Rmu_sc0021981.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021981.1
OG0016160
Physical Location & Seq
Forward (+)
570 .. 1792
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021981.1_g000001.1.cds

Sequence Viewer

Length: 1011 bp
atggttagtgcactaaccaggactaaacttcaagatggatatgttgcatatccttgggaaaggaagatgcaggagttgctaccaattccctattctagtagctttctatcagtactctttcttccaaaggcttcagatcgcgcagcttctcgctacaatgacttggatgacacccttgctagggcaaatgtctggcttaatgcctcccaggcctctggtgtccccgttgttttcatgaacatccagaccgagtcccttcttaccaagatctccggtgagacagcttcttcaactgtaaacgcagggtcgttatccgatttggctaatcttgcaagtgcaagcttgtacggttttgaagattaccatggggttgacattggtgtagtccgagctgttcgcctatggtatgctcctcttggtccagaaattccagttgagatcaaattgcaagaaggagacgtgaaacttggttttgccattagccgcacggaagaggggtttatatacgtttcatcagtggctggtggcgatgaaaatgcaccttcaagtcgatcggggctgagcaatctgtacaaggaagcaatgaatgcatcaaggatgctggtggtgtcaagggtctctaaccaaaaggtgcttccttggatggtttcctcaacaggagcagttcgatgctacgataccgtttcactcagccagaagctctcactgcaccgtcacgccaagattccggtgtccattcacgtttttctctgggatagaacagtggttccttcaaatacaaaccaaacaagaaggggcgcctccccaccaactatgccattacctttaccgcctgaggttcaattgtctcgtcagccgaatgagaaccaaatacaacctttaccattagaacttgctgatgaaagtggaagtgtcatgagtgaacggttatcagagaggcttgagagagatacagctggggagtcctcatttagattccatgatttttcactttctagcaattgggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.95

Weight (kDa)

