ATPases associated with a variety of cellular activities
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56220 AT5G56220 |
| fragaria_vesca | FvH4_3g41580 |
| malus_domestica | MD11G1046300.v1.1 |
| prunus_persica | Prupe.6G035600_v2.0.a1 |
| pyrus_communis | pycom11g03770 |
| rosa_chinensis | RchiOBHm_Chr5g0074571 |
| rosa_laevigata | RLG00000036488 |
| rosa_multiflora | Rmu_co8486051.1_g000001 Rmu_sc0028537.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00006990 |
| rosa_rugosa | Rorug05G0432800 |
| rosa_samantha | Rh5AG489900 Rh5BG510800 Rh5CG534600 Rh5DG523300 |
| rosa_wichuraiana | Rw5G045420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 47 |
| AatII | GACGTC | 1 cut(s) | 504 |
| Acc65I | GGTACC | 1 cut(s) | 1386 |
| AccB1I | GGYRCC | 3 cut(s) | 1386, 2084, 2646 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2695 |
| AccI | GTMKAC | 1 cut(s) | 504 |
| AccII | CGCG | 1 cut(s) | 2275 |
| AccIII | TCCGGA | 1 cut(s) | 1483 |
| AciI | CCGC | 5 cut(s) | 915, 1727, 2213, 2775, 2790 |
| AclWI | GGATC | 5 cut(s) | 1475, 1500, 1638, 1639, 1945 |
| AcoI | YGGCCR | 1 cut(s) | 520 |
| AcsI | RAATTY | 5 cut(s) | 405, 432, 1243, 1456, 1705 |
| AcuI | CTGAAG | 5 cut(s) | 191, 375, 560, 2253, 2750 |
| AcyI | GRCGYC | 1 cut(s) | 501 |
| AfaI | GTAC | 8 cut(s) | 614, 1172, 1388, 1784, 1976, 2504, 2601, 2705 |
| AflII | CTTAAG | 2 cut(s) | 235, 1954 |
| AflIII | ACRYGT | 1 cut(s) | 2706 |
| AgeI | ACCGGT | 1 cut(s) | 1735 |
| AgsI | TTSAA | 6 cut(s) | 143, 868, 1252, 1540, 1907, 2455 |
| AhlI | ACTAGT | 1 cut(s) | 1682 |
| AjiI | CACGTC | 1 cut(s) | 2719 |
| AjnI | CCWGG | 5 cut(s) | 534, 630, 714, 1330, 2087 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2092, 2124, 2276, 2308 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 713, 745 |
| Alw26I | GTCTC | 8 cut(s) | 55, 178, 202, 1455, 1595, 2632, 2741, 2867 |
| AlwI | GGATC | 5 cut(s) | 1475, 1500, 1638, 1639, 1945 |
| Ama87I | CYCGRG | 2 cut(s) | 2065, 2603 |
| Aor13HI | TCCGGA | 1 cut(s) | 1483 |
| AoxI | GGCC | 7 cut(s) | 58, 520, 776, 834, 876, 2244, 2538 |
| ApeKI | GCWGC | 7 cut(s) | 985, 1046, 1720, 2132, 2360, 2677, 2864 |
| ApoI | RAATTY | 5 cut(s) | 405, 432, 1243, 1456, 1705 |
| AseI | ATTAAT | 1 cut(s) | 1176 |
| AsiGI | ACCGGT | 1 cut(s) | 1735 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2291, 2621 |
| Asp718I | GGTACC | 1 cut(s) | 1386 |
| AspLEI | GCGC | 1 cut(s) | 2275 |
| AspS9I | GGNCC | 5 cut(s) | 424, 776, 2245, 2416, 2538 |
| AsuC2I | CCSGG | 2 cut(s) | 780, 919 |
| AvaI | CYCGRG | 2 cut(s) | 2065, 2603 |
| AvaII | GGWCC | 2 cut(s) | 424, 2416 |
| BalI | TGGCCA | 1 cut(s) | 522 |
| BanI | GGYRCC | 3 cut(s) | 1386, 2084, 2646 |
| BbsI | GAAGAC | 3 cut(s) | 1349, 2244, 2519 |
| BbvCI | CCTCAGC | 1 cut(s) | 187 |
