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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G64550 |
| fragaria_vesca | FvH4_5g30651 FvH4_5g30651 FvH4_5g30651 FvH4_5g30651 |
| malus_domestica | MD08G1221900.v1.1 MD15G1414300.v1.1 |
| prunus_persica | Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 Prupe.1G559700_v2.0.a1 |
| pyrus_communis | pycom08g19260 pycom15g36850 |
| rosa_chinensis | RchiOBHm_Chr7g0225521 |
| rosa_laevigata | RLG00000001809 |
| rosa_multiflora | Rmu_sc0025113.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233720 |
| rosa_rugosa | Rorug07G0230500 Rorug07G0230600 |
| rosa_samantha | Rh7AG373200 Rh7BG365000 Rh7CG391300 Rh7DG375900 |
| rosa_wichuraiana | Rw7G031730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1687 |
| Acc16I | TGCGCA | 1 cut(s) | 367 |
| Acc36I | ACCTGC | 1 cut(s) | 1687 |
| AccB1I | GGYRCC | 1 cut(s) | 825 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 835 |
| AccI | GTMKAC | 1 cut(s) | 895 |
| AccIII | TCCGGA | 2 cut(s) | 405, 1837 |
| AciI | CCGC | 2 cut(s) | 741, 1048 |
| AcoI | YGGCCR | 3 cut(s) | 267, 1045, 1321 |
| AcsI | RAATTY | 3 cut(s) | 1466, 1741, 1833 |
| AcuI | CTGAAG | 6 cut(s) | 130, 441, 876, 1029, 1179, 1608 |
| AdeI | CACNNNGTG | 3 cut(s) | 215, 812, 1115 |
| AfaI | GTAC | 6 cut(s) | 192, 602, 922, 1093, 1242, 1327 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 39, 40, 332, 333, 835, 1063, 1522 |
| AflII | CTTAAG | 1 cut(s) | 100 |
| AgsI | TTSAA | 9 cut(s) | 10, 88, 309, 351, 1139, 1587, 1740, 1831, 1891 |
| AjnI | CCWGG | 5 cut(s) | 94, 119, 760, 1515, 1669 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 649, 681 |
| AluBI | AGCT | 7 cut(s) | 180, 347, 553, 571, 881, 1509, 1821 |
| AluI | AGCT | 7 cut(s) | 180, 347, 553, 571, 881, 1509, 1821 |
| Alw21I | GWGCWC | 3 cut(s) | 169, 706, 1393 |
| Alw26I | GTCTC | 2 cut(s) | 374, 1547 |
| Ama87I | CYCGRG | 1 cut(s) | 537 |
| Aor13HI | TCCGGA | 2 cut(s) | 405, 1837 |
| AoxI | GGCC | 5 cut(s) | 202, 267, 558, 1045, 1321 |
| ApaI | GGGCCC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 6 cut(s) | 180, 929, 993, 1302, 1496, 1506 |
| ApoI | RAATTY | 3 cut(s) | 1466, 1741, 1833 |
| AspLEI | GCGC | 1 cut(s) | 368 |
| AspS9I | GGNCC | 8 cut(s) | 202, 203, 323, 558, 1513, 1550, 1849, 1859 |
| AsuC2I | CCSGG | 1 cut(s) | 1554 |
| AsuHPI | GGTGA | 1 cut(s) | 80 |
| AvaI | CYCGRG | 1 cut(s) | 537 |
| AvaII | GGWCC | 5 cut(s) | 323, 1513, 1550, 1849, 1859 |
| AxyI | CCTNAGG | 1 cut(s) | 1764 |
| BaeGI | GKGCMC | 2 cut(s) | 206, 1318 |
| BalI | TGGCCA | 1 cut(s) | 269 |
| BanI | GGYRCC | 1 cut(s) | 825 |
| BanII | GRGCYC | 2 cut(s) | 206, 1084 |