5.81

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12070
fragaria_vesca FvH4_3g43310
malus_domestica MD11G1027800.v1.1
prunus_persica Prupe.6G021800_v2.0.a1
pyrus_communis pycom11g02140
rosa_chinensis RchiOBHm_Chr5g0077371
rosa_laevigata RLG00000036692
rosa_multiflora Rmu_sc0021981.1_g000001
rosa_roxburghii Rroxscaffold_1G00004530
rosa_rugosa Rorug05G0454600
rosa_samantha Rh5AG509500 Rh5BG531200 Rh5CG555500 Rh5DG543400
rosa_wichuraiana Rw5G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 484, 830
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 3 cut(s) 114, 347, 572
AfiI CCNNNNNNNGG 2 cut(s) 180, 181
AgsI TTSAA 6 cut(s) 32, 291, 356, 546, 774, 842
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 2 cut(s) 17, 207
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 108, 618, 650
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
AluBI AGCT 7 cut(s) 102, 146, 284, 342, 392, 700, 956
AluI AGCT 7 cut(s) 102, 146, 284, 342, 392, 700, 956
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 4 cut(s) 272, 450, 622, 852
Alw44I GTGCAC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 426
AspLEI GCGC 2 cut(s) 143, 800
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 797
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 29, 637
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 19, 209
BcoDI GTCTC 4 cut(s) 272, 450, 622, 852
BfaI CTAG 3 cut(s) 96, 180, 996
BfoI RGCGCY 1 cut(s) 801
BglI GCCNNNNNGGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 267
BisI GCNGC 2 cut(s) 144, 484
BlpI GCTNAGC 1 cut(s) 560
BlsI GCNGC 2 cut(s) 145, 485
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 19, 209
Bme18I GGWCC 1 cut(s) 419
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 768, 799
BmrFI CCNGG 2 cut(s) 19, 209
BmsI GCATC 4 cut(s) 57, 588, 599, 659
Bpu1102I GCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 962
BsaHI GRCGYC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 53, 207, 364, 638
BsaWI WCCGGW 2 cut(s) 272, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 181
Bse1I ACTGG 1 cut(s) 431
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 588
BseBI CCWGG 2 cut(s) 19, 209
BseDI CCNNGG 4 cut(s) 53, 207, 364, 638
BseGI GGATG 4 cut(s) 172, 240, 603, 648
BseLI CCNNNNNNNGG 2 cut(s) 180, 181
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 3 cut(s) 551, 703, 825
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 402
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 956
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 554
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 797
BsiEI CGRYCG 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 273, 728
BslFI GGGAC 2 cut(s) 206, 238
BslI CCNNNNNNNGG 2 cut(s) 180, 181
BsmAI GTCTC 4 cut(s) 272, 450, 622, 852
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 206, 238
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 4 cut(s) 136, 267, 438, 551
Bsp1720I GCTNAGC 1 cut(s) 560
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 2 cut(s) 484, 830
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 3 cut(s) 552, 702, 826
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 2 cut(s) 234, 915
BspLI GGNNCC 2 cut(s) 768, 799
BspT107I GGYRCC 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 4 cut(s) 53, 207, 364, 638
BssMI GATC 4 cut(s) 136, 267, 438, 551
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 3 cut(s) 53, 364, 638
Bst2UI CCWGG 2 cut(s) 19, 209
Bst4CI ACNGT 6 cut(s) 295, 350, 682, 713, 763, 927
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 798
BstAPI GCANNNNNTGC 2 cut(s) 76, 587
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 560, 689, 834
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 4 cut(s) 172, 240, 603, 648
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 2 cut(s) 143, 800
BstKTI GATC 4 cut(s) 139, 270, 441, 554
BstMAI GTCTC 4 cut(s) 272, 450, 622, 852
BstMBI GATC 4 cut(s) 136, 267, 438, 551
BstMCI CGRYCG 1 cut(s) 554
BstMWI GCNNNNNNNGC 5 cut(s) 76, 209, 329, 587, 706
BstNI CCWGG 2 cut(s) 19, 209
BstSCI CCNGG 2 cut(s) 17, 207
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 834
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 4 cut(s) 172, 240, 603, 648
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 3 cut(s) 522, 704, 768
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 2 cut(s) 234, 915
CfoI GCGC 2 cut(s) 143, 800
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 113, 346, 571
CviAII CATG 4 cut(s) 235, 365, 916, 980
CviQI GTAC 3 cut(s) 113, 346, 571
DdeI CTNAG 3 cut(s) 560, 689, 834
DinI GGCGCC 1 cut(s) 799
DpnI GATC 4 cut(s) 138, 269, 440, 553
DpnII GATC 4 cut(s) 136, 267, 438, 551
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 3 cut(s) 53, 364, 638
