Rorug05G0454600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016160
Physical Location & Seq
Reverse (-)
62820517 .. 62822002
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0454600.1

Sequence Viewer

Length: 858 bp
ATGTTGAGGCTCCTTGTCGTGGGTGTTGGGCGCGCAACACAAAGCATTAGTGTCAAGGTACCAAGTCCACTTAATTCTAACATAGAGAATGAAGTTCCTCTTTTAGTTTATGAGTTCATACCAAACGGAACTCTTTCCAAGTATATCCAAGGTCAGATCGAGGAATTTCCACTTACATGGAAAATACGGTTACGAATTGCAACTGAAATTGCAGGAGCACTTTTCTACCTACACTCTGCAGCTTCATTTCCCATTTTTCACAGAGACATCAAGTCCACAAACATACTTCTAGATGAAAAATACAGAGCAAAAGTAGCTGACTTTGGAACTTCAAGATCCGTTGGCATTGACCAAACCCACCTGACCACATGTGTACTTGGTACGTTTGGTTATATGGACCCAGAATACTTTCATTCAAGTCAATTTACAGAGAAAAGTGATGTTTATAGCTTCGGAGTTGTCCTTGTTGTGCTTTTGACTGGACAAAAACCAGTTTCTGCTGTAACAAAAATACAAAATCACAAAAAGAATTCAGAAATCTTGCCTCACATTTTATTGCAGGAAGATAGTCTGTGCGAACTTCTCGATGCTCGAGTTCTGAAAGAGGGTTCTGAAACAGATATTAAGGTTGTTGCCAACCTTGCAAAAAAATGTTTGAATGTTAATGGAAGAAATCGCCCTACAATGAGAGAGGTGACAGCAGAGTTGGAGTCCATCCATCTCCATATGTTTGCAGAAAAAGCGTCAAATGCTGATCAACGAAGTAAATCGATTGATAGTTGGGATGGAAGTTCAATAGGAACTGGGATAGCTTCTGATAGGTATGGTGGTGATGAGATCGACTTCATCACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

31.65

Weight (kDa)