| BbvI | GCAGC | 7 cut(s) | 972, 1033, 1732, 2144, 2372, 2664, 2876 |
| BccI | CCATC | 9 cut(s) | 74, 293, 343, 836, 1027, 1180, 1387, 1795, 2427 |
| BceAI | ACGGC | 2 cut(s) | 2009, 2668 |
| BciT130I | CCWGG | 5 cut(s) | 536, 632, 716, 1332, 2089 |
| BclI | TGATCA | 1 cut(s) | 1674 |
| BcnI | CCSGG | 2 cut(s) | 780, 919 |
| BcoDI | GTCTC | 8 cut(s) | 55, 178, 202, 1455, 1595, 2632, 2741, 2867 |
| BcuI | ACTAGT | 1 cut(s) | 1682 |
| BfmI | CTRYAG | 1 cut(s) | 2130 |
| BfrI | CTTAAG | 2 cut(s) | 235, 1954 |
| BisI | GCNGC | 8 cut(s) | 915, 986, 1047, 1721, 2133, 2361, 2678, 2865 |
| BlpI | GCTNAGC | 1 cut(s) | 1838 |
| BlsI | GCNGC | 8 cut(s) | 916, 987, 1048, 1722, 2134, 2362, 2679, 2866 |
| BmcAI | AGTACT | 2 cut(s) | 614, 1976 |
| Bme1390I | CCNGG | 7 cut(s) | 536, 632, 716, 780, 919, 1332, 2089 |
| Bme18I | GGWCC | 2 cut(s) | 424, 2416 |
| BmeT110I | CYCGRG | 2 cut(s) | 2065, 2603 |
| BmgBI | CACGTC | 1 cut(s) | 2719 |
| BmgT120I | GGNCC | 5 cut(s) | 424, 776, 2245, 2416, 2538 |
| BmiI | GGNNCC | 6 cut(s) | 426, 515, 1329, 1388, 2086, 2648 |
| BmrFI | CCNGG | 7 cut(s) | 536, 632, 716, 780, 919, 1332, 2089 |
| BmrI | ACTGGG | 1 cut(s) | 783 |
| BmsI | GCATC | 5 cut(s) | 26, 1735, 1968, 2549, 2823 |
| BmuI | ACTGGG | 1 cut(s) | 783 |
| BpiI | GAAGAC | 3 cut(s) | 1349, 2244, 2519 |
| BpmI | CTGGAG | 5 cut(s) | 737, 893, 913, 2539, 2765 |
| Bpu10I | CCTNAGC | 3 cut(s) | 187, 2165, 2860 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1838 |
| BpuEI | CTTGAG | 7 cut(s) | 362, 590, 676, 989, 1619, 2465, 2853 |
| BpuMI | CCSGG | 2 cut(s) | 780, 919 |
| BsaAI | YACGTR | 1 cut(s) | 2707 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1037 |
| BsaHI | GRCGYC | 1 cut(s) | 501 |
| BsaI | GGTCTC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 9 cut(s) | 45, 517, 918, 995, 1649, 1695, 1749, 2364, 2650 |
| BsaWI | WCCGGW | 4 cut(s) | 421, 1389, 1483, 1735 |
| Bse118I | RCCGGY | 2 cut(s) | 1735, 2160 |
| Bse1I | ACTGG | 5 cut(s) | 343, 778, 896, 2274, 2306 |
| Bse3DI | GCAATG | 3 cut(s) | 582, 1722, 2738 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1037 |
| BseAI | TCCGGA | 1 cut(s) | 1483 |
| BseBI | CCWGG | 5 cut(s) | 536, 632, 716, 1332, 2089 |
| BseDI | CCNNGG | 9 cut(s) | 45, 517, 918, 995, 1649, 1695, 1749, 2364, 2650 |
| BseGI | GGATG | 5 cut(s) | 309, 1398, 1474, 2314, 2704 |
| BseJI | GATNNNNATC | 1 cut(s) | 1037 |
| BseMI | GCAATG | 3 cut(s) | 582, 1722, 2738 |
| BseNI | ACTGG | 5 cut(s) | 343, 778, 896, 2274, 2306 |
| BseRI | GAGGAG | 7 cut(s) | 18, 21, 67, 734, 1532, 1808, 2457 |
| BseXI | GCAGC | 7 cut(s) | 972, 1033, 1732, 2144, 2372, 2664, 2876 |
| BseYI | CCCAGC | 1 cut(s) | 2836 |
| BsgI | GTGCAG | 2 cut(s) | 2575, 2824 |
| Bsh1236I | CGCG | 1 cut(s) | 2275 |