| BauI | CACGAG | 2 cut(s) | 705, 933 |
| Bbv12I | GWGCWC | 3 cut(s) | 169, 706, 1393 |
| BbvI | GCAGC | 6 cut(s) | 167, 916, 980, 1289, 1483, 1518 |
| BccI | CCATC | 4 cut(s) | 32, 493, 1208, 1898 |
| BceAI | ACGGC | 2 cut(s) | 1035, 1308 |
| BciT130I | CCWGG | 5 cut(s) | 96, 121, 762, 1517, 1671 |
| BcnI | CCSGG | 1 cut(s) | 1554 |
| BcoDI | GTCTC | 2 cut(s) | 374, 1547 |
| BfaI | CTAG | 2 cut(s) | 660, 1661 |
| BfmI | CTRYAG | 6 cut(s) | 181, 591, 633, 645, 691, 1590 |
| BfrI | CTTAAG | 1 cut(s) | 100 |
| BfuAI | ACCTGC | 1 cut(s) | 1687 |
| BisI | GCNGC | 7 cut(s) | 181, 930, 994, 1048, 1303, 1497, 1507 |
| BlsI | GCNGC | 7 cut(s) | 182, 931, 995, 1049, 1304, 1498, 1508 |
| BmcAI | AGTACT | 3 cut(s) | 192, 602, 1093 |
| Bme1390I | CCNGG | 6 cut(s) | 96, 121, 762, 1517, 1554, 1671 |
| Bme18I | GGWCC | 5 cut(s) | 323, 1513, 1550, 1849, 1859 |
| BmeT110I | CYCGRG | 1 cut(s) | 537 |
| BmgT120I | GGNCC | 8 cut(s) | 202, 203, 323, 558, 1513, 1550, 1849, 1859 |
| BmiI | GGNNCC | 9 cut(s) | 204, 325, 410, 559, 827, 1081, 1552, 1707, 1850 |
| BmrFI | CCNGG | 6 cut(s) | 96, 121, 762, 1517, 1554, 1671 |
| BmsI | GCATC | 7 cut(s) | 302, 722, 740, 830, 1427, 1589, 1690 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1848, 1880 |
| BpmI | CTGGAG | 3 cut(s) | 351, 933, 1538 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 1 cut(s) | 1377 |
| BpuMI | CCSGG | 1 cut(s) | 1554 |
| BsaBI | GATNNNNATC | 1 cut(s) | 292 |
| BsaI | GGTCTC | 1 cut(s) | 1547 |
| BsaJI | CCNNGG | 9 cut(s) | 94, 519, 761, 924, 1084, 1149, 1318, 1564, 1852 |
| BsaWI | WCCGGW | 2 cut(s) | 405, 1837 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 324, 354 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 39, 40, 332, 333, 835, 1063, 1522 |
| Bse1I | ACTGG | 3 cut(s) | 162, 434, 1795 |
| Bse21I | CCTNAGG | 1 cut(s) | 1764 |
| Bse8I | GATNNNNATC | 1 cut(s) | 292 |
| BseAI | TCCGGA | 2 cut(s) | 405, 1837 |
| BseBI | CCWGG | 5 cut(s) | 96, 121, 762, 1517, 1671 |
| BseDI | CCNNGG | 9 cut(s) | 94, 519, 761, 924, 1084, 1149, 1318, 1564, 1852 |
| BseGI | GGATG | 3 cut(s) | 845, 923, 1730 |
| BseJI | GATNNNNATC | 1 cut(s) | 292 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 39, 40, 332, 333, 835, 1063, 1522 |
| BseMII | CTCAG | 7 cut(s) | 288, 296, 581, 612, 771, 1746, 1755 |
| BseNI | ACTGG | 3 cut(s) | 162, 434, 1795 |
| BseSI | GKGCMC | 2 cut(s) | 206, 1318 |
| BseXI | GCAGC | 6 cut(s) | 167, 916, 980, 1289, 1483, 1518 |
| BsgI | GTGCAG | 3 cut(s) | 915, 979, 1288 |
| BshFI | GGCC | 5 cut(s) | 204, 269, 560, 1047, 1323 |
| BshNI | GGYRCC | 1 cut(s) | 825 |
| BsiHKAI | GWGCWC | 3 cut(s) | 169, 706, 1393 |
