Agenet domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0426121 |
| rosa_multiflora | Rmu_sc0014286.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00368110 |
| rosa_samantha | Rh4CG284700 Rh4DG267900 |
| rosa_wichuraiana | Rw4G022960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1422 |
| Acc16I | TGCGCA | 1 cut(s) | 1354 |
| Acc36I | ACCTGC | 1 cut(s) | 1422 |
| AccII | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| AccIII | TCCGGA | 1 cut(s) | 625 |
| AciI | CCGC | 9 cut(s) | 60, 121, 159, 205, 1172, 1213, 1241, 1262, 1338 |
| AclI | AACGTT | 1 cut(s) | 473 |
| AclWI | GGATC | 5 cut(s) | 972, 985, 1100, 1113, 1317 |
| AcoI | YGGCCR | 1 cut(s) | 233 |
| AcsI | RAATTY | 3 cut(s) | 313, 356, 554 |
| AcuI | CTGAAG | 2 cut(s) | 594, 920 |
| AfaI | GTAC | 5 cut(s) | 137, 323, 773, 956, 1010 |
| AfeI | AGCGCT | 1 cut(s) | 857 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 1065 |
| AflIII | ACRYGT | 2 cut(s) | 261, 825 |
| AgeI | ACCGGT | 1 cut(s) | 603 |
| AgsI | TTSAA | 8 cut(s) | 19, 178, 241, 318, 676, 716, 879, 928 |
| AjiI | CACGTC | 1 cut(s) | 256 |
| AjnI | CCWGG | 4 cut(s) | 351, 831, 1113, 1137 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 915, 947 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1031, 1063 |
| AluBI | AGCT | 3 cut(s) | 226, 347, 1026 |
| AluI | AGCT | 3 cut(s) | 226, 347, 1026 |
| Alw21I | GWGCWC | 3 cut(s) | 96, 228, 1149 |
| Alw26I | GTCTC | 3 cut(s) | 2, 491, 1250 |
| AlwI | GGATC | 5 cut(s) | 972, 985, 1100, 1113, 1317 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1187 |
| Ama87I | CYCGRG | 1 cut(s) | 219 |
| Aor13HI | TCCGGA | 1 cut(s) | 625 |
| Aor51HI | AGCGCT | 1 cut(s) | 857 |
| AoxI | GGCC | 8 cut(s) | 70, 117, 150, 206, 233, 684, 890, 1140 |
| ApoI | RAATTY | 3 cut(s) | 313, 356, 554 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 341, 373 |
| AsiGI | ACCGGT | 1 cut(s) | 603 |
| AspLEI | GCGC | 4 cut(s) | 858, 1217, 1355, 1397 |
| AspS9I | GGNCC | 6 cut(s) | 71, 118, 151, 207, 415, 1127 |
| AsuC2I | CCSGG | 2 cut(s) | 220, 221 |
| AsuHPI | GGTGA | 8 cut(s) | 38, 307, 466, 664, 1152, 1190, 1221, 1403 |
| AvaI | CYCGRG | 1 cut(s) | 219 |
| AvaII | GGWCC | 2 cut(s) | 415, 1127 |
| BamHI | GGATCC | 2 cut(s) | 977, 1105 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 1 cut(s) | 600 |
| Bbv12I | GWGCWC | 3 cut(s) | 96, 228, 1149 |
| BccI | CCATC | 4 cut(s) | 332, 398, 960, 1334 |
| BceAI | ACGGC | 4 cut(s) | 73, 165, 172, 220 |
| BciT130I | CCWGG | 4 cut(s) | 353, 833, 1115, 1139 |
| BcnI | CCSGG | 2 cut(s) | 220, 221 |
| BcoDI | GTCTC | 3 cut(s) | 2, 491, 1250 |
| BfaI | CTAG | 3 cut(s) | 128, 447, 780 |
| BfmI | CTRYAG | 4 cut(s) | 1280, 1304, 1378, 1415 |
| BfoI | RGCGCY | 2 cut(s) | 859, 1398 |