| BshFI | GGCC | 7 cut(s) | 60, 522, 778, 836, 878, 2246, 2540 |
| BshNI | GGYRCC | 3 cut(s) | 1386, 2084, 2646 |
| BshTI | ACCGGT | 1 cut(s) | 1735 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2065, 2603 |
| BsiSI | CCGG | 7 cut(s) | 422, 779, 918, 1390, 1484, 1736, 2161 |
| BslFI | GGGAC | 3 cut(s) | 196, 410, 1580 |
| BsmAI | GTCTC | 8 cut(s) | 55, 178, 202, 1455, 1595, 2632, 2741, 2867 |
| BsmBI | CGTCTC | 2 cut(s) | 2632, 2741 |
| BsmFI | GGGAC | 3 cut(s) | 196, 410, 1580 |
| BsmI | GAATGC | 4 cut(s) | 1091, 1535, 2076, 2435 |
| BsnI | GGCC | 7 cut(s) | 60, 522, 778, 836, 878, 2246, 2540 |
| Bso31I | GGTCTC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 2 cut(s) | 2065, 2603 |
| Bsp13I | TCCGGA | 1 cut(s) | 1483 |
| Bsp1407I | TGTACA | 1 cut(s) | 2502 |
| Bsp143I | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1838 |
| Bsp19I | CCATGG | 3 cut(s) | 45, 517, 1749 |
| BspACI | CCGC | 5 cut(s) | 915, 1727, 2213, 2775, 2790 |
| BspANI | GGCC | 7 cut(s) | 60, 522, 778, 836, 878, 2246, 2540 |
| BspEI | TCCGGA | 1 cut(s) | 1483 |
| BspFNI | CGCG | 1 cut(s) | 2275 |
| BspLI | GGNNCC | 6 cut(s) | 426, 515, 1329, 1388, 2086, 2648 |
| BspMAI | CTGCAG | 1 cut(s) | 2134 |
| BspPI | GGATC | 5 cut(s) | 1475, 1500, 1638, 1639, 1945 |
| BspQI | GCTCTTC | 3 cut(s) | 210, 1962, 2790 |
| BspT107I | GGYRCC | 3 cut(s) | 1386, 2084, 2646 |
| BspTI | CTTAAG | 2 cut(s) | 235, 1954 |
| BspTNI | GGTCTC | 1 cut(s) | 55 |
| BsrDI | GCAATG | 3 cut(s) | 582, 1722, 2738 |
| BsrFI | RCCGGY | 2 cut(s) | 1735, 2160 |
| BsrGI | TGTACA | 1 cut(s) | 2502 |
| BsrI | ACTGG | 5 cut(s) | 343, 778, 896, 2274, 2306 |
| BssAI | RCCGGY | 2 cut(s) | 1735, 2160 |
| BssECI | CCNNGG | 9 cut(s) | 45, 517, 918, 995, 1649, 1695, 1749, 2364, 2650 |
| BssMI | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| BssNI | GRCGYC | 1 cut(s) | 501 |
| BssT1I | CCWWGG | 6 cut(s) | 45, 517, 1649, 1695, 1749, 2364 |
| Bst2UI | CCWGG | 5 cut(s) | 536, 632, 716, 1332, 2089 |
| Bst4CI | ACNGT | 5 cut(s) | 119, 1289, 1386, 2374, 2830 |
| Bst6I | CTCTTC | 6 cut(s) | 210, 941, 1544, 1962, 2124, 2790 |
| BstACI | GRCGYC | 1 cut(s) | 501 |
| BstAFI | CTTAAG | 2 cut(s) | 235, 1954 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1895, 2811 |
| BstAUI | TGTACA | 1 cut(s) | 2502 |
| BstBAI | YACGTR | 1 cut(s) | 2707 |
| BstC8I | GCNNGC | 5 cut(s) | 1353, 2148, 2162, 2657, 2777 |
| BstDSI | CCRYGG | 4 cut(s) | 45, 517, 1749, 2650 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 719 |
| BstF5I | GGATG | 5 cut(s) | 309, 1398, 1474, 2314, 2704 |
| BstFNI | CGCG | 1 cut(s) | 2275 |
| BstHHI | GCGC | 1 cut(s) | 2275 |
| BstKTI | GATC | 8 cut(s) | 1259, 1314, 1483, 1495, 1633, 1647, 1677, 1940 |
| BstMAI | GTCTC | 8 cut(s) | 55, 178, 202, 1455, 1595, 2632, 2741, 2867 |
