Rmu_sc0028537.1_g000001

ATPases associated with a variety of cellular activities

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028537.1
OG0014073
Physical Location & Seq
Forward (+)
1622 .. 2620
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028537.1_g000001.1.cds

Sequence Viewer

Length: 999 bp
atgaatgaagaacaagcatcaaaatctcctcctcaactagacaccatggtctccaatggcctcaccatcaaaatctcctcaaacacttcaaccaccaaaacaacaacaggtaaagacagttccttgccttctccaaatattcaatcctcacctatttgctctccttctctagtctctccaccttcctcagcatttgtctcagctcttcagtccccatatatttctccgagagtcttaagcccaaaaccccaagatagcccaactcaccaacaaccgtcaccacccatctcctacactcactcagatgacatcccaagcagttcatacacacccccatcagaccagtatgagtattcagataatgacccaatgaagctcaagtttgattcttcagcccctcctagaatttcgttttcctttccggtcccaagaatttcctttgccaaaggagggtctgtttcccctgctcgaaactccaacgccaagctgagaagctgtgacgtctacattgggttccatggccaaaacccgaacctggttcgcttctgcaaatggcttaaatcagagcttgagcttcagggcattgcttgttttgttgctgacagagctaagtactcagacactcagagccaggagattgctgacagagttatctgctctgttacttatggagttgtggttgttaccagctcaagttttcttaaccatttgagcctggaggaggtgaggttctttgcccagaagaagaatctgtttcctgtgtttttcgacactgggccgggtgagattatgggtctgcttaattacaattcgattgataaggagcgtaaggaggccattgatgggttgatgaagtgtagtgagttcaagctggaggccaatgagggtaactggagaaccattgtgtcgaaagccgcgggggttttgagggcaaagcttgggaggaagagtgtgtctttgactgagcttgaggctgttgatgagctgccttttccgagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

333

Amino Acids

36.49

Weight (kDa)