| BfuAI | ACCTGC | 1 cut(s) | 1422 |
| BmcAI | AGTACT | 1 cut(s) | 323 |
| Bme1390I | CCNGG | 6 cut(s) | 220, 221, 353, 833, 1115, 1139 |
| Bme18I | GGWCC | 2 cut(s) | 415, 1127 |
| BmeT110I | CYCGRG | 1 cut(s) | 219 |
| BmgBI | CACGTC | 1 cut(s) | 256 |
| BmgT120I | GGNCC | 6 cut(s) | 71, 118, 151, 207, 415, 1127 |
| BmiI | GGNNCC | 6 cut(s) | 64, 73, 416, 417, 979, 1107 |
| BmrFI | CCNGG | 6 cut(s) | 220, 221, 353, 833, 1115, 1139 |
| BmrI | ACTGGG | 2 cut(s) | 1158, 1175 |
| BmsI | GCATC | 4 cut(s) | 132, 754, 881, 937 |
| BmuI | ACTGGG | 2 cut(s) | 1158, 1175 |
| BpiI | GAAGAC | 1 cut(s) | 600 |
| BpmI | CTGGAG | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 1 cut(s) | 880 |
| BpuMI | CCSGG | 2 cut(s) | 220, 221 |
| BsaAI | YACGTR | 2 cut(s) | 826, 1012 |
| BsaI | GGTCTC | 1 cut(s) | 2 |
| BsaJI | CCNNGG | 5 cut(s) | 55, 154, 218, 219, 831 |
| BsaWI | WCCGGW | 2 cut(s) | 603, 625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 47, 77 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 1065 |
| Bse118I | RCCGGY | 4 cut(s) | 68, 231, 603, 998 |
| Bse1I | ACTGG | 5 cut(s) | 101, 133, 1085, 1164, 1181 |
| BseAI | TCCGGA | 1 cut(s) | 625 |
| BseBI | CCWGG | 4 cut(s) | 353, 833, 1115, 1139 |
| BseDI | CCNNGG | 5 cut(s) | 55, 154, 218, 219, 831 |
| BseGI | GGATG | 7 cut(s) | 123, 343, 406, 541, 604, 769, 971 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 1065 |
| BseMII | CTCAG | 1 cut(s) | 555 |
| BseNI | ACTGG | 5 cut(s) | 101, 133, 1085, 1164, 1181 |
| BseRI | GAGGAG | 5 cut(s) | 411, 609, 718, 764, 891 |
| BseX3I | CGGCCG | 1 cut(s) | 233 |
| BseYI | CCCAGC | 3 cut(s) | 82, 852, 1191 |
| Bsh1236I | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| Bsh1285I | CGRYCG | 1 cut(s) | 236 |
| BshFI | GGCC | 8 cut(s) | 72, 119, 152, 208, 235, 686, 892, 1142 |
| BshTI | ACCGGT | 1 cut(s) | 603 |
| BsiEI | CGRYCG | 1 cut(s) | 236 |
| BsiHKAI | GWGCWC | 3 cut(s) | 96, 228, 1149 |
| BsiHKCI | CYCGRG | 1 cut(s) | 219 |
| BsiSI | CCGG | 6 cut(s) | 69, 220, 232, 604, 626, 999 |
| BslFI | GGGAC | 7 cut(s) | 304, 401, 538, 599, 736, 814, 1327 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 1065 |
| BsmAI | GTCTC | 3 cut(s) | 2, 491, 1250 |
| BsmBI | CGTCTC | 1 cut(s) | 1250 |
| BsmFI | GGGAC | 7 cut(s) | 304, 401, 538, 599, 736, 814, 1327 |
| BsmI | GAATGC | 1 cut(s) | 1054 |
| BsnI | GGCC | 8 cut(s) | 72, 119, 152, 208, 235, 686, 892, 1142 |
| Bso31I | GGTCTC | 1 cut(s) | 2 |
| BsoBI | CYCGRG | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 3 cut(s) | 96, 228, 1149 |
| Bsp13I | TCCGGA | 1 cut(s) | 625 |
| Bsp143I | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| BspACI | CCGC | 9 cut(s) | 60, 121, 159, 205, 1172, 1213, 1241, 1262, 1338 |