| BstMBI | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| BstNI | CCWGG | 5 cut(s) | 536, 632, 716, 1332, 2089 |
| BstNSI | RCATGY | 1 cut(s) | 1573 |
| BstSCI | CCNGG | 7 cut(s) | 534, 630, 714, 778, 917, 1330, 2087 |
| BstSFI | CTRYAG | 1 cut(s) | 2130 |
| BstUI | CGCG | 1 cut(s) | 2275 |
| BstV1I | GCAGC | 7 cut(s) | 972, 1033, 1732, 2144, 2372, 2664, 2876 |
| BstV2I | GAAGAC | 3 cut(s) | 1349, 2244, 2519 |
| BstX2I | RGATCY | 1 cut(s) | 1630 |
| BstYI | RGATCY | 1 cut(s) | 1630 |
| BsuRI | GGCC | 7 cut(s) | 60, 522, 778, 836, 878, 2246, 2540 |
| BtgI | CCRYGG | 4 cut(s) | 45, 517, 1749, 2650 |
| BtrI | CACGTC | 1 cut(s) | 2719 |
| BtsCI | GGATG | 5 cut(s) | 309, 1398, 1474, 2314, 2704 |
| BtsI | GCAGTG | 3 cut(s) | 1312, 1865, 2127 |
| BtsIMutI | CAGTG | 5 cut(s) | 771, 1312, 1865, 2127, 2835 |
| Cac8I | GCNNGC | 5 cut(s) | 1353, 2148, 2162, 2657, 2777 |
| CfoI | GCGC | 1 cut(s) | 2275 |
| Cfr10I | RCCGGY | 2 cut(s) | 1735, 2160 |
| Cfr13I | GGNCC | 5 cut(s) | 424, 776, 2245, 2416, 2538 |
| CseI | GACGC | 1 cut(s) | 1721 |
| CsiI | ACCWGGT | 1 cut(s) | 534 |
| Csp6I | GTAC | 8 cut(s) | 613, 1171, 1387, 1783, 1975, 2503, 2600, 2704 |
| CspAI | ACCGGT | 1 cut(s) | 1735 |
| CviAII | CATG | 8 cut(s) | 46, 518, 1570, 1637, 1670, 1750, 2185, 2494 |
| CviQI | GTAC | 8 cut(s) | 613, 1171, 1387, 1783, 1975, 2503, 2600, 2704 |
| DpnI | GATC | 8 cut(s) | 1258, 1313, 1482, 1494, 1632, 1646, 1676, 1939 |
| DpnII | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 47 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 47 |
| EaeI | YGGCCR | 1 cut(s) | 520 |
| Eam1104I | CTCTTC | 6 cut(s) | 210, 941, 1544, 1962, 2124, 2790 |
| EarI | CTCTTC | 6 cut(s) | 210, 941, 1544, 1962, 2124, 2790 |
| Eco130I | CCWWGG | 6 cut(s) | 45, 517, 1649, 1695, 1749, 2364 |
| Eco31I | GGTCTC | 1 cut(s) | 55 |
| Eco47I | GGWCC | 2 cut(s) | 424, 2416 |
| Eco57I | CTGAAG | 5 cut(s) | 191, 375, 560, 2253, 2750 |
| Eco88I | CYCGRG | 2 cut(s) | 2065, 2603 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 719 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2538 |
| EcoRII | CCWGG | 5 cut(s) | 534, 630, 714, 1330, 2087 |
| EcoT14I | CCWWGG | 6 cut(s) | 45, 517, 1649, 1695, 1749, 2364 |
| ErhI | CCWWGG | 6 cut(s) | 45, 517, 1649, 1695, 1749, 2364 |
| Esp3I | CGTCTC | 2 cut(s) | 2632, 2741 |
| FaeI | CATG | 8 cut(s) | 49, 521, 1573, 1640, 1673, 1753, 2188, 2497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1911, 1943 |
| FaqI | GGGAC | 3 cut(s) | 196, 410, 1580 |
| FatI | CATG | 8 cut(s) | 45, 517, 1569, 1636, 1669, 1749, 2184, 2493 |
| FauI | CCCGC | 3 cut(s) | 1734, 2768, 2783 |
| FbaI | TGATCA | 1 cut(s) | 1674 |
| FblI | GTMKAC | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 8 cut(s) | 915, 986, 1047, 1721, 2133, 2361, 2678, 2865 |