| BsiHKCI | CYCGRG | 1 cut(s) | 537 |
| BsiSI | CCGG | 3 cut(s) | 406, 1554, 1838 |
| BslFI | GGGAC | 3 cut(s) | 309, 349, 1197 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 39, 40, 332, 333, 835, 1063, 1522 |
| BsmAI | GTCTC | 2 cut(s) | 374, 1547 |
| BsmFI | GGGAC | 3 cut(s) | 309, 349, 1197 |
| BsnI | GGCC | 5 cut(s) | 204, 269, 560, 1047, 1323 |
| Bso31I | GGTCTC | 1 cut(s) | 1547 |
| BsoBI | CYCGRG | 1 cut(s) | 537 |
| Bsp120I | GGGCCC | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 6 cut(s) | 169, 206, 706, 1084, 1318, 1393 |
| Bsp13I | TCCGGA | 2 cut(s) | 405, 1837 |
| Bsp1407I | TGTACA | 1 cut(s) | 1240 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| Bsp19I | CCATGG | 2 cut(s) | 1564, 1852 |
| BspACI | CCGC | 2 cut(s) | 741, 1048 |
| BspANI | GGCC | 5 cut(s) | 204, 269, 560, 1047, 1323 |
| BspCNI | CTCAG | 7 cut(s) | 289, 295, 580, 613, 772, 1747, 1756 |
| BspEI | TCCGGA | 2 cut(s) | 405, 1837 |
| BspLI | GGNNCC | 9 cut(s) | 204, 325, 410, 559, 827, 1081, 1552, 1707, 1850 |
| BspMAI | CTGCAG | 3 cut(s) | 185, 649, 1594 |
| BspMI | ACCTGC | 1 cut(s) | 1687 |
| BspQI | GCTCTTC | 1 cut(s) | 11 |
| BspT107I | GGYRCC | 1 cut(s) | 825 |
| BspTI | CTTAAG | 1 cut(s) | 100 |
| BspTNI | GGTCTC | 1 cut(s) | 1547 |
| BsrGI | TGTACA | 1 cut(s) | 1240 |
| BsrI | ACTGG | 3 cut(s) | 162, 434, 1795 |
| BssECI | CCNNGG | 9 cut(s) | 94, 519, 761, 924, 1084, 1149, 1318, 1564, 1852 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssSI | CACGAG | 2 cut(s) | 705, 933 |
| BssT1I | CCWWGG | 6 cut(s) | 519, 924, 1084, 1149, 1564, 1852 |
| Bst2BI | CACGAG | 2 cut(s) | 705, 933 |
| Bst2UI | CCWGG | 5 cut(s) | 96, 121, 762, 1517, 1671 |
| Bst4CI | ACNGT | 6 cut(s) | 224, 340, 355, 800, 1379, 1692 |
| Bst6I | CTCTTC | 5 cut(s) | 11, 163, 591, 815, 1764 |
| BstAFI | CTTAAG | 1 cut(s) | 100 |
| BstAUI | TGTACA | 1 cut(s) | 1240 |
| BstC8I | GCNNGC | 3 cut(s) | 627, 830, 1058 |
| BstDEI | CTNAG | 9 cut(s) | 282, 297, 567, 572, 621, 780, 1233, 1755, 1764 |
| BstDSI | CCRYGG | 3 cut(s) | 1318, 1564, 1852 |
| BstF5I | GGATG | 3 cut(s) | 845, 923, 1730 |
| BstHHI | GCGC | 1 cut(s) | 368 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 2 cut(s) | 374, 1547 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 710, 1053, 1079 |
| BstNI | CCWGG | 5 cut(s) | 96, 121, 762, 1517, 1671 |
| BstSCI | CCNGG | 6 cut(s) | 94, 119, 760, 1515, 1552, 1669 |
| BstSFI | CTRYAG | 6 cut(s) | 181, 591, 633, 645, 691, 1590 |
| BstSLI | GKGCMC | 2 cut(s) | 206, 1318 |
| BstV1I | GCAGC | 6 cut(s) | 167, 916, 980, 1289, 1483, 1518 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1764 |
