495645 .. 40496085
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG239500.1

Sequence Viewer

Length: 441 bp
ATGGGAAAGATATGCCATCTCTTCCTCAACAGAGACCGTGTTTTCTTCCTCCACAACCTTCTCAATGGCAATGGAATTCAATCCGTTGCTCAGTTTAGCAAAGAAGCTCTTTTAGATGATTATCGCATCACTAGCCGGTATGACGACTGCATTGCCTTTACACTAGACATTTCTCTTCTGCACCGTGCTCTTCGTAGCAGTGTCAGCATATGTAATGAGTTTGGAAATGGGCCAATAGCCAATTGCCTACAGATTAAATTAGCAAAGAAGCTTACTAAACACAAAGATCGTGTTTTCCTTACCTTTGAGACCAAGGGTCAAAATCACAGTAATCCAAGACATACCAATCTCATCACCTTTGTGGATCAGATGAGGCATGTTGGTGATCTCTTACGGAGCTATATGCAATACTTATCAGTATGCAGTGGAGACTTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Hus1

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

9.08

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hus1 PF04005 1 - 110 6.9e-20 Hus1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021662)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003475.1_g000005 Rmu_sc0013924.1_g000002 Rmu_sc0014163.1_g000006
rosa_roxburghii Rroxscaffold_2G00101290
rosa_samantha Rh6CG239500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 75
AgsI TTSAA 1 cut(s) 80
AhdI GACNNNNNGTC 1 cut(s) 315
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 3 cut(s) 107, 271, 399
AluI AGCT 3 cut(s) 107, 271, 399
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 3 cut(s) 27, 302, 423
AlwI GGATC 1 cut(s) 372
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 346, 395
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 3 cut(s) 27, 302, 423
BfaI CTAG 2 cut(s) 132, 164
BfmI CTRYAG 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 27, 302
BsaJI CCNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 76, 150
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 120
BseMI GCAATG 2 cut(s) 76, 150
BseMII CTCAG 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 136
BsmAI GTCTC 3 cut(s) 27, 302, 423
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 2 cut(s) 27, 302
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 286, 364, 385
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 195
BspTNI GGTCTC 2 cut(s) 27, 302
BsrDI GCAATG 2 cut(s) 76, 150
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 286, 364, 385
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 38, 185, 329
Bst6I CTCTTC 3 cut(s) 26, 180, 195
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 3 cut(s) 289, 367, 388
BstMAI GTCTC 3 cut(s) 27, 302, 423
BstMBI GATC 3 cut(s) 286, 364, 385
BstMWI GCNNNNNNNGC 2 cut(s) 132, 204
BstNSI RCATGY 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 232
BtsI GCAGTG 2 cut(s) 205, 430
BtsIMutI CAGTG 2 cut(s) 205, 430
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 1 cut(s) 377
CviJI RGCY 6 cut(s) 107, 135, 232, 239, 271, 399
CviKI_1 RGCY 6 cut(s) 107, 135, 232, 239, 271, 399
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 288, 366, 387
DpnII GATC 3 cut(s) 286, 364, 385
DriI GACNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 3 cut(s) 26, 180, 195
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 3 cut(s) 26, 180, 195
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 27, 302
EcoRI GAATTC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 380
FaiI YATR 9 cut(s) 13, 141, 209, 211, 342, 378, 402, 404, 421
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 1 cut(s) 376
FauNDI CATATG 1 cut(s) 209
FspBI CTAG 2 cut(s) 132, 164
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 136
Hin1II CATG 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 269
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 346, 395
Hpy188I TCNGA 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 3 cut(s) 38, 185, 329
HpyCH4V TGCA 4 cut(s) 150, 181, 406, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 204
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 380
Kzo9I GATC 3 cut(s) 286, 364, 385
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 1 cut(s) 149
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 132, 164
MalI GATC 3 cut(s) 288, 366, 387
MboI GATC 3 cut(s) 286, 364, 385
MboII GAAGA 4 cut(s) 13, 37, 167, 182
MfeI CAATTG 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 75, 241, 257
MnlI CCTC 3 cut(s) 35, 59, 366
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 359, 381
MspI CCGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 132, 204
NdeI CATATG 1 cut(s) 209
NdeII GATC 3 cut(s) 286, 364, 385
NlaIII CATG 1 cut(s) 380
NspI RCATGY 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 230
RseI CAYNNNNRTG 2 cut(s) 359, 381
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 3 cut(s) 286, 364, 385
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 190
SetI ASST 6 cut(s) 60, 109, 273, 305, 359, 401
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 248
SgeI CNNG 9 cut(s) 50, 144, 148, 176, 197, 302, 325, 348, 389
SmiMI CAYNNNNRTG 2 cut(s) 359, 381
Sse9I AATT 3 cut(s) 75, 241, 257
SspMI CTAG 2 cut(s) 132, 164
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 38, 185, 329
TasI AATT 3 cut(s) 75, 241, 257
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 205, 430
TspGWI ACGGA 2 cut(s) 73, 409
TspRI CASTG 2 cut(s) 205, 430
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 380
XspI CTAG 2 cut(s) 132, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.