Rmu_sc0021934.1_g000012

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021934.1
Physical Location & Seq
Forward (+)
32536 .. 33906
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021934.1_g000012.1.cds

Sequence Viewer

Length: 1371 bp
atgcatcatgagtgggatgaaaatatccaacctgaaaccctagtctcccacgatcaggaacaattgccgctatccgaaatgtggaaggaaatgcaaggccttaataactgggaaggccttctagacccaacactcaatccccatcttcgacaagaaatcatccgatatggtgaattcgcccaagcctcttatgattcctttaacttcgaccctcactccaagtactgtggcacgtgtaaataccaaggtgctcatttcttcgaaaacctggacatggcagatcgaggctaccaaatcagccgatatctatatgcaacttccaacatcaatctccccaatttcttccaaaagtcgaaggtcagtagcgtgtggagcacccatgcaaactggatgggctacgtggccgtagccacagacgtcaatgaaatcaaaagacttggtcgaagagacatagtgattgcatggagaggaacagtcacataccttgaatggatttacgacctcaaagacattctccggccagcttatttttgcagtgatccctcagtgaagatcgaatctgggttccatgaattatacaccaagaaagaagatacgtgcaaatactgctcattttctgctcgtgaacaagttctagcagagatcaagaggctccgtgaacggtacgaaggagaagagattagtattacaatcacaggtcatagtcttggggctgctttggctattttgagtgcctatgatattgcagaaatgggactagatgttatacgtgatgatggtagggtggagactaaaattccaatcaccgtgtactcattttcgggtcctagagtgggaaatcttaagttcaaggaaagatgtgatgagcttggagttaaggtgctgagagtcatcaatgtgcatgacaaggtacctacagtgcctggtatcattgcaaatgagaagtttaggtatcaaaagtacatagaagacactatttcatttccttggagttatgctcatgttggagtggagcttgcactggatcacacccaaagcccatttctcaagcccactaatgattttgggtgtgcacacaatcttgaagctcatttgcatttggttgatgggtaccatgggaagggcaaaaagttctgcttggttaccaagagggatattgcacttgtgaacaagagctgtaattttttgaagagccaatatggcgtgccgccacactggcggcaagatgagaataagggtatggtgaggaatagggatgggaggtgggttctgccagagaggcccaaagttgaagctcacccacctgatatggttcaccaccttgagcaactgctcaataaatcatctggctctcaacttgaaatgccttga

Protein Analysis

456

Amino Acids

52.59

Weight (kDa)