| BsuRI | GGCC | 5 cut(s) | 204, 269, 560, 1047, 1323 |
| BtgI | CCRYGG | 3 cut(s) | 1318, 1564, 1852 |
| BtgZI | GCGATG | 1 cut(s) | 1375 |
| BtsCI | GGATG | 3 cut(s) | 845, 923, 1730 |
| BtsI | GCAGTG | 2 cut(s) | 270, 1810 |
| BtsIMutI | CAGTG | 4 cut(s) | 169, 270, 1639, 1810 |
| BveI | ACCTGC | 1 cut(s) | 1687 |
| Cac8I | GCNNGC | 3 cut(s) | 627, 830, 1058 |
| CfoI | GCGC | 1 cut(s) | 368 |
| Cfr13I | GGNCC | 8 cut(s) | 202, 203, 323, 558, 1513, 1550, 1849, 1859 |
| CsiI | ACCWGGT | 1 cut(s) | 119 |
| Csp6I | GTAC | 6 cut(s) | 191, 601, 921, 1092, 1241, 1326 |
| CviQI | GTAC | 6 cut(s) | 191, 601, 921, 1092, 1241, 1326 |
| DdeI | CTNAG | 9 cut(s) | 282, 297, 567, 572, 621, 780, 1233, 1755, 1764 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| DraIII | CACNNNGTG | 3 cut(s) | 215, 812, 1115 |
| EaeI | YGGCCR | 3 cut(s) | 267, 1045, 1321 |
| Eam1104I | CTCTTC | 5 cut(s) | 11, 163, 591, 815, 1764 |
| EarI | CTCTTC | 5 cut(s) | 11, 163, 591, 815, 1764 |
| EciI | GGCGGA | 1 cut(s) | 756 |
| Eco130I | CCWWGG | 6 cut(s) | 519, 924, 1084, 1149, 1564, 1852 |
| Eco24I | GRGCYC | 2 cut(s) | 206, 1084 |
| Eco31I | GGTCTC | 1 cut(s) | 1547 |
| Eco47I | GGWCC | 5 cut(s) | 323, 1513, 1550, 1849, 1859 |
| Eco57I | CTGAAG | 6 cut(s) | 130, 441, 876, 1029, 1179, 1608 |
| Eco81I | CCTNAGG | 1 cut(s) | 1764 |
| Eco88I | CYCGRG | 1 cut(s) | 537 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1859 |
| EcoRII | CCWGG | 5 cut(s) | 94, 119, 760, 1515, 1669 |
| EcoT14I | CCWWGG | 6 cut(s) | 519, 924, 1084, 1149, 1564, 1852 |
| EcoT38I | GRGCYC | 2 cut(s) | 206, 1084 |
| ErhI | CCWWGG | 6 cut(s) | 519, 924, 1084, 1149, 1564, 1852 |
| FaqI | GGGAC | 3 cut(s) | 309, 349, 1197 |
| FblI | GTMKAC | 1 cut(s) | 895 |
| Fnu4HI | GCNGC | 7 cut(s) | 181, 930, 994, 1048, 1303, 1497, 1507 |
| FokI | GGATG | 3 cut(s) | 852, 930, 1717 |
| FriOI | GRGCYC | 2 cut(s) | 206, 1084 |
| Fsp4HI | GCNGC | 7 cut(s) | 181, 930, 994, 1048, 1303, 1497, 1507 |
| FspBI | CTAG | 2 cut(s) | 660, 1661 |
| FspI | TGCGCA | 1 cut(s) | 367 |
| GlaI | GCGC | 1 cut(s) | 367 |
| GluI | GCNGC | 7 cut(s) | 181, 930, 994, 1048, 1303, 1497, 1507 |
| GsuI | CTGGAG | 3 cut(s) | 351, 933, 1538 |
| HaeIII | GGCC | 5 cut(s) | 204, 269, 560, 1047, 1323 |
| HapII | CCGG | 3 cut(s) | 406, 1554, 1838 |
| HhaI | GCGC | 1 cut(s) | 368 |
| Hin6I | GCGC | 1 cut(s) | 366 |
| HinP1I | GCGC | 1 cut(s) | 366 |
| HindIII | AAGCTT | 1 cut(s) | 345 |
| HinfI | GANTC | 4 cut(s) | 305, 430, 1629, 1655 |
| HpaII | CCGG | 3 cut(s) | 406, 1554, 1838 |
| HphI | GGTGA | 1 cut(s) | 80 |
| Hpy166II | GTNNAC | 2 cut(s) | 896, 1241 |
| Hpy188I | TCNGA | 7 cut(s) | 298, 504, 622, 669, 1645, 1756, 1913 |