| FokI | GGATG | 5 cut(s) | 296, 1405, 1481, 2301, 2711 |
| Fsp4HI | GCNGC | 8 cut(s) | 915, 986, 1047, 1721, 2133, 2361, 2678, 2865 |
| GlaI | GCGC | 1 cut(s) | 2274 |
| GluI | GCNGC | 8 cut(s) | 915, 986, 1047, 1721, 2133, 2361, 2678, 2865 |
| GsaI | CCCAGC | 1 cut(s) | 2840 |
| GsuI | CTGGAG | 5 cut(s) | 737, 893, 913, 2539, 2765 |
| HaeIII | GGCC | 7 cut(s) | 60, 522, 778, 836, 878, 2246, 2540 |
| HapII | CCGG | 7 cut(s) | 422, 779, 918, 1390, 1484, 1736, 2161 |
| HgaI | GACGC | 1 cut(s) | 1721 |
| HhaI | GCGC | 1 cut(s) | 2275 |
| Hin1I | GRCGYC | 1 cut(s) | 501 |
| Hin1II | CATG | 8 cut(s) | 49, 521, 1573, 1640, 1673, 1753, 2188, 2497 |
| Hin6I | GCGC | 1 cut(s) | 2273 |
| HinP1I | GCGC | 1 cut(s) | 2273 |
| HincII | GTYRAC | 1 cut(s) | 889 |
| HindII | GTYRAC | 1 cut(s) | 889 |
| HindIII | AAGCTT | 1 cut(s) | 935 |
| HinfI | GANTC | 8 cut(s) | 231, 386, 748, 1503, 2036, 2116, 2240, 2305 |
| HpaI | GTTAAC | 1 cut(s) | 889 |
| HpaII | CCGG | 7 cut(s) | 422, 779, 918, 1390, 1484, 1736, 2161 |
| Hpy166II | GTNNAC | 4 cut(s) | 505, 889, 1115, 2410 |
| Hpy188III | TCNNGA | 9 cut(s) | 1252, 1484, 1540, 1598, 1996, 2067, 2509, 2556, 2870 |
| Hpy8I | GTNNAC | 4 cut(s) | 505, 889, 1115, 2410 |
| HpyCH4III | ACNGT | 5 cut(s) | 119, 1289, 1386, 2374, 2830 |
| HpyCH4IV | ACGT | 6 cut(s) | 501, 2219, 2598, 2706, 2718, 2723 |
| HpySE526I | ACGT | 6 cut(s) | 501, 2219, 2598, 2706, 2718, 2723 |
| Hsp92I | GRCGYC | 1 cut(s) | 501 |
| Hsp92II | CATG | 8 cut(s) | 49, 521, 1573, 1640, 1673, 1753, 2188, 2497 |
| HspAI | GCGC | 1 cut(s) | 2273 |
| Kpn2I | TCCGGA | 1 cut(s) | 1483 |
| KpnI | GGTACC | 1 cut(s) | 1390 |
| KroI | GCCGGC | 1 cut(s) | 2160 |
| KroNI | GCCGGC | 1 cut(s) | 2162 |
| Ksp22I | TGATCA | 1 cut(s) | 1674 |
| KspAI | GTTAAC | 1 cut(s) | 889 |
| Kzo9I | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| LguI | GCTCTTC | 3 cut(s) | 210, 1962, 2790 |
| LmnI | GCTCC | 5 cut(s) | 823, 1519, 1555, 1728, 2901 |
| Lsp1109I | GCAGC | 7 cut(s) | 972, 1033, 1732, 2144, 2372, 2664, 2876 |
| LweI | GCATC | 5 cut(s) | 26, 1735, 1968, 2549, 2823 |
| MabI | ACCWGGT | 1 cut(s) | 534 |
| MaeII | ACGT | 6 cut(s) | 501, 2219, 2598, 2706, 2718, 2723 |
| MaeIII | GTNAC | 8 cut(s) | 497, 661, 682, 1153, 1863, 2684, 2719, 2766 |
| MalI | GATC | 8 cut(s) | 1258, 1313, 1482, 1494, 1632, 1646, 1676, 1939 |
| MboI | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| MfeI | CAATTG | 1 cut(s) | 1230 |
| MflI | RGATCY | 1 cut(s) | 1630 |
| MlsI | TGGCCA | 1 cut(s) | 522 |
| MluNI | TGGCCA | 1 cut(s) | 522 |
| MlyI | GAGTC | 3 cut(s) | 240, 2110, 2234 |
| MmeI | TCCRAC | 4 cut(s) | 501, 1779, 1948, 2500 |
| Mox20I | TGGCCA | 1 cut(s) | 522 |
| MroI | TCCGGA | 1 cut(s) | 1483