Eco147I AGGCCT 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 834
EcoRII CCWGG 2 cut(s) 17, 207
EcoT14I CCWWGG 3 cut(s) 53, 364, 638
EcoT22I ATGCAT 1 cut(s) 592
EgeI GGCGCC 1 cut(s) 799
EheI GGCGCC 1 cut(s) 799
ErhI CCWWGG 3 cut(s) 53, 364, 638
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 4 cut(s) 238, 368, 919, 983
FaqI GGGAC 2 cut(s) 206, 238
FatI CATG 4 cut(s) 234, 364, 915, 979
Fnu4HI GCNGC 2 cut(s) 144, 484
FokI GGATG 4 cut(s) 179, 227, 610, 655
Fsp4HI GCNGC 2 cut(s) 144, 484
FspBI CTAG 3 cut(s) 96, 180, 996
GlaI GCGC 2 cut(s) 142, 799
GluI GCNGC 2 cut(s) 144, 484
GsaI CCCAGC 1 cut(s) 960
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 1 cut(s) 212
HapII CCGG 2 cut(s) 273, 728
HhaI GCGC 2 cut(s) 143, 800
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 4 cut(s) 238, 368, 919, 983
Hin6I GCGC 2 cut(s) 141, 798
HinP1I GCGC 2 cut(s) 141, 798
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 4 cut(s) 251, 724, 962, 975
HpaII CCGG 2 cut(s) 273, 728
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 4 cut(s) 11, 298, 373, 923
Hpy188I TCNGA 4 cut(s) 136, 316, 389, 934
Hpy188III TCNNGA 5 cut(s) 32, 235, 244, 422, 916
Hpy8I GTNNAC 4 cut(s) 11, 298, 373, 923
HpyAV CCTTC 5 cut(s) 266, 446, 552, 780, 786
HpyCH4III ACNGT 6 cut(s) 295, 350, 682, 713, 763, 927
HpyCH4IV ACGT 3 cut(s) 459, 507, 741
HpyCH4V TGCA 9 cut(s) 11, 47, 70, 332, 338, 448, 539, 590, 709
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 209, 329, 587, 706
HpyF3I CTNAG 3 cut(s) 560, 689, 834
HpySE526I ACGT 3 cut(s) 459, 507, 741
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 4 cut(s) 238, 368, 919, 983
HspAI GCGC 2 cut(s) 141, 798
KasI GGCGCC 1 cut(s) 797
Kzo9I GATC 4 cut(s) 136, 267, 438, 551
LmnI GCTCC 2 cut(s) 415, 659
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 4 cut(s) 57, 588, 599, 659
MaeI CTAG 3 cut(s) 96, 180, 996
MaeII ACGT 3 cut(s) 459, 507, 741
MaeIII GTNAC 1 cut(s) 713
MalI GATC 4 cut(s) 138, 269, 440, 553
MboI GATC 4 cut(s) 136, 267, 438, 551
MboII GAAGA 5 cut(s) 76, 113, 279, 368, 503
MfeI CAATTG 2 cut(s) 842, 1000
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 5 cut(s) 84, 426, 443, 842, 1000
Mly113I GGCGCC 1 cut(s) 798
MlyI GAGTC 2 cut(s) 260, 971
MnlI CCTC 9 cut(s) 214, 223, 423, 487, 661, 811, 829, 930, 976
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 2 cut(s) 273, 728
MspR9I CCNGG 2 cut(s) 19, 209
MunI CAATTG 2 cut(s) 842, 1000
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 19, 209
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 76, 209, 329, 587, 706
NarI GGCGCC 1 cut(s) 798
NcoI CCATGG 1 cut(s) 364
NdeII GATC 4 cut(s) 136, 267, 438, 551
NlaIII CATG 4 cut(s) 238, 368, 919, 983
NlaIV GGNNCC 2 cut(s) 768, 799
NmuCI GTSAC 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 592
PagI TCATGA 2 cut(s) 234, 915
PceI AGGCCT 1 cut(s) 212
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 724, 975
PflFI GACNNNGTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 145, 485
Ple19I CGATCG 1 cut(s) 554
PleI GAGTC 2 cut(s) 259, 970
PluTI GGCGCC 1 cut(s) 801
PpsI GAGTC 2 cut(s) 259, 970
Psp6I CCWGG 2 cut(s) 17, 207
PspFI CCCAGC 1 cut(s) 956
PspGI CCWGG 2 cut(s) 17, 207
PspN4I GGNNCC 2 cut(s) 768, 799
PspPI GGNCC 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 250
PvuI CGATCG 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 3 cut(s) 114, 347, 572
RsaNI GTAC 3 cut(s) 113, 346, 571
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 144, 484
Sau3AI GATC 4 cut(s) 136, 267, 438, 551
Sau96I GGNCC 1 cut(s) 419
ScaI AGTACT 1 cut(s) 114
SchI GAGTC 2 cut(s) 260, 971
ScrFI CCNGG 2 cut(s) 19, 209
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 4 cut(s) 57, 588, 599, 659
SfoI GGCGCC 1 cut(s) 799
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 5 cut(s) 84, 426, 443, 842, 1000
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 2 cut(s) 484, 830
SspDI GGCGCC 1 cut(s) 797
SspMI CTAG 3 cut(s) 96, 180, 996
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 17, 207
StyI CCWWGG 3 cut(s) 53, 364, 638
TaaI ACNGT 6 cut(s) 295, 350, 682, 713, 763, 927
TaiI ACGT 3 cut(s) 462, 510, 744
TaqI TCGA 2 cut(s) 550, 667
TaqII GACCGA 1 cut(s) 263
TasI AATT 5 cut(s) 84, 426, 443, 842, 1000
TatI WGTACW 2 cut(s) 112, 570
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 2 cut(s) 724, 975
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 3 cut(s) 522, 711, 768
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 6 cut(s) 223, 251, 501, 546, 599, 915
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 522, 711, 768
Tth111I GACNNNGTC 1 cut(s) 250
VneI GTGCAC 1 cut(s) 9
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 426
XspI CTAG 3 cut(s) 96, 180, 996
ZrmI AGTACT 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.