7.57

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56220 AT5G56220
fragaria_vesca FvH4_3g41580
malus_domestica MD11G1046300.v1.1
prunus_persica Prupe.6G035600_v2.0.a1
pyrus_communis pycom11g03770
rosa_chinensis RchiOBHm_Chr5g0074571
rosa_laevigata RLG00000036488
rosa_multiflora Rmu_co8486051.1_g000001 Rmu_sc0028537.1_g000001
rosa_roxburghii Rroxscaffold_1G00006990
rosa_rugosa Rorug05G0432800
rosa_samantha Rh5AG489900 Rh5BG510800 Rh5CG534600 Rh5DG523300
rosa_wichuraiana Rw5G045420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AatII GACGTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 917
AciI CCGC 2 cut(s) 915, 917
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 2 cut(s) 405, 432
AcuI CTGAAG 3 cut(s) 191, 375, 560
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 4 cut(s) 450, 535, 721, 843
AflII CTTAAG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 90, 143, 868
AjnI CCWGG 3 cut(s) 534, 630, 714
AloI GAACNNNNNNTCC 2 cut(s) 713, 745
Alw26I GTCTC 3 cut(s) 55, 178, 202
AoxI GGCC 5 cut(s) 58, 520, 776, 834, 876
ApeKI GCWGC 1 cut(s) 985
ApoI RAATTY 2 cut(s) 405, 432
AspS9I GGNCC 2 cut(s) 424, 776
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 6 cut(s) 55, 141, 257, 270, 736, 794
AvaII GGWCC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 972
BccI CCATC 4 cut(s) 74, 293, 343, 836
BciT130I CCWGG 3 cut(s) 536, 632, 716
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 55, 178, 202
BfaI CTAG 3 cut(s) 38, 170, 402
BfrI CTTAAG 1 cut(s) 235
BisI GCNGC 2 cut(s) 915, 986
BlsI GCNGC 2 cut(s) 916, 987
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 4 cut(s) 536, 632, 716, 780
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 424, 776
BmiI GGNNCC 2 cut(s) 426, 515
BmrFI CCNGG 4 cut(s) 536, 632, 716, 780
BmrI ACTGGG 1 cut(s) 783
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 783
BpmI CTGGAG 3 cut(s) 737, 893, 913
Bpu10I CCTNAGC 1 cut(s) 187
BpuEI CTTGAG 4 cut(s) 362, 590, 676, 989
BpuMI CCSGG 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 45, 517, 915, 995
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 8 cut(s) 441, 471, 663, 693, 713, 743, 934, 964
Bsc4I CCNNNNNNNGG 4 cut(s) 450, 535, 721, 843
Bse1I ACTGG 3 cut(s) 343, 778, 896
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 3 cut(s) 536, 632, 716
BseDI CCNNGG 4 cut(s) 45, 517, 915, 995
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 450, 535, 721, 843
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 7 cut(s) 201, 213, 315, 479, 630, 638, 954
BseNI ACTGG 3 cut(s) 343, 778, 896
BseRI GAGGAG 4 cut(s) 18, 21, 67, 734
BseXI GCAGC 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 917
BshFI GGCC 5 cut(s) 60, 522, 778, 836, 878
BsiSI CCGG 2 cut(s) 422, 779
BslFI GGGAC 2 cut(s) 196, 410
BslI CCNNNNNNNGG 4 cut(s) 450, 535, 721, 843
BsmAI GTCTC 3 cut(s) 55, 178, 202
BsmFI GGGAC 2 cut(s) 196, 410
BsnI GGCC 5 cut(s) 60, 522, 778, 836, 878
Bso31I GGTCTC 1 cut(s) 55
Bsp19I CCATGG 2 cut(s) 45, 517
BspACI CCGC 2 cut(s) 915, 917
BspANI GGCC 5 cut(s) 60, 522, 778, 836, 878
BspCNI CTCAG 7 cut(s) 200, 212, 314, 480, 629, 637, 955
BspFNI CGCG 1 cut(s) 917
BspLI GGNNCC 2 cut(s) 426, 515
BspQI GCTCTTC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 3 cut(s) 343, 778, 896
BssECI CCNNGG 4 cut(s) 45, 517, 915, 995
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 45, 517
Bst2UI CCWGG 3 cut(s) 536, 632, 716
Bst4CI ACNGT 2 cut(s) 119, 276
Bst6I CTCTTC 2 cut(s) 210, 941
BstACI GRCGYC 1 cut(s) 501
BstAFI CTTAAG 1 cut(s) 235
BstDEI CTNAG 8 cut(s) 187, 199, 301, 488, 609, 616, 624, 963
BstDSI CCRYGG 3 cut(s) 45, 517, 915
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 917
BstMAI GTCTC 3 cut(s) 55, 178, 202
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 3 cut(s) 536, 632, 716
BstSCI CCNGG 4 cut(s) 534, 630, 714, 778
BstUI CGCG 1 cut(s) 917
BstV1I GCAGC 1 cut(s) 972
BsuRI GGCC 5 cut(s) 60, 522, 778, 836, 878
BtgI CCRYGG 3 cut(s) 45, 517, 915
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 424, 776
Cfr42I CCGCGG 1 cut(s) 918
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 1 cut(s) 613
CviAII CATG 2 cut(s) 46, 518
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 8 cut(s) 187, 199, 301, 488, 609, 616, 624, 963
