Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014620.1

Orthogroup ID

OG0018596

Physical Location & Seq

Genomic Coordinates Forward (+)

21262 .. 21792

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014620.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtttctcaaagtagaattgccctggaatgtagtaatcccgcctgcaaacctggttgcaaaaggattgatgcttaaaaaatcaatcagtctgcgattgctcaaaggctttgctgcaaataaggcaaccaaagatcatgggtactttcttgcgatcacaaccgtggaaagcataggagaggggaaagtcaggcgctccggggatgtggtgtatccagttgtgtttagttgcatcacttttaagcttttcaggggggagatcatagagggggttgttcaccatgtgctgagaaatggagttttgatgagctgcggccctgttgaaaacatatttctatataaggacttaatgcctgattaccgatatgtccccggagagaatcccattttcttgaacgaaaagacgggttctaagattgtgaaagatgtattggttcgttgtgttgttcttgggactaagtggcttgaagaagaaagggagtttcggggactggttagcttggagggtgattatctaggaccagtttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

8.94

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390261
rosa_multiflora	Rmu_sc0004432.1_g000008 Rmu_sc0014620.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336380
rosa_rugosa	Rorug03G0328700 Rorug03G0328800
rosa_samantha	Rh4AG031200 Rh4BG025200 Rh4CG034200 Rh4DG026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 312
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	323, 394, 467
AjnI	CCWGG	2 cut(s)	23, 51
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	3 cut(s)	244, 309, 498
AluI	AGCT	3 cut(s)	244, 309, 498
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	113, 309
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	314, 518
AsuC2I	CCSGG	2 cut(s)	199, 372
AsuHPI	GGTGA	2 cut(s)	269, 518
AvaII	GGWCC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	100, 296
BciT130I	CCWGG	2 cut(s)	25, 53
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	199, 372
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	3 cut(s)	114, 310, 313
BlsI	GCNGC	3 cut(s)	115, 311, 314
Bme1390I	CCNGG	4 cut(s)	25, 53, 199, 372
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	314, 518
BmrFI	CCNGG	4 cut(s)	25, 53, 199, 372
BmsI	GCATC	2 cut(s)	60, 240
BpuMI	CCSGG	2 cut(s)	199, 372
BsaJI	CCNNGG	4 cut(s)	23, 162, 198, 370
Bse1I	ACTGG	3 cut(s)	215, 495, 521
BseBI	CCWGG	2 cut(s)	25, 53
BseDI	CCNNGG	4 cut(s)	23, 162, 198, 370
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	215, 495, 521
BseXI	GCAGC	2 cut(s)	100, 296
BshFI	GGCC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	198, 372
BslFI	GGGAC	3 cut(s)	353, 466, 501
BsmFI	GGGAC	3 cut(s)	353, 466, 501
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	133, 153, 258
BspACI	CCGC	2 cut(s)	41, 312
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	215, 495, 521
BssECI	CCNNGG	4 cut(s)	23, 162, 198, 370
BssMI	GATC	3 cut(s)	133, 153, 258
Bst2UI	CCWGG	2 cut(s)	25, 53
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	287, 411, 456
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	136, 156, 261
BstMBI	GATC	3 cut(s)	133, 153, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	2 cut(s)	25, 53
BstSCI	CCNGG	4 cut(s)	23, 51, 197, 370
BstV1I	GCAGC	2 cut(s)	100, 296
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	314, 518
CsiI	ACCWGGT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	137, 281
CviJI	RGCY	6 cut(s)	108, 244, 309, 315, 463, 498
CviKI_1	RGCY	6 cut(s)	108, 244, 309, 315, 463, 498
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	287, 411, 456
DpnI	GATC	3 cut(s)	135, 155, 260
DpnII	GATC	3 cut(s)	133, 153, 258
DraIII	CACNNNGTG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	23, 51
FaeI	CATG	2 cut(s)	140, 284
FaiI	YATR	9 cut(s)	138, 173, 263, 282, 329, 337, 339, 366, 529
FaqI	GGGAC	3 cut(s)	353, 466, 501
FatI	CATG	2 cut(s)	136, 280
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	114, 310, 313
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	114, 310, 313
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	114, 310, 313
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	198, 372
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	140, 284
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	198, 372
HphI	GGTGA	2 cut(s)	269, 518
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	47, 59, 116, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	3 cut(s)	287, 411, 456
Hsp92II	CATG	2 cut(s)	140, 284
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	133, 153, 258
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	100, 296
LweI	GCATC	2 cut(s)	60, 240
MabI	ACCWGGT	1 cut(s)	51
MaeI	CTAG	1 cut(s)	515
MalI	GATC	3 cut(s)	135, 155, 260
MboI	GATC	3 cut(s)	133, 153, 258
MboII	GAAGA	2 cut(s)	479, 482
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	3 cut(s)	172, 259, 496
MseI	TTAA	3 cut(s)	75, 240, 347
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	2 cut(s)	198, 372
MspR9I	CCNGG	4 cut(s)	25, 53, 199, 372
MvaI	CCWGG	2 cut(s)	25, 53
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	2 cut(s)	199, 372
NdeII	GATC	3 cut(s)	133, 153, 258
NlaIII	CATG	2 cut(s)	140, 284
OliI	CACNNNNGTG	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	115, 311, 314
Psp6I	CCWGG	2 cut(s)	23, 51
PspGI	CCWGG	2 cut(s)	23, 51
PspPI	GGNCC	2 cut(s)	314, 518
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	75, 240, 347
SatI	GCNGC	3 cut(s)	114, 310, 313
Sau3AI	GATC	3 cut(s)	133, 153, 258
Sau96I	GGNCC	2 cut(s)	314, 518
ScrFI	CCNGG	4 cut(s)	25, 53, 199, 372
SetI	ASST	4 cut(s)	54, 246, 311, 500
SexAI	ACCWGGT	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	60, 240
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	2 cut(s)	41, 312
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	4 cut(s)	23, 51, 197, 370
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	75, 240, 347
Tru9I	TTAA	3 cut(s)	75, 240, 347
TseI	GCWGC	2 cut(s)	113, 309
TspDTI	ATGAA	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	518
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.