Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017088.1

Orthogroup ID

OG0021619

Physical Location & Seq

Genomic Coordinates Forward (+)

32 .. 504

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017088.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 473 bp

atgacgacgtcgtctgctcagtcccaacaatccactccctcctcctgggctttgctcccttggaggaccaggatctcgttatcgcttctgtcaaagttaacggacgccgctcgccgaccaatcgacaccatcaaccgccgtctcatgagcttcctctacttacgctcctccgccactccctcagctccctacaaaggcgtcaccacctccgacgtcaccgtcgaccaaacccgcaacctctggttccgcttctatgtcccctctacgacgtcgtcttcccccacctctttacccgtcttcgttttcttccacgacggcggcttcagctttctcagccccgactcctacacctacgactccgtctgccgcaaattcgcccgcgaaatcccctccgtcgtagtctccgtcaactaccgcctctccccggagcacggctacccctgccagtacgacgaaggcctcgacgtcctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

9.0

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021619)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003393.1_g000010 Rmu_sc0017088.1_g000001 Rmu_ssc0000259.1_g000018
rosa_samantha	Rh6BG145300 Rh6DG129600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	10, 218
AatII	GACGTC	4 cut(s)	11, 216, 272, 468
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	381
AciI	CCGC	9 cut(s)	108, 136, 171, 232, 247, 318, 367, 379, 415
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	307
AcyI	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	4 cut(s)	45, 194, 424, 431
AjnI	CCWGG	2 cut(s)	44, 68
AluBI	AGCT	3 cut(s)	150, 185, 327
AluI	AGCT	3 cut(s)	150, 185, 327
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	146, 406
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	193, 208
AvaII	GGWCC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	267, 289
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	3 cut(s)	123, 331, 448
BciT130I	CCWGG	2 cut(s)	46, 70
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	146, 406
BisI	GCNGC	3 cut(s)	108, 319, 367
BlsI	GCNGC	3 cut(s)	109, 320, 368
Bme1390I	CCNGG	3 cut(s)	46, 70, 425
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	46, 70, 425
BpiI	GAAGAC	2 cut(s)	267, 289
Bpu10I	CCTNAGC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	425
BsaHI	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
BsaJI	CCNNGG	3 cut(s)	45, 59, 423
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 404, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 194, 424, 431
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	46, 70
BseDI	CCNNGG	3 cut(s)	45, 59, 423
BseLI	CCNNNNNNNGG	4 cut(s)	45, 194, 424, 431
BseMII	CTCAG	3 cut(s)	32, 195, 346
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	31, 157
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	7, 242
BslI	CCNNNNNNNGG	4 cut(s)	45, 194, 424, 431
BsmAI	GTCTC	2 cut(s)	146, 406
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	7, 242
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	9 cut(s)	108, 136, 171, 232, 247, 318, 367, 379, 415
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	31, 194, 345
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	45, 59, 423
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	46, 70
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
BstC8I	GCNNGC	2 cut(s)	112, 379
BstDEI	CTNAG	3 cut(s)	18, 181, 332
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	146, 406
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
BstNI	CCWGG	2 cut(s)	46, 70
BstSCI	CCNGG	3 cut(s)	44, 68, 423
BstUI	CGCG	1 cut(s)	381
BstV2I	GAAGAC	2 cut(s)	267, 289
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	112, 379
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	2 cut(s)	113, 187
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	50, 150, 185, 321, 327, 336, 435, 459
CviKI_1	RGCY	8 cut(s)	50, 150, 185, 321, 327, 336, 435, 459
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	18, 181, 332
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	2 cut(s)	10, 218
DseDI	GACNNNNNNGTC	2 cut(s)	10, 218
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	44, 68
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 255
FaqI	GGGAC	2 cut(s)	7, 242
FatI	CATG	1 cut(s)	144
FauI	CCCGC	2 cut(s)	239, 386
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	108, 319, 367
Fsp4HI	GCNGC	3 cut(s)	108, 319, 367
GluI	GCNGC	3 cut(s)	108, 319, 367
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	2 cut(s)	113, 187
Hin1I	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	3 cut(s)	99, 223, 409
HindII	GTYRAC	3 cut(s)	99, 223, 409
HinfI	GANTC	2 cut(s)	341, 356
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	193, 208
Hpy166II	GTNNAC	3 cut(s)	99, 223, 409
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	3 cut(s)	99, 223, 409
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	4 cut(s)	8, 213, 269, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
HpyF3I	CTNAG	3 cut(s)	18, 181, 332
HpySE526I	ACGT	4 cut(s)	8, 213, 269, 465
Hsp92I	GRCGYC	6 cut(s)	8, 105, 198, 213, 269, 465
Hsp92II	CATG	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	4 cut(s)	60, 170, 190, 427
LpnPI	CCDG	8 cut(s)	31, 55, 58, 82, 226, 438, 454, 458
MaeII	ACGT	4 cut(s)	8, 213, 269, 465
MaeIII	GTNAC	2 cut(s)	199, 214
MalI	GATC	1 cut(s)	74
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	267, 289, 298
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	335, 350
MmeI	TCCRAC	1 cut(s)	234
MseI	TTAA	1 cut(s)	98
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	3 cut(s)	46, 70, 425
MvaI	CCWGG	2 cut(s)	46, 70
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	199, 214
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 402, 459
PflFI	GACNNNGTC	4 cut(s)	7, 10, 271, 359
PkrI	GCNGC	3 cut(s)	109, 320, 368
PleI	GAGTC	2 cut(s)	335, 350
PpsI	GAGTC	2 cut(s)	335, 350
Psp6I	CCWGG	2 cut(s)	44, 68
PspGI	CCWGG	2 cut(s)	44, 68
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	4 cut(s)	7, 10, 271, 359
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	3 cut(s)	108, 319, 367
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	335, 350
ScrFI	CCNGG	3 cut(s)	46, 70, 425
SduI	GDGCHC	1 cut(s)	432
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	371
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	9 cut(s)	108, 136, 171, 232, 247, 318, 367, 379, 415
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	44, 68, 423
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	4 cut(s)	11, 216, 272, 468
TaqI	TCGA	3 cut(s)	123, 222, 462
TasI	AATT	1 cut(s)	371
TauI	GCSGC	3 cut(s)	110, 321, 369
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseFI	GTSAC	2 cut(s)	199, 214
Tsp45I	GTSAC	2 cut(s)	199, 214
TspGWI	ACGGA	4 cut(s)	116, 349, 382, 394
Tth111I	GACNNNGTC	4 cut(s)	7, 10, 271, 359
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	222
ZraI	GACGTC	4 cut(s)	9, 214, 270, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.