Rmu_sc0018900.1_g000001

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018900.1
Physical Location & Seq
Reverse (-)
4544 .. 5031
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018900.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
atggacgcgctcgggctggttttgcagctggcgaaagcaccactgatcgtgccgctgttgcgagttttggtggcgttgtgcttggggatgtctgtgttgctctttgtggagaaggtttacatgggaattgtcataatgttggtcaaggttttcagaagaagacctgagaagcgttggaaatgggaggcaattaaggatgatgtggagcttggcaattctgcttaccctatggttcttgtgcaaattccaatgtacaatgaaaaagaggtttatcaactttctattggggctgcatgtgggctttcatggccttctgataggatcgtagttcaagttcttgatgattcaactgacccactcattaaggttcaaacttcaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

7.72

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022545)

Species Orthologous Gene IDs
pyrus_communis pycom07g05490
rosa_chinensis RchiOBHm_Chr5g0055371
rosa_multiflora Rmu_sc0001673.1_g000013 Rmu_sc0018900.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 4 cut(s) 332, 348, 371, 378
AluBI AGCT 2 cut(s) 28, 208
AluI AGCT 2 cut(s) 28, 208
AlwI GGATC 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 25, 290
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 37, 277
BisI GCNGC 3 cut(s) 26, 53, 291
BlsI GCNGC 3 cut(s) 27, 54, 292
BmeT110I CYCGRG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 166
BseGI GGATG 2 cut(s) 93, 202
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 37, 277
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 11
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 45, 321
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 8
BspPI GGATC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 252
BssMI GATC 2 cut(s) 45, 321
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 93, 202
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 48, 324
BstMBI GATC 2 cut(s) 45, 321
BstMWI GCNNNNNNNGC 3 cut(s) 22, 58, 307
BstNSI RCATGY 1 cut(s) 297
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 37, 277
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 93, 202
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 10
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 121, 294, 306
CviJI RGCY 6 cut(s) 16, 28, 208, 290, 301, 310
CviKI_1 RGCY 6 cut(s) 16, 28, 208, 290, 301, 310
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 47, 323
DpnII GATC 2 cut(s) 45, 321
Eco88I CYCGRG 1 cut(s) 11
FaeI CATG 3 cut(s) 124, 297, 309
FaiI YATR 5 cut(s) 122, 134, 230, 295, 307
FatI CATG 3 cut(s) 120, 293, 305
Fnu4HI GCNGC 3 cut(s) 26, 53, 291
FokI GGATG 2 cut(s) 100, 209
Fsp4HI GCNGC 3 cut(s) 26, 53, 291
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 26, 53, 291
HaeIII GGCC 1 cut(s) 310
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 124, 297, 309
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 155, 316
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 106, 321
HpyCH4V TGCA 3 cut(s) 25, 241, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 58, 307
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 3 cut(s) 124, 297, 309
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 45, 321
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 2, 14, 177
Lsp1109I GCAGC 2 cut(s) 37, 277
MalI GATC 2 cut(s) 47, 323
MboI GATC 2 cut(s) 45, 321
MboII GAAGA 2 cut(s) 168, 171
MluCI AATT 4 cut(s) 126, 189, 214, 243
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 2 cut(s) 178, 259
MseI TTAA 2 cut(s) 192, 363
MspA1I CMGCKG 2 cut(s) 28, 55
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 22, 58, 307
NdeII GATC 2 cut(s) 45, 321
NlaIII CATG 3 cut(s) 124, 297, 309
NspI RCATGY 1 cut(s) 297
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 3 cut(s) 27, 54, 292
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 192, 363
SatI GCNGC 3 cut(s) 26, 53, 291
Sau3AI GATC 2 cut(s) 45, 321
SetI ASST 7 cut(s) 30, 117, 150, 166, 210, 270, 369
Sse9I AATT 4 cut(s) 126, 189, 214, 243
SsiI CCGC 1 cut(s) 53
TasI AATT 4 cut(s) 126, 189, 214, 243
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 192, 363
Tru9I TTAA 2 cut(s) 192, 363
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 25, 290
TspDTI ATGAA 2 cut(s) 273, 294
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.