| BspANI | GGCC | 8 cut(s) | 72, 119, 152, 208, 235, 686, 892, 1142 |
| BspCNI | CTCAG | 1 cut(s) | 556 |
| BspEI | TCCGGA | 1 cut(s) | 625 |
| BspFNI | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| BspLI | GGNNCC | 6 cut(s) | 64, 73, 416, 417, 979, 1107 |
| BspMAI | CTGCAG | 4 cut(s) | 1284, 1308, 1382, 1419 |
| BspMI | ACCTGC | 1 cut(s) | 1422 |
| BspPI | GGATC | 5 cut(s) | 972, 985, 1100, 1113, 1317 |
| BspQI | GCTCTTC | 1 cut(s) | 624 |
| BspTNI | GGTCTC | 1 cut(s) | 2 |
| BsrFI | RCCGGY | 4 cut(s) | 68, 231, 603, 998 |
| BsrI | ACTGG | 5 cut(s) | 101, 133, 1085, 1164, 1181 |
| BssAI | RCCGGY | 4 cut(s) | 68, 231, 603, 998 |
| BssECI | CCNNGG | 5 cut(s) | 55, 154, 218, 219, 831 |
| BssMI | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| Bst2UI | CCWGG | 4 cut(s) | 353, 833, 1115, 1139 |
| Bst4CI | ACNGT | 3 cut(s) | 91, 295, 700 |
| Bst6I | CTCTTC | 3 cut(s) | 429, 624, 627 |
| BstBAI | YACGTR | 2 cut(s) | 826, 1012 |
| BstDEI | CTNAG | 1 cut(s) | 564 |
| BstDSI | CCRYGG | 2 cut(s) | 55, 154 |
| BstEII | GGTNACC | 1 cut(s) | 26 |
| BstF5I | GGATG | 7 cut(s) | 123, 343, 406, 541, 604, 769, 971 |
| BstFNI | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| BstH2I | RGCGCY | 2 cut(s) | 859, 1398 |
| BstHHI | GCGC | 4 cut(s) | 858, 1217, 1355, 1397 |
| BstKTI | GATC | 6 cut(s) | 980, 1108, 1297, 1325, 1409, 1436 |
| BstMAI | GTCTC | 3 cut(s) | 2, 491, 1250 |
| BstMBI | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| BstMCI | CGRYCG | 1 cut(s) | 236 |
| BstNI | CCWGG | 4 cut(s) | 353, 833, 1115, 1139 |
| BstPI | GGTNACC | 1 cut(s) | 26 |
| BstSCI | CCNGG | 6 cut(s) | 218, 219, 351, 831, 1113, 1137 |
| BstSFI | CTRYAG | 4 cut(s) | 1280, 1304, 1378, 1415 |
| BstUI | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| BstV2I | GAAGAC | 1 cut(s) | 600 |
| BstX2I | RGATCY | 2 cut(s) | 977, 1105 |
| BstYI | RGATCY | 2 cut(s) | 977, 1105 |
| BstZI | CGGCCG | 1 cut(s) | 233 |
| BsuRI | GGCC | 8 cut(s) | 72, 119, 152, 208, 235, 686, 892, 1142 |
| BtgI | CCRYGG | 2 cut(s) | 55, 154 |
| BtgZI | GCGATG | 1 cut(s) | 264 |
| BtrI | CACGTC | 1 cut(s) | 256 |
| BtsCI | GGATG | 7 cut(s) | 123, 343, 406, 541, 604, 769, 971 |
| BtsI | GCAGTG | 3 cut(s) | 748, 774, 1147 |
| BtsIMutI | CAGTG | 3 cut(s) | 748, 774, 1147 |
| BveI | ACCTGC | 1 cut(s) | 1422 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1187 |
| CfoI | GCGC | 4 cut(s) | 858, 1217, 1355, 1397 |
| Cfr10I | RCCGGY | 4 cut(s) | 68, 231, 603, 998 |
| Cfr13I | GGNCC | 6 cut(s) | 71, 118, 151, 207, 415, 1127 |
| Cfr9I | CCCGGG | 1 cut(s) | 219 |
| CseI | GACGC | 3 cut(s) | 269, 1232, 1329 |
| Csp6I | GTAC | 5 cut(s) | 136, 322, 772, 955, 1009 |
| CspAI | ACCGGT | 1 cut(s) | 603 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 993, 1028 |