| Hpy188III | TCNNGA | 8 cut(s) | 170, 330, 375, 406, 427, 912, 1626, 1838 |
| Hpy8I | GTNNAC | 2 cut(s) | 896, 1241 |
| Hpy99I | CGWCG | 1 cut(s) | 1696 |
| HpyAV | CCTTC | 7 cut(s) | 440, 594, 851, 983, 1004, 1154, 1809 |
| HpyCH4III | ACNGT | 6 cut(s) | 224, 340, 355, 800, 1379, 1692 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 710, 1053, 1079 |
| HpyF3I | CTNAG | 9 cut(s) | 282, 297, 567, 572, 621, 780, 1233, 1755, 1764 |
| HspAI | GCGC | 1 cut(s) | 366 |
| Kpn2I | TCCGGA | 2 cut(s) | 405, 1837 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LguI | GCTCTTC | 1 cut(s) | 11 |
| LmnI | GCTCC | 7 cut(s) | 172, 505, 550, 701, 1079, 1800, 1818 |
| Lsp1109I | GCAGC | 6 cut(s) | 167, 916, 980, 1289, 1483, 1518 |
| LweI | GCATC | 7 cut(s) | 302, 722, 740, 830, 1427, 1589, 1690 |
| MabI | ACCWGGT | 1 cut(s) | 119 |
| MaeI | CTAG | 2 cut(s) | 660, 1661 |
| MaeIII | GTNAC | 4 cut(s) | 68, 247, 1805, 1869 |
| MalI | GATC | 1 cut(s) | 47 |
| MboI | GATC | 1 cut(s) | 45 |
| MhlI | GDGCHC | 6 cut(s) | 169, 206, 706, 1084, 1318, 1393 |
| MlsI | TGGCCA | 1 cut(s) | 269 |
| MluCI | AATT | 7 cut(s) | 238, 369, 1255, 1466, 1741, 1833, 1885 |
| MluNI | TGGCCA | 1 cut(s) | 269 |
| MmeI | TCCRAC | 2 cut(s) | 340, 1668 |
| Mox20I | TGGCCA | 1 cut(s) | 269 |
| MroI | TCCGGA | 2 cut(s) | 405, 1837 |
| MscI | TGGCCA | 1 cut(s) | 269 |
| MseI | TTAA | 2 cut(s) | 101, 390 |
| MslI | CAYNNNNRTG | 5 cut(s) | 888, 1041, 1116, 1174, 1275 |
| Msp20I | TGGCCA | 1 cut(s) | 269 |
| MspA1I | CMGCKG | 1 cut(s) | 180 |
| MspCI | CTTAAG | 1 cut(s) | 100 |
| MspI | CCGG | 3 cut(s) | 406, 1554, 1838 |
| MspR9I | CCNGG | 6 cut(s) | 96, 121, 762, 1517, 1554, 1671 |
| MvaI | CCWGG | 5 cut(s) | 96, 121, 762, 1517, 1671 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 710, 1053, 1079 |
| NciI | CCSGG | 1 cut(s) | 1554 |
| NcoI | CCATGG | 2 cut(s) | 1564, 1852 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIV | GGNNCC | 9 cut(s) | 204, 325, 410, 559, 827, 1081, 1552, 1707, 1850 |
| NmeAIII | GCCGAG | 1 cut(s) | 584 |
| NmuCI | GTSAC | 3 cut(s) | 68, 1805, 1869 |
| NsbI | TGCGCA | 1 cut(s) | 367 |
| PaqCI | CACCTGC | 1 cut(s) | 1687 |
| PciSI | GCTCTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 4 cut(s) | 305, 430, 1629, 1655 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 835 |
| PfoI | TCCNGGA | 2 cut(s) | 1515, 1669 |
| PkrI | GCNGC | 7 cut(s) | 182, 931, 995, 1049, 1304, 1498, 1508 |
| PpuMI | RGGWCCY | 1 cut(s) | 1859 |
| Psp5II | RGGWCCY | 1 cut(s) | 1859 |
| Psp6I | CCWGG | 5 cut(s) | 94, 119, 760, 1515, 1669 |
| PspGI | CCWGG | 5 cut(s) | 94, 119, 760, 1515, 1669 |