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 2 cut(s) 210, 941
EarI CTCTTC 2 cut(s) 210, 941
Eco130I CCWWGG 2 cut(s) 45, 517
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 3 cut(s) 191, 375, 560
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 534, 630, 714
EcoT14I CCWWGG 2 cut(s) 45, 517
ErhI CCWWGG 2 cut(s) 45, 517
FaeI CATG 2 cut(s) 49, 521
FaiI YATR 8 cut(s) 47, 217, 219, 325, 348, 519, 669, 791
FaqI GGGAC 2 cut(s) 196, 410
FatI CATG 2 cut(s) 45, 517
FauI CCCGC 1 cut(s) 910
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 915, 986
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 915, 986
FspBI CTAG 3 cut(s) 38, 170, 402
GluI GCNGC 2 cut(s) 915, 986
GsuI CTGGAG 3 cut(s) 737, 893, 913
HaeIII GGCC 5 cut(s) 60, 522, 778, 836, 878
HapII CCGG 2 cut(s) 422, 779
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 2 cut(s) 49, 521
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 3 cut(s) 231, 386, 748
HpaII CCGG 2 cut(s) 422, 779
HphI GGTGA 6 cut(s) 55, 141, 257, 270, 736, 794
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 8 cut(s) 228, 304, 340, 358, 565, 619, 627, 996
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 3 cut(s) 138, 174, 192
HpyCH4III ACNGT 2 cut(s) 119, 276
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 1 cut(s) 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 8 cut(s) 187, 199, 301, 488, 609, 616, 624, 963
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 2 cut(s) 49, 521
KspI CCGCGG 1 cut(s) 918
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 1 cut(s) 972
LweI GCATC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 534
MaeI CTAG 3 cut(s) 38, 170, 402
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 5 cut(s) 276, 497, 661, 682, 887
MboII GAAGA 6 cut(s) 20, 197, 381, 754, 757, 958
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 4 cut(s) 405, 432, 802, 808
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 501
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 4 cut(s) 236, 558, 702, 801
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 917
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 2 cut(s) 422, 779
MspR9I CCNGG 4 cut(s) 536, 632, 716, 780
MvaI CCWGG 3 cut(s) 536, 632, 716
MvnI CGCG 1 cut(s) 917
MwoI GCNNNNNNNGC 1 cut(s) 605
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 2 cut(s) 45, 517
NlaIII CATG 2 cut(s) 49, 521
NlaIV GGNNCC 2 cut(s) 426, 515
NmuCI GTSAC 2 cut(s) 276, 497
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 386, 748
PkrI GCNGC 2 cut(s) 916, 987
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp6I CCWGG 3 cut(s) 534, 630, 714
PspGI CCWGG 3 cut(s) 534, 630, 714
PspN4I GGNNCC 2 cut(s) 426, 515
PspPI GGNCC 2 cut(s) 424, 776
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 1 cut(s) 303
SacII CCGCGG 1 cut(s) 918
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 4 cut(s) 236, 558, 702, 801
SatI GCNGC 2 cut(s) 915, 986
Sau96I GGNCC 2 cut(s) 424, 776
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 4 cut(s) 536, 632, 716, 780
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 1 cut(s) 26
Sfr303I CCGCGG 1 cut(s) 918
SgrBI CCGCGG 1 cut(s) 918
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 5 cut(s) 235, 377, 569, 691, 968
SmoI CTYRAG 5 cut(s) 235, 377, 569, 691, 968
Sse9I AATT 4 cut(s) 405, 432, 802, 808
SsiI CCGC 2 cut(s) 915, 917
SspI AATATT 1 cut(s) 139
SspMI CTAG 3 cut(s) 38, 170, 402
StyD4I CCNGG 4 cut(s) 534, 630, 714, 778
StyI CCWWGG 2 cut(s) 45, 517
TaaI ACNGT 2 cut(s) 119, 276
TaiI ACGT 1 cut(s) 504
TaqI TCGA 4 cut(s) 469, 768, 812, 908
TasI AATT 4 cut(s) 405, 432, 802, 808
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 2 cut(s) 386, 748
Tru1I TTAA 4 cut(s) 236, 558, 702, 801
Tru9I TTAA 4 cut(s) 236, 558, 702, 801
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 2 cut(s) 276, 497
TseI GCWGC 1 cut(s) 985
Tsp45I GTSAC 2 cut(s) 276, 497
TspDTI ATGAA 5 cut(s) 17, 21, 312, 386, 866
TspRI CASTG 1 cut(s) 778
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 424
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 2 cut(s) 405, 432
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 3 cut(s) 38, 170, 402
ZraI GACGTC 1 cut(s) 502
ZrmI AGTACT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.