6.29

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51440
prunus_persica Prupe.4G253800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0052751
rosa_laevigata RLG00000034801
rosa_multiflora Rmu_sc0010265.1_g000002 Rmu_sc0021934.1_g000012
rosa_roxburghii Rroxscaffold_1G00028560
rosa_rugosa Rorug05G0270200
rosa_samantha Rh5AG342200 Rh5BG352900 Rh5CG379400 Rh5DG369200
rosa_wichuraiana Rw5G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 420
Acc65I GGTACC 2 cut(s) 910, 1110
AccB1I GGYRCC 2 cut(s) 910, 1110
AciI CCGC 3 cut(s) 68, 1208, 1219
AclWI GGATC 2 cut(s) 533, 1032
AcoI YGGCCR 2 cut(s) 402, 518
AcsI RAATTY 2 cut(s) 173, 795
AcvI CACGTG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 6 cut(s) 224, 665, 812, 912, 962, 1112
AfiI CCNNNNNNNGG 5 cut(s) 55, 81, 274, 833, 1120
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 6 cut(s) 488, 850, 1085, 1189, 1292, 1361
AjnI CCWGG 2 cut(s) 267, 922
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
AluBI AGCT 6 cut(s) 524, 868, 1015, 1088, 1176, 1295
AluI AGCT 6 cut(s) 524, 868, 1015, 1088, 1176, 1295
Alw21I GWGCWC 3 cut(s) 253, 377, 1075
Alw26I GTCTC 3 cut(s) 49, 441, 782
Alw44I GTGCAC 1 cut(s) 1071
AlwI GGATC 2 cut(s) 533, 1032
AlwNI CAGNNNCTG 1 cut(s) 923
AoxI GGCC 5 cut(s) 97, 115, 402, 518, 1280
ApaLI GTGCAC 1 cut(s) 1071
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 173, 795
Asp700I GAANNNNTTC 2 cut(s) 117, 630
Asp718I GGTACC 2 cut(s) 910, 1110
AspS9I GGNCC 2 cut(s) 824, 1281
AsuHPI GGTGA 5 cut(s) 182, 796, 1255, 1289, 1307
AsuII TTCGAA 1 cut(s) 261
AvaII GGWCC 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 1075
BanI GGYRCC 2 cut(s) 910, 1110
BauI CACGAG 1 cut(s) 621
BbrPI CACGTG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 3 cut(s) 253, 377, 1075
BbvI GCAGC 1 cut(s) 700
BccI CCATC 5 cut(s) 150, 385, 770, 1100, 1250
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 2 cut(s) 269, 924
BcoDI GTCTC 3 cut(s) 49, 441, 782
BfaI CTAG 5 cut(s) 41, 122, 635, 758, 828
BfmI CTRYAG 1 cut(s) 915
BfrI CTTAAG 1 cut(s) 842
BglI GCCNNNNNGGC 3 cut(s) 1200, 1216, 1279
BisI GCNGC 4 cut(s) 68, 714, 1208, 1220
BlsI GCNGC 4 cut(s) 69, 715, 1209, 1221
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 269, 924
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 2 cut(s) 824, 1281
BmiI GGNNCC 5 cut(s) 566, 653, 825, 912, 1112
BmrFI CCNGG 2 cut(s) 269, 924
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 975
BplI GAGNNNNNCTC 2 cut(s) 982, 1014
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 1031, 1343
BsaAI YACGTR 4 cut(s) 234, 400, 597, 770
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 244, 986, 1114
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 864, 894
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 81, 274, 833, 1120
Bse1I ACTGG 4 cut(s) 113, 392, 1026, 1220
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 269, 924
BseDI CCNNGG 3 cut(s) 244, 986, 1114
BseGI GGATG 4 cut(s) 22, 159, 396, 1261
BseLI CCNNNNNNNGG 5 cut(s) 55, 81, 274, 833, 1120
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 558, 875
BseNI ACTGG 4 cut(s) 113, 392, 1026, 1220
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 1 cut(s) 700
BshFI GGCC 5 cut(s) 99, 117, 404, 520, 1282
BshNI GGYRCC 2 cut(s) 910, 1110
BsiHKAI GWGCWC 3 cut(s) 253, 377, 1075
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 5 cut(s) 55, 81, 274, 833, 1120
BsmAI GTCTC 3 cut(s) 49, 441, 782
BsmFI GGGAC 1 cut(s) 768
BsnI GGCC 5 cut(s) 99, 117, 404, 520, 1282
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 253, 377, 1075
Bsp143I GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
Bsp19I CCATGG 1 cut(s) 1114
BspACI CCGC 3 cut(s) 68, 1208, 1219
BspANI GGCC 5 cut(s) 99, 117, 404, 520, 1282
BspCNI CTCAG 2 cut(s) 557, 876