6.08

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 29 - 236 1.7e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 233 2.2e-33 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12070
fragaria_vesca FvH4_3g43310
malus_domestica MD11G1027800.v1.1
prunus_persica Prupe.6G021800_v2.0.a1
pyrus_communis pycom11g02140
rosa_chinensis RchiOBHm_Chr5g0077371
rosa_laevigata RLG00000036692
rosa_multiflora Rmu_sc0021981.1_g000001
rosa_roxburghii Rroxscaffold_1G00004530
rosa_rugosa Rorug05G0454600
rosa_samantha Rh5AG509500 Rh5BG531200 Rh5CG555500 Rh5DG543400
rosa_wichuraiana Rw5G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccII CGCG 1 cut(s) 33
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 164, 529
AfaI GTAC 3 cut(s) 60, 375, 382
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 333, 417, 658, 795
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 4 cut(s) 242, 317, 450, 812
AluI AGCT 4 cut(s) 242, 317, 450, 812
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 330
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 591
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 164, 529
Asp700I GAANNNNTTC 2 cut(s) 133, 408
Asp718I GGTACC 1 cut(s) 58
AspLEI GCGC 2 cut(s) 33, 35
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 706, 842
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 251
BccI CCATC 3 cut(s) 722, 726, 779
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 397
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 3 cut(s) 11, 60, 399
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 770
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 3 cut(s) 484, 491, 808
BseCI ATCGAT 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 714, 790
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 3 cut(s) 484, 491, 808
BsePI GCGCGC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 156, 335, 754, 837
BspDI ATCGAT 1 cut(s) 770
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 11, 60, 399
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 58
BsrI ACTGG 3 cut(s) 484, 491, 808
BssECI CCNNGG 1 cut(s) 148
BssHII GCGCGC 1 cut(s) 31
BssMI GATC 4 cut(s) 156, 335, 754, 837
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 2 cut(s) 714, 790
BstFNI CGCG 1 cut(s) 33
BstHHI GCGC 2 cut(s) 33, 35
BstKTI GATC 4 cut(s) 159, 338, 757, 840
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 4 cut(s) 156, 335, 754, 837
BstMWI GCNNNNNNNGC 4 cut(s) 314, 641, 740, 749
BstNSI RCATGY 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 770
BsuTUI ATCGAT 1 cut(s) 770
BtsCI GGATG 2 cut(s) 714, 790
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 2 cut(s) 33, 35
Cfr13I GGNCC 1 cut(s) 397
ClaI ATCGAT 1 cut(s) 770
CseI GACGC 1 cut(s) 732
Csp6I GTAC 3 cut(s) 59, 374, 381
CviAII CATG 2 cut(s) 177, 369
CviJI RGCY 5 cut(s) 10, 242, 317, 450, 812
CviKI_1 RGCY 5 cut(s) 10, 242, 317, 450, 812
CviQI GTAC 3 cut(s) 59, 374, 381
DpnI GATC 4 cut(s) 158, 337, 756, 839
DpnII GATC 4 cut(s) 156, 335, 754, 837
DriI GACNNNNNGTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 180, 372
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 2 cut(s) 176, 368
FauNDI CATATG 1 cut(s) 726
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 701, 797
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 290
GlaI GCGC 2 cut(s) 32, 34
GluI GCNGC 1 cut(s) 240
HgaI GACGC 1 cut(s) 732
HhaI GCGC 2 cut(s) 33, 35
Hin1II CATG 2 cut(s) 180, 372
Hin6I GCGC 2 cut(s) 31, 33
HinP1I GCGC 2 cut(s) 31, 33
HinfI GANTC 1 cut(s) 710
HphI GGTGA 2 cut(s) 706, 842
Hpy166II GTNNAC 3 cut(s) 68, 276, 374
Hpy188I TCNGA 6 cut(s) 156, 455, 535, 600, 613, 817
Hpy188III TCNNGA 3 cut(s) 290, 333, 584
Hpy8I GTNNAC 3 cut(s) 68, 276, 374
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 6 cut(s) 200, 212, 239, 559, 644, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 641, 740, 749
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 180, 372
HspAI GCGC 2 cut(s) 31, 33
KpnI GGTACC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 156, 335, 754, 837
LmnI GCTCC 2 cut(s) 15, 215
LpnPI CCDG 7 cut(s) 198, 374, 414, 465, 504, 545, 789
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 3 cut(s) 189, 502, 694
MalI GATC 4 cut(s) 158, 337, 756, 839
MboI GATC 4 cut(s) 156, 335, 754, 837
MboII GAAGA 2 cut(s) 575, 681
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 6 cut(s) 73, 164, 195, 207, 422, 529
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 5 cut(s) 108, 154, 555, 598, 685
MroXI GAANNNNTTC 2 cut(s) 133, 408
MseI TTAA 3 cut(s) 72, 624, 663
MslI CAYNNNNRTG 1 cut(s) 175
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 4 cut(s) 314, 641, 740, 749
NdeI CATATG 1 cut(s) 726
NdeII GATC 4 cut(s) 156, 335, 754, 837
NlaIII CATG 2 cut(s) 180, 372
NlaIV GGNNCC 3 cut(s) 11, 60, 399
NmuCI GTSAC 1 cut(s) 694
NspI RCATGY 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 591
PauI GCGCGC 1 cut(s) 31
PciI ACATGT 1 cut(s) 368
PdmI GAANNNNTTC 2 cut(s) 133, 408
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PscI ACATGT 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 11, 60, 399
PspPI GGNCC 1 cut(s) 397
PspXI VCTCGAGB 1 cut(s) 591
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 335
PteI GCGCGC 1 cut(s) 31
RsaI GTAC 3 cut(s) 60, 375, 382
RsaNI GTAC 3 cut(s) 59, 374, 381
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 3 cut(s) 72, 624, 663
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 4 cut(s) 156, 335, 754, 837
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 1 cut(s) 719
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 397
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 6 cut(s) 73, 164, 195, 207, 422, 529
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 386
TaqI TCGA 5 cut(s) 159, 585, 592, 770, 840
TasI AATT 6 cut(s) 73, 164, 195, 207, 422, 529
TatI WGTACW 1 cut(s) 373
Tru1I TTAA 3 cut(s) 72, 624, 663
Tru9I TTAA 3 cut(s) 72, 624, 663
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 6 cut(s) 105, 106, 234, 309, 401, 835
TspGWI ACGGA 2 cut(s) 141, 328
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 2 cut(s) 164, 529
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 372
XhoI CTCGAG 1 cut(s) 591
XmnI GAANNNNTTC 2 cut(s) 133, 408
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.