| CviAII | CATG | 4 cut(s) | 211, 1110, 1176, 1366 |
| CviQI | GTAC | 5 cut(s) | 136, 322, 772, 955, 1009 |
| DdeI | CTNAG | 1 cut(s) | 564 |
| DpnI | GATC | 6 cut(s) | 979, 1107, 1296, 1324, 1408, 1435 |
| DpnII | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| DraI | TTTAAA | 1 cut(s) | 478 |
| EaeI | YGGCCR | 1 cut(s) | 233 |
| EagI | CGGCCG | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 3 cut(s) | 429, 624, 627 |
| EarI | CTCTTC | 3 cut(s) | 429, 624, 627 |
| EciI | GGCGGA | 1 cut(s) | 174 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| EclXI | CGGCCG | 1 cut(s) | 233 |
| Eco147I | AGGCCT | 1 cut(s) | 892 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 2 |
| Eco47I | GGWCC | 2 cut(s) | 415, 1127 |
| Eco47III | AGCGCT | 1 cut(s) | 857 |
| Eco52I | CGGCCG | 1 cut(s) | 233 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| Eco57I | CTGAAG | 2 cut(s) | 594, 920 |
| Eco88I | CYCGRG | 1 cut(s) | 219 |
| Eco91I | GGTNACC | 1 cut(s) | 26 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 415 |
| EcoO65I | GGTNACC | 1 cut(s) | 26 |
| EcoRI | GAATTC | 2 cut(s) | 313, 554 |
| EcoRII | CCWGG | 4 cut(s) | 351, 831, 1113, 1137 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| Esp3I | CGTCTC | 1 cut(s) | 1250 |
| FaeI | CATG | 4 cut(s) | 214, 1113, 1179, 1369 |
| FaiI | YATR | 7 cut(s) | 212, 390, 503, 1111, 1125, 1177, 1367 |
| FaqI | GGGAC | 7 cut(s) | 304, 401, 538, 599, 736, 814, 1327 |
| FatI | CATG | 4 cut(s) | 210, 1109, 1175, 1365 |
| FauI | CCCGC | 5 cut(s) | 128, 1179, 1248, 1269, 1345 |
| FokI | GGATG | 7 cut(s) | 110, 350, 413, 548, 611, 776, 978 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| FspBI | CTAG | 3 cut(s) | 128, 447, 780 |
| FspI | TGCGCA | 1 cut(s) | 1354 |
| GlaI | GCGC | 4 cut(s) | 857, 1216, 1354, 1396 |
| GsaI | CCCAGC | 3 cut(s) | 86, 856, 1195 |
| GsuI | CTGGAG | 1 cut(s) | 551 |
| HaeII | RGCGCY | 2 cut(s) | 859, 1398 |
| HaeIII | GGCC | 8 cut(s) | 72, 119, 152, 208, 235, 686, 892, 1142 |
| HapII | CCGG | 6 cut(s) | 69, 220, 232, 604, 626, 999 |
| HgaI | GACGC | 3 cut(s) | 269, 1232, 1329 |
| HhaI | GCGC | 4 cut(s) | 858, 1217, 1355, 1397 |
| Hin1II | CATG | 4 cut(s) | 214, 1113, 1179, 1369 |
| Hin6I | GCGC | 4 cut(s) | 856, 1215, 1353, 1395 |
| HinP1I | GCGC | 4 cut(s) | 856, 1215, 1353, 1395 |
| HincII | GTYRAC | 1 cut(s) | 790 |
| HindII | GTYRAC | 1 cut(s) | 790 |
| HinfI | GANTC | 4 cut(s) | 526, 560, 672, 724 |
| HpaII | CCGG | 6 cut(s) | 69, 220, 232, 604, 626, 999 |
| HphI | GGTGA | 8 cut(s) | 38, 307, 466, 664, 1152, 1190, 1221, 1403 |
| Hpy166II | GTNNAC | 4 cut(s) | 55, 259, 774, 790 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 565, 939, 996 |