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 566, 653, 825, 912, 1112
BspPI GGATC 2 cut(s) 533, 1032
BspQI GCTCTTC 1 cut(s) 1184
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 910, 1110
BspTI CTTAAG 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 930
BsrI ACTGG 4 cut(s) 113, 392, 1026, 1220
BssECI CCNNGG 3 cut(s) 244, 986, 1114
BssMI GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
BssNI GRCGYC 1 cut(s) 417
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 3 cut(s) 244, 986, 1114
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 2 cut(s) 269, 924
Bst4CI ACNGT 5 cut(s) 227, 475, 663, 808, 919
Bst6I CTCTTC 3 cut(s) 439, 669, 1184
BstACI GRCGYC 1 cut(s) 417
BstAFI CTTAAG 1 cut(s) 842
BstAPI GCANNNNNTGC 1 cut(s) 606
BstBAI YACGTR 4 cut(s) 234, 400, 597, 770
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 522, 1017, 1205
BstDEI CTNAG 2 cut(s) 544, 884
BstDSI CCRYGG 1 cut(s) 1114
BstEII GGTNACC 1 cut(s) 1141
BstF5I GGATG 4 cut(s) 22, 159, 396, 1261
BstKTI GATC 6 cut(s) 55, 283, 541, 555, 645, 1027
BstMAI GTCTC 3 cut(s) 49, 441, 782
BstMBI GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
BstMWI GCNNNNNNNGC 6 cut(s) 372, 606, 719, 1200, 1216, 1279
BstNI CCWGG 2 cut(s) 269, 924
BstPI GGTNACC 1 cut(s) 1141
BstSCI CCNGG 2 cut(s) 267, 922
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 1 cut(s) 1075
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 975
BsuRI GGCC 5 cut(s) 99, 117, 404, 520, 1282
BtgI CCRYGG 1 cut(s) 1114
BtsCI GGATG 4 cut(s) 22, 159, 396, 1261
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 5 cut(s) 541, 552, 924, 1019, 1213
Cac8I GCNNGC 3 cut(s) 522, 1017, 1205
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 824, 1281
Csp6I GTAC 6 cut(s) 223, 664, 811, 911, 961, 1111
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 8 cut(s) 8, 274, 380, 462, 569, 902, 1001, 1115
CviQI GTAC 6 cut(s) 223, 664, 811, 911, 961, 1111
DdeI CTNAG 2 cut(s) 544, 884
DpnI GATC 6 cut(s) 54, 282, 540, 554, 644, 1026
DpnII GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
EaeI YGGCCR 2 cut(s) 402, 518
Eam1104I CTCTTC 3 cut(s) 439, 669, 1184
EarI CTCTTC 3 cut(s) 439, 669, 1184
Eco130I CCWWGG 3 cut(s) 244, 986, 1114
Eco147I AGGCCT 2 cut(s) 99, 117
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 824
Eco72I CACGTG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 1141
EcoO109I RGGNCCY 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 1141
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 267, 922
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 3 cut(s) 244, 986, 1114
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 244, 986, 1114
FaeI CATG 8 cut(s) 11, 277, 383, 465, 572, 905, 1004, 1118
FalI AAGNNNNNCTT 2 cut(s) 1121, 1153
FaqI GGGAC 1 cut(s) 768
FatI CATG 8 cut(s) 7, 273, 379, 461, 568, 901, 1000, 1114
Fnu4HI GCNGC 4 cut(s) 68, 714, 1208, 1220
FokI GGATG 4 cut(s) 29, 146, 403, 1268
Fsp4HI GCNGC 4 cut(s) 68, 714, 1208, 1220
FspBI CTAG 5 cut(s) 41, 122, 635, 758, 828
GluI GCNGC 4 cut(s) 68, 714, 1208, 1220
HaeIII GGCC 5 cut(s) 99, 117, 404, 520, 1282
HapII CCGG 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 8 cut(s) 11, 277, 383, 465, 572, 905, 1004, 1118
HinfI GANTC 3 cut(s) 194, 557, 888
HpaII CCGG 1 cut(s) 517
HphI GGTGA 5 cut(s) 182, 796, 1255, 1289, 1307
Hpy166II GTNNAC 6 cut(s) 626, 659, 811, 1073, 1168, 1315
Hpy188I TCNGA 2 cut(s) 76, 164
Hpy188III TCNNGA 6 cut(s) 8, 56, 122, 623, 646, 1082
Hpy8I GTNNAC 6 cut(s) 626, 659, 811, 1073, 1168, 1315
HpyAV CCTTC 6 cut(s) 79, 107, 128, 349, 662, 1114
HpyCH4III ACNGT 5 cut(s) 227, 475, 663, 808, 919
HpyCH4IV ACGT 5 cut(s) 233, 399, 417, 596, 769
HpyF10VI GCNNNNNNNGC 6 cut(s) 372, 606, 719, 1200, 1216, 1279
HpyF3I CTNAG 2 cut(s) 544, 884
HpySE526I ACGT 5 cut(s) 233, 399, 417, 596, 769
