Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021619

Physical Location & Seq

Genomic Coordinates Reverse (-)

23254941 .. 23255387

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG145300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGACGTCGTCGTCTCAGTCCCAACAATCCACTCCCTCCTCCTGGGCTTTGCTCCCTTGGAGGACCCGGATCTCGTTATCGCTTCTATCAAAGTTAACGGACGCCGCTCGCCGACCAAACGGCACCATCAACCGCCGTCTCATGAGCTTCCTCGACTTACGCTCCTCCGCCACTCCCTCAGCTCCCTACAAAGGCGTCACCACCTTCAACGTCACCGTCGACCAAACCCGCAACCTCTGGTTCCGCTTCTTCGTCCCCTCTATGACGTCGTCTTCCCCCGCCTCTTTACCCGTCGTCGTTATCTTCCACGGCGGCGGCTTCAGCTTTCTCAGCCCGGACTCCTACGCCTACGACGCCGTCTGCCGCAAATTCGCCCGCGAAATCCCTGCCGTCGTAGTCTCCGTCAACTACCGCCTCTCCCCGGAGCACGGCTACCCCTGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

10.21

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	83 - 140	1.4e-08	Carboxylesterase family
Abhydrolase_3	PF07859	99 - 147	7.8e-15	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021619)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003393.1_g000010 Rmu_sc0017088.1_g000001 Rmu_ssc0000259.1_g000018
rosa_samantha	Rh6BG145300 Rh6DG129600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	2 cut(s)	8, 269
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	378
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	304
AcyI	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
AfiI	CCNNNNNNNGG	4 cut(s)	42, 191, 421, 428
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	147, 182, 324
AluI	AGCT	3 cut(s)	147, 182, 324
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	3 cut(s)	18, 143, 403
AlwI	GGATC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	3 cut(s)	67, 335, 422
AsuHPI	GGTGA	2 cut(s)	190, 205
AvaII	GGWCC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	6 cut(s)	120, 136, 325, 341, 374, 445
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	3 cut(s)	67, 335, 422
BcoDI	GTCTC	3 cut(s)	18, 143, 403
BisI	GCNGC	4 cut(s)	105, 313, 316, 364
BlsI	GCNGC	4 cut(s)	106, 314, 317, 365
Bme1390I	CCNGG	4 cut(s)	43, 67, 335, 422
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	65, 124, 242
BmrFI	CCNGG	4 cut(s)	43, 67, 335, 422
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	178
BpuMI	CCSGG	3 cut(s)	67, 335, 422
BsaHI	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
BsaJI	CCNNGG	4 cut(s)	42, 56, 307, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 401, 431
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 191, 421, 428
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	4 cut(s)	42, 56, 307, 420
BseLI	CCNNNNNNNGG	4 cut(s)	42, 191, 421, 428
BseMII	CTCAG	3 cut(s)	29, 192, 343
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	2 cut(s)	28, 154
Bsh1236I	CGCG	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	67, 335, 422
BslFI	GGGAC	2 cut(s)	4, 239
BslI	CCNNNNNNNGG	4 cut(s)	42, 191, 421, 428
BsmAI	GTCTC	3 cut(s)	18, 143, 403
BsmBI	CGTCTC	2 cut(s)	18, 143
BsmFI	GGGAC	2 cut(s)	4, 239
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	69
BspCNI	CTCAG	3 cut(s)	28, 191, 342
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	65, 124, 242
BspPI	GGATC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	4 cut(s)	42, 56, 307, 420
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
BstC8I	GCNNGC	2 cut(s)	109, 376
BstDEI	CTNAG	3 cut(s)	15, 178, 329
BstDSI	CCRYGG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	3 cut(s)	18, 143, 403
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 330, 353, 438
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	4 cut(s)	41, 65, 333, 420
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	109, 376
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	3 cut(s)	110, 184, 362
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	7 cut(s)	47, 147, 182, 318, 324, 333, 432
CviKI_1	RGCY	7 cut(s)	47, 147, 182, 318, 324, 333, 432
DdeI	CTNAG	3 cut(s)	15, 178, 329
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
Esp3I	CGTCTC	2 cut(s)	18, 143
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	143, 263
FaqI	GGGAC	2 cut(s)	4, 239
FatI	CATG	1 cut(s)	141
FauI	CCCGC	3 cut(s)	236, 286, 383
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	105, 313, 316, 364
Fsp4HI	GCNGC	4 cut(s)	105, 313, 316, 364
GluI	GCNGC	4 cut(s)	105, 313, 316, 364
HapII	CCGG	3 cut(s)	67, 335, 422
HgaI	GACGC	3 cut(s)	110, 184, 362
Hin1I	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
Hin1II	CATG	1 cut(s)	145
HincII	GTYRAC	3 cut(s)	96, 220, 406
HindII	GTYRAC	3 cut(s)	96, 220, 406
HinfI	GANTC	1 cut(s)	338
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	3 cut(s)	67, 335, 422
HphI	GGTGA	2 cut(s)	190, 205
Hpy166II	GTNNAC	3 cut(s)	96, 220, 406
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	96, 220, 406
Hpy99I	CGWCG	8 cut(s)	10, 13, 221, 271, 296, 299, 356, 395
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	3 cut(s)	5, 210, 266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 330, 353, 438
HpyF3I	CTNAG	3 cut(s)	15, 178, 329
HpySE526I	ACGT	3 cut(s)	5, 210, 266
Hsp92I	GRCGYC	5 cut(s)	5, 102, 195, 266, 354
Hsp92II	CATG	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	57, 167, 187, 424
LpnPI	CCDG	7 cut(s)	28, 55, 80, 223, 348, 399, 435
MaeII	ACGT	3 cut(s)	5, 210, 266
MaeIII	GTNAC	2 cut(s)	196, 211
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	241, 264, 295
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	95
MspI	CCGG	3 cut(s)	67, 335, 422
MspR9I	CCNGG	4 cut(s)	43, 67, 335, 422
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	321, 330, 353, 438
NciI	CCSGG	3 cut(s)	67, 335, 422
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	65, 124, 242
NmuCI	GTSAC	2 cut(s)	196, 211
PagI	TCATGA	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 399
PflFI	GACNNNGTC	3 cut(s)	7, 268, 356
PkrI	GCNGC	4 cut(s)	106, 314, 317, 365
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	3 cut(s)	65, 124, 242
PspPI	GGNCC	1 cut(s)	63
PspPPI	RGGWCCY	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	69
PsyI	GACNNNGTC	3 cut(s)	7, 268, 356
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	4 cut(s)	105, 313, 316, 364
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	4 cut(s)	43, 67, 335, 422
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	8 cut(s)	8, 149, 184, 206, 213, 237, 269, 326
SinI	GGWCC	1 cut(s)	63
Sse9I	AATT	1 cut(s)	368
StyD4I	CCNGG	4 cut(s)	41, 65, 333, 420
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	8, 213, 269
TaqI	TCGA	2 cut(s)	153, 219
TasI	AATT	1 cut(s)	368
TauI	GCSGC	4 cut(s)	107, 315, 318, 366
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	2 cut(s)	196, 211
Tsp45I	GTSAC	2 cut(s)	196, 211
TspGWI	ACGGA	2 cut(s)	113, 391
Tth111I	GACNNNGTC	3 cut(s)	7, 268, 356
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	219
ZraI	GACGTC	2 cut(s)	6, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.