| Hpy188III | TCNNGA | 3 cut(s) | 530, 626, 1076 |
| Hpy8I | GTNNAC | 4 cut(s) | 55, 259, 774, 790 |
| HpyAV | CCTTC | 6 cut(s) | 172, 487, 513, 657, 685, 968 |
| HpyCH4III | ACNGT | 3 cut(s) | 91, 295, 700 |
| HpyCH4IV | ACGT | 5 cut(s) | 201, 255, 473, 825, 1011 |
| HpyCH4V | TGCA | 7 cut(s) | 462, 660, 1282, 1306, 1369, 1380, 1417 |
| HpyF3I | CTNAG | 1 cut(s) | 564 |
| HpySE526I | ACGT | 5 cut(s) | 201, 255, 473, 825, 1011 |
| Hsp92II | CATG | 4 cut(s) | 214, 1113, 1179, 1369 |
| HspAI | GCGC | 4 cut(s) | 856, 1215, 1353, 1395 |
| KflI | GGGWCCC | 1 cut(s) | 415 |
| Kpn2I | TCCGGA | 1 cut(s) | 625 |
| Kzo9I | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| LguI | GCTCTTC | 1 cut(s) | 624 |
| LmnI | GCTCC | 6 cut(s) | 68, 99, 223, 231, 506, 1031 |
| LweI | GCATC | 4 cut(s) | 132, 754, 881, 937 |
| MaeI | CTAG | 3 cut(s) | 128, 447, 780 |
| MaeII | ACGT | 5 cut(s) | 201, 255, 473, 825, 1011 |
| MaeIII | GTNAC | 7 cut(s) | 26, 40, 365, 755, 835, 881, 1085 |
| MalI | GATC | 6 cut(s) | 979, 1107, 1296, 1324, 1408, 1435 |
| MboI | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| MboII | GAAGA | 8 cut(s) | 416, 554, 600, 614, 641, 867, 878, 926 |
| MflI | RGATCY | 2 cut(s) | 977, 1105 |
| MhlI | GDGCHC | 3 cut(s) | 96, 228, 1149 |
| MluCI | AATT | 8 cut(s) | 313, 356, 554, 574, 677, 923, 1040, 1060 |
| MluI | ACGCGT | 1 cut(s) | 261 |
| MlyI | GAGTC | 3 cut(s) | 520, 569, 718 |
| MmeI | TCCRAC | 1 cut(s) | 315 |
| MroI | TCCGGA | 1 cut(s) | 625 |
| MseI | TTAA | 3 cut(s) | 477, 573, 680 |
| MspI | CCGG | 6 cut(s) | 69, 220, 232, 604, 626, 999 |
| MspR9I | CCNGG | 6 cut(s) | 220, 221, 353, 833, 1115, 1139 |
| Mva1269I | GAATGC | 1 cut(s) | 1054 |
| MvaI | CCWGG | 4 cut(s) | 353, 833, 1115, 1139 |
| MvnI | CGCG | 4 cut(s) | 263, 1215, 1243, 1340 |
| NciI | CCSGG | 2 cut(s) | 220, 221 |
| NdeII | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| NlaIII | CATG | 4 cut(s) | 214, 1113, 1179, 1369 |
| NlaIV | GGNNCC | 6 cut(s) | 64, 73, 416, 417, 979, 1107 |
| NmeAIII | GCCGAG | 1 cut(s) | 1168 |
| NmuCI | GTSAC | 4 cut(s) | 26, 40, 365, 881 |
| NsbI | TGCGCA | 1 cut(s) | 1354 |
| PaqCI | CACCTGC | 1 cut(s) | 1422 |
| PceI | AGGCCT | 1 cut(s) | 892 |
| PciSI | GCTCTTC | 1 cut(s) | 624 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PctI | GAATGC | 1 cut(s) | 1054 |
| PfeI | GAWTC | 1 cut(s) | 672 |
| PflFI | GACNNNGTC | 1 cut(s) | 32 |
| PinAI | ACCGGT | 1 cut(s) | 603 |
| PleI | GAGTC | 3 cut(s) | 520, 568, 718 |
| PpsI | GAGTC | 3 cut(s) | 520, 568, 718 |
| Ppu21I | YACGTR | 2 cut(s) | 826, 1012 |
| PpuMI | RGGWCCY | 1 cut(s) | 415 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| Psp1406I | AACGTT | 1 cut(s) | 473 |
| Psp5II | RGGWCCY | 1 cut(s) | 415 |
| Psp6I | CCWGG | 4 cut(s) | 351, 831, 1113, 1137 |