| PspN4I | GGNNCC | 9 cut(s) | 204, 325, 410, 559, 827, 1081, 1552, 1707, 1850 |
| PspOMI | GGGCCC | 1 cut(s) | 202 |
| PspPI | GGNCC | 8 cut(s) | 202, 203, 323, 558, 1513, 1550, 1849, 1859 |
| PspPPI | RGGWCCY | 1 cut(s) | 1859 |
| PstI | CTGCAG | 3 cut(s) | 185, 649, 1594 |
| PvuII | CAGCTG | 1 cut(s) | 180 |
| RsaI | GTAC | 6 cut(s) | 192, 602, 922, 1093, 1242, 1327 |
| RsaNI | GTAC | 6 cut(s) | 191, 601, 921, 1092, 1241, 1326 |
| RseI | CAYNNNNRTG | 5 cut(s) | 888, 1041, 1116, 1174, 1275 |
| SapI | GCTCTTC | 1 cut(s) | 11 |
| SaqAI | TTAA | 2 cut(s) | 101, 390 |
| SatI | GCNGC | 7 cut(s) | 181, 930, 994, 1048, 1303, 1497, 1507 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| Sau96I | GGNCC | 8 cut(s) | 202, 203, 323, 558, 1513, 1550, 1849, 1859 |
| ScaI | AGTACT | 3 cut(s) | 192, 602, 1093 |
| ScrFI | CCNGG | 6 cut(s) | 96, 121, 762, 1517, 1554, 1671 |
| SduI | GDGCHC | 6 cut(s) | 169, 206, 706, 1084, 1318, 1393 |
| SexAI | ACCWGGT | 1 cut(s) | 119 |
| SfaNI | GCATC | 7 cut(s) | 302, 722, 740, 830, 1427, 1589, 1690 |
| SfcI | CTRYAG | 6 cut(s) | 181, 591, 633, 645, 691, 1590 |
| SinI | GGWCC | 5 cut(s) | 323, 1513, 1550, 1849, 1859 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 888, 1041, 1116, 1174, 1275 |
| SmlI | CTYRAG | 2 cut(s) | 100, 1392 |
| SmoI | CTYRAG | 2 cut(s) | 100, 1392 |
| Sse9I | AATT | 7 cut(s) | 238, 369, 1255, 1466, 1741, 1833, 1885 |
| SsiI | CCGC | 2 cut(s) | 741, 1048 |
| SspMI | CTAG | 2 cut(s) | 660, 1661 |
| StyD4I | CCNGG | 6 cut(s) | 94, 119, 760, 1515, 1552, 1669 |
| StyI | CCWWGG | 6 cut(s) | 519, 924, 1084, 1149, 1564, 1852 |
| TaaI | ACNGT | 6 cut(s) | 224, 340, 355, 800, 1379, 1692 |
| TaqI | TCGA | 1 cut(s) | 428 |
| TasI | AATT | 7 cut(s) | 238, 369, 1255, 1466, 1741, 1833, 1885 |
| TatI | WGTACW | 4 cut(s) | 190, 600, 1091, 1240 |
| TauI | GCSGC | 1 cut(s) | 1050 |
| TfiI | GAWTC | 4 cut(s) | 305, 430, 1629, 1655 |
| Tru1I | TTAA | 2 cut(s) | 101, 390 |
| Tru9I | TTAA | 2 cut(s) | 101, 390 |
| TscAI | CASTG | 4 cut(s) | 169, 277, 1639, 1810 |
| TseFI | GTSAC | 3 cut(s) | 68, 1805, 1869 |
| TseI | GCWGC | 6 cut(s) | 180, 929, 993, 1302, 1496, 1506 |
| Tsp45I | GTSAC | 3 cut(s) | 68, 1805, 1869 |
| TspDTI | ATGAA | 4 cut(s) | 459, 594, 1544, 1733 |
| TspRI | CASTG | 4 cut(s) | 169, 277, 1639, 1810 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 835 |
| Vha464I | CTTAAG | 1 cut(s) | 100 |
| VpaK11BI | GGWCC | 5 cut(s) | 323, 1513, 1550, 1849, 1859 |
| XapI | RAATTY | 3 cut(s) | 1466, 1741, 1833 |
| XmiI | GTMKAC | 1 cut(s) | 895 |
| XspI | CTAG | 2 cut(s) | 660, 1661 |
| ZrmI | AGTACT | 3 cut(s) | 192, 602, 1093 |