Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018596

Physical Location & Seq

Genomic Coordinates Reverse (-)

4192474 .. 4192935

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTTAAAAAATCAATCAGTCTCCGATTGCTCAAAGGCTTTGCTGCAAATAAAGCAACCAAAGATCATGGGTACTTTCTTGCGATCACAACCGTGGAAAGCATAGGAGAGGGAAAAGTCAGGCGCTCCGGGGATGTGGTGTATCCAGTTGTGTTTAGTTGCATCACTTTTAAGCTTTTCAGGGGGGAGATCATAGAGGGGGTTGTTCACCATGTGCTGAGAAATGGAGTTTTGATGAGCTGCGGCCCCGTTGAAAACATATTTCTATACAAGGACTTAATGCCTGATTACCGATATGTCCCCGGAGAGAATCCCATTTTCTTGAACGAAAAGACGGGCTCTAAGATTGTGAAAGATGTATTGGTTCGTTGTGTTGTTCTTGGGACTAGGTGGCTTGAAGAAGAAAGGGAGTTTCGGGGACTGGTTAGCTTGGAGGGTGATTATCTAGGACCAGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

153

Amino Acids

17.2

Weight (kDa)

8.76

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390261
rosa_multiflora	Rmu_sc0004432.1_g000008 Rmu_sc0014620.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336380
rosa_rugosa	Rorug03G0328700 Rorug03G0328800
rosa_samantha	Rh4AG031200 Rh4BG025200 Rh4CG034200 Rh4DG026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	254, 325, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	175, 240, 429
AluI	AGCT	3 cut(s)	175, 240, 429
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	44, 240
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	245, 449
AsuC2I	CCSGG	2 cut(s)	130, 303
AsuHPI	GGTGA	2 cut(s)	200, 449
AvaII	GGWCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	31, 227
BciVI	GTATCC	1 cut(s)	153
BcnI	CCSGG	2 cut(s)	130, 303
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	387, 446
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	45, 241, 244
BlsI	GCNGC	3 cut(s)	46, 242, 245
Bme1390I	CCNGG	2 cut(s)	130, 303
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	245, 449
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	130, 303
BmsI	GCATC	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	130, 303
BsaJI	CCNNGG	3 cut(s)	93, 129, 301
Bse1I	ACTGG	3 cut(s)	146, 426, 452
BseDI	CCNNGG	3 cut(s)	93, 129, 301
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	146, 426, 452
BseXI	GCAGC	2 cut(s)	31, 227
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	129, 303
BslFI	GGGAC	3 cut(s)	284, 397, 432
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	3 cut(s)	284, 397, 432
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	64, 84, 189
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	146, 426, 452
BssECI	CCNNGG	3 cut(s)	93, 129, 301
BssMI	GATC	3 cut(s)	64, 84, 189
Bst4CI	ACNGT	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	218, 342
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	67, 87, 192
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	64, 84, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	128, 301
BstV1I	GCAGC	2 cut(s)	31, 227
BsuI	GTATCC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	245, 449
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	68, 212
CviJI	RGCY	7 cut(s)	39, 175, 240, 246, 339, 394, 429
CviKI_1	RGCY	7 cut(s)	39, 175, 240, 246, 339, 394, 429
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	2 cut(s)	218, 342
DpnI	GATC	3 cut(s)	66, 86, 191
DpnII	GATC	3 cut(s)	64, 84, 189
DraIII	CACNNNGTG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	341
FaeI	CATG	2 cut(s)	71, 215
FaiI	YATR	8 cut(s)	69, 104, 194, 213, 260, 268, 297, 460
FaqI	GGGAC	3 cut(s)	284, 397, 432
FatI	CATG	2 cut(s)	67, 211
Fnu4HI	GCNGC	3 cut(s)	45, 241, 244
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	45, 241, 244
FspBI	CTAG	2 cut(s)	387, 446
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	45, 241, 244
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	129, 303
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	71, 215
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	129, 303
HphI	GGTGA	2 cut(s)	200, 449
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	47, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	218, 342
Hsp92II	CATG	2 cut(s)	71, 215
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	64, 84, 189
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	106, 142, 159, 166, 297, 316, 407
Lsp1109I	GCAGC	2 cut(s)	31, 227
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	387, 446
MalI	GATC	3 cut(s)	66, 86, 191
MboI	GATC	3 cut(s)	64, 84, 189
MboII	GAAGA	2 cut(s)	410, 413
MhlI	GDGCHC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	103, 190, 427
MseI	TTAA	3 cut(s)	6, 171, 278
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	2 cut(s)	129, 303
MspR9I	CCNGG	2 cut(s)	130, 303
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	130, 303
NdeII	GATC	3 cut(s)	64, 84, 189
NlaIII	CATG	2 cut(s)	71, 215
NlaIV	GGNNCC	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	46, 242, 245
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	245, 449
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	6, 171, 278
SatI	GCNGC	3 cut(s)	45, 241, 244
Sau3AI	GATC	3 cut(s)	64, 84, 189
Sau96I	GGNCC	2 cut(s)	245, 449
ScrFI	CCNGG	2 cut(s)	130, 303
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	4 cut(s)	177, 242, 392, 431
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	92
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	387, 446
StyD4I	CCNGG	2 cut(s)	128, 301
TaaI	ACNGT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	6, 171, 278
Tru9I	TTAA	3 cut(s)	6, 171, 278
TseI	GCWGC	2 cut(s)	44, 240
TspDTI	ATGAA	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	449
XspI	CTAG	2 cut(s)	387, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.