Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0018596

Physical Location & Seq

Genomic Coordinates Forward (+)

37875876 .. 37878854

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0328800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGTGAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGTTGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATTCACCTCCTCTTTTCTCTTGAGGTGAAGAACTTGAGAGCTGATGAACTCATGGAATTTTACAGAGTCAATGAAGCATCCAACTATACCCAAAGTTCCATATCCCCCAAGATAAGAAGATCATGTGCTGGTTGTCATGGAATTGTGATGAGCTCCTACTCTTGTCAAAGTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

129

Amino Acids

13.95

Weight (kDa)

9.07

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390261
rosa_multiflora	Rmu_sc0004432.1_g000008 Rmu_sc0014620.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336380
rosa_rugosa	Rorug03G0328700 Rorug03G0328800
rosa_samantha	Rh4AG031200 Rh4BG025200 Rh4CG034200 Rh4DG026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	266
AfeI	AGCGCT	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	59, 179, 203, 251, 363, 386
AluI	AGCT	6 cut(s)	59, 179, 203, 251, 363, 386
Alw21I	GWGCWC	2 cut(s)	205, 365
Aor51HI	AGCGCT	1 cut(s)	145
ApeKI	GCWGC	6 cut(s)	5, 41, 164, 167, 179, 182
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	4, 206, 247
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	2 cut(s)	205, 365
Bbv12I	GWGCWC	2 cut(s)	205, 365
BbvI	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	6 cut(s)	6, 42, 165, 168, 180, 183
BlsI	GCNGC	6 cut(s)	7, 43, 166, 169, 181, 184
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	1 cut(s)	296
BpuEI	CTTGAG	3 cut(s)	49, 251, 265
BsaJI	CCNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	7, 209, 213
BseXI	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BsgI	GTGCAG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	205, 365
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	205, 365
Bsp143I	GATC	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	38, 52, 70
Bst6I	CTCTTC	3 cut(s)	25, 117, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BtsCI	GGATG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	3 cut(s)	262, 333, 347
CviJI	RGCY	9 cut(s)	5, 59, 77, 164, 179, 203, 251, 363, 386
CviKI_1	RGCY	9 cut(s)	5, 59, 77, 164, 179, 203, 251, 363, 386
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
Eam1104I	CTCTTC	3 cut(s)	25, 117, 153
EarI	CTCTTC	3 cut(s)	25, 117, 153
Ecl136II	GAGCTC	2 cut(s)	203, 363
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	205, 365
Eco47I	GGWCC	1 cut(s)	126
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	2 cut(s)	203, 363
EcoICRI	GAGCTC	2 cut(s)	203, 363
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	205, 365
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	265, 336, 350
FaiI	YATR	5 cut(s)	263, 297, 311, 334, 348
FalI	AAGNNNNNCTT	1 cut(s)	370
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	261, 332, 346
Fnu4HI	GCNGC	6 cut(s)	6, 42, 165, 168, 180, 183
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	2 cut(s)	205, 365
Fsp4HI	GCNGC	6 cut(s)	6, 42, 165, 168, 180, 183
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	6, 42, 165, 168, 180, 183
HaeII	RGCGCY	1 cut(s)	147
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	265, 336, 350
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	1 cut(s)	276
HphI	GGTGA	3 cut(s)	4, 206, 247
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	28, 230
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	3 cut(s)	38, 52, 70
HpyCH4V	TGCA	3 cut(s)	8, 41, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
Hsp92II	CATG	3 cut(s)	265, 336, 350
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	200, 208, 368
LpnPI	CCDG	3 cut(s)	109, 143, 324
Lsp1109I	GCAGC	5 cut(s)	53, 151, 154, 166, 194
LweI	GCATC	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	6 cut(s)	12, 98, 104, 170, 250, 339
MhlI	GDGCHC	2 cut(s)	205, 365
MluCI	AATT	4 cut(s)	88, 210, 266, 351
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	3 cut(s)	105, 230, 315
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	265, 336, 350
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	10, 64
PkrI	GCNGC	6 cut(s)	7, 43, 166, 169, 181, 184
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	126
Psp124BI	GAGCTC	2 cut(s)	205, 365
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	2 cut(s)	10, 184
SacI	GAGCTC	2 cut(s)	205, 365
SatI	GCNGC	6 cut(s)	6, 42, 165, 168, 180, 183
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	205, 365
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	1 cut(s)	126
SmlI	CTYRAG	3 cut(s)	28, 230, 244
SmoI	CTYRAG	3 cut(s)	28, 230, 244
Sse9I	AATT	4 cut(s)	88, 210, 266, 351
SstI	GAGCTC	2 cut(s)	205, 365
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	38, 52, 70
TasI	AATT	4 cut(s)	88, 210, 266, 351
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	6 cut(s)	5, 41, 164, 167, 179, 182
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	3 cut(s)	171, 270, 297
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.