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 8 cut(s) 11, 277, 383, 465, 572, 905, 1004, 1118
KpnI GGTACC 2 cut(s) 914, 1114
Kzo9I GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
LguI GCTCTTC 1 cut(s) 1184
LmnI GCTCC 3 cut(s) 372, 657, 1012
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 13
MaeI CTAG 5 cut(s) 41, 122, 635, 758, 828
MaeII ACGT 5 cut(s) 233, 399, 417, 596, 769
MaeIII GTNAC 2 cut(s) 475, 1141
MalI GATC 6 cut(s) 54, 282, 540, 554, 644, 1026
MboI GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
MboII GAAGA 9 cut(s) 137, 250, 334, 456, 562, 602, 686, 980, 1201
MfeI CAATTG 1 cut(s) 62
MhlI GDGCHC 3 cut(s) 253, 377, 1075
MluCI AATT 6 cut(s) 62, 173, 337, 572, 795, 1180
MlyI GAGTC 1 cut(s) 897
MmeI TCCRAC 3 cut(s) 52, 345, 985
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 117, 630
MseI TTAA 4 cut(s) 102, 201, 843, 876
MslI CAYNNNNRTG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 2 cut(s) 269, 924
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 2 cut(s) 269, 924
MwoI GCNNNNNNNGC 6 cut(s) 372, 606, 719, 1200, 1216, 1279
NcoI CCATGG 1 cut(s) 1114
NdeII GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
NlaIII CATG 8 cut(s) 11, 277, 383, 465, 572, 905, 1004, 1118
NlaIV GGNNCC 5 cut(s) 566, 653, 825, 912, 1112
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 261
PagI TCATGA 1 cut(s) 7
PceI AGGCCT 2 cut(s) 99, 117
PciSI GCTCTTC 1 cut(s) 1184
PdmI GAANNNNTTC 2 cut(s) 117, 630
PfeI GAWTC 2 cut(s) 194, 557
PflFI GACNNNGTC 1 cut(s) 438
PkrI GCNGC 4 cut(s) 69, 715, 1209, 1221
PleI GAGTC 1 cut(s) 896
PmaCI CACGTG 1 cut(s) 234
PmlI CACGTG 1 cut(s) 234
PpsI GAGTC 1 cut(s) 896
Ppu21I YACGTR 4 cut(s) 234, 400, 597, 770
PpuMI RGGWCCY 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 267, 922
PspCI CACGTG 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 267, 922
PspN4I GGNNCC 5 cut(s) 566, 653, 825, 912, 1112
PspPI GGNCC 2 cut(s) 824, 1281
PspPPI RGGWCCY 1 cut(s) 824
PstNI CAGNNNCTG 1 cut(s) 923
PsyI GACNNNGTC 1 cut(s) 438
RsaI GTAC 6 cut(s) 224, 665, 812, 912, 962, 1112
RsaNI GTAC 6 cut(s) 223, 664, 811, 911, 961, 1111
RseI CAYNNNNRTG 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 1184
SaqAI TTAA 4 cut(s) 102, 201, 843, 876
SatI GCNGC 4 cut(s) 68, 714, 1208, 1220
Sau3AI GATC 6 cut(s) 52, 280, 538, 552, 642, 1024
Sau96I GGNCC 2 cut(s) 824, 1281
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 897
ScrFI CCNGG 2 cut(s) 269, 924
SduI GDGCHC 3 cut(s) 253, 377, 1075
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 915
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 3 cut(s) 842, 1046, 1322
SmoI CTYRAG 3 cut(s) 842, 1046, 1322
Sse9I AATT 6 cut(s) 62, 173, 337, 572, 795, 1180
SseBI AGGCCT 2 cut(s) 99, 117
SsiI CCGC 3 cut(s) 68, 1208, 1219
SspMI CTAG 5 cut(s) 41, 122, 635, 758, 828
StuI AGGCCT 2 cut(s) 99, 117
StyD4I CCNGG 2 cut(s) 267, 922
StyI CCWWGG 3 cut(s) 244, 986, 1114
TaaI ACNGT 5 cut(s) 227, 475, 663, 808, 919
TaiI ACGT 5 cut(s) 236, 402, 420, 599, 772
TaqI TCGA 7 cut(s) 148, 207, 261, 283, 353, 442, 555
TasI AATT 6 cut(s) 62, 173, 337, 572, 795, 1180
TatI WGTACW 3 cut(s) 222, 810, 960
TauI GCSGC 3 cut(s) 70, 1210, 1222
TfiI GAWTC 2 cut(s) 194, 557
Tru1I TTAA 4 cut(s) 102, 201, 843, 876
Tru9I TTAA 4 cut(s) 102, 201, 843, 876
TscAI CASTG 5 cut(s) 541, 552, 924, 1026, 1220
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 33, 438, 585, 969
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 5 cut(s) 541, 552, 924, 1026, 1220
Tth111I GACNNNGTC 1 cut(s) 438
Vha464I CTTAAG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 1071
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 2 cut(s) 173, 795
XbaI TCTAGA 1 cut(s) 121
XmnI GAANNNNTTC 2 cut(s) 117, 630
XspI CTAG 5 cut(s) 41, 122, 635, 758, 828
ZraI GACGTC 1 cut(s) 418
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.