| PspEI | GGTNACC | 1 cut(s) | 26 |
| PspFI | CCCAGC | 3 cut(s) | 82, 852, 1191 |
| PspGI | CCWGG | 4 cut(s) | 351, 831, 1113, 1137 |
| PspN4I | GGNNCC | 6 cut(s) | 64, 73, 416, 417, 979, 1107 |
| PspPI | GGNCC | 6 cut(s) | 71, 118, 151, 207, 415, 1127 |
| PspPPI | RGGWCCY | 1 cut(s) | 415 |
| PstI | CTGCAG | 4 cut(s) | 1284, 1308, 1382, 1419 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1187 |
| PsuI | RGATCY | 2 cut(s) | 977, 1105 |
| PsyI | GACNNNGTC | 1 cut(s) | 32 |
| RsaI | GTAC | 5 cut(s) | 137, 323, 773, 956, 1010 |
| RsaNI | GTAC | 5 cut(s) | 136, 322, 772, 955, 1009 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SapI | GCTCTTC | 1 cut(s) | 624 |
| SaqAI | TTAA | 3 cut(s) | 477, 573, 680 |
| Sau3AI | GATC | 6 cut(s) | 977, 1105, 1294, 1322, 1406, 1433 |
| Sau96I | GGNCC | 6 cut(s) | 71, 118, 151, 207, 415, 1127 |
| ScaI | AGTACT | 1 cut(s) | 323 |
| SchI | GAGTC | 3 cut(s) | 520, 569, 718 |
| ScrFI | CCNGG | 6 cut(s) | 220, 221, 353, 833, 1115, 1139 |
| SduI | GDGCHC | 3 cut(s) | 96, 228, 1149 |
| SfaNI | GCATC | 4 cut(s) | 132, 754, 881, 937 |
| SfcI | CTRYAG | 4 cut(s) | 1280, 1304, 1378, 1415 |
| SinI | GGWCC | 2 cut(s) | 415, 1127 |
| SmaI | CCCGGG | 1 cut(s) | 221 |
| SmlI | CTYRAG | 1 cut(s) | 859 |
| SmoI | CTYRAG | 1 cut(s) | 859 |
| Sse9I | AATT | 8 cut(s) | 313, 356, 554, 574, 677, 923, 1040, 1060 |
| SseBI | AGGCCT | 1 cut(s) | 892 |
| SsiI | CCGC | 9 cut(s) | 60, 121, 159, 205, 1172, 1213, 1241, 1262, 1338 |
| SspMI | CTAG | 3 cut(s) | 128, 447, 780 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| StuI | AGGCCT | 1 cut(s) | 892 |
| StyD4I | CCNGG | 6 cut(s) | 218, 219, 351, 831, 1113, 1137 |
| TaaI | ACNGT | 3 cut(s) | 91, 295, 700 |
| TaiI | ACGT | 5 cut(s) | 204, 258, 476, 828, 1014 |
| TaqI | TCGA | 8 cut(s) | 36, 558, 945, 1050, 1293, 1321, 1405, 1432 |
| TasI | AATT | 8 cut(s) | 313, 356, 554, 574, 677, 923, 1040, 1060 |
| TatI | WGTACW | 1 cut(s) | 321 |
| TauI | GCSGC | 2 cut(s) | 63, 208 |
| TfiI | GAWTC | 1 cut(s) | 672 |
| Tru1I | TTAA | 3 cut(s) | 477, 573, 680 |
| Tru9I | TTAA | 3 cut(s) | 477, 573, 680 |
| TscAI | CASTG | 3 cut(s) | 748, 781, 1154 |
| TseFI | GTSAC | 4 cut(s) | 26, 40, 365, 881 |
| Tsp45I | GTSAC | 4 cut(s) | 26, 40, 365, 881 |
| TspDTI | ATGAA | 3 cut(s) | 377, 555, 1061 |
| TspGWI | ACGGA | 2 cut(s) | 40, 86 |
| TspMI | CCCGGG | 1 cut(s) | 219 |
| TspRI | CASTG | 3 cut(s) | 748, 781, 1154 |
| Tth111I | GACNNNGTC | 1 cut(s) | 32 |
| VpaK11BI | GGWCC | 2 cut(s) | 415, 1127 |
| XapI | RAATTY | 3 cut(s) | 313, 356, 554 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1121 |
| XmaI | CCCGGG | 1 cut(s) | 219 |
| XspI | CTAG | 3 cut(s) | 128, 447, 780 |
| ZrmI | AGTACT | 1 cut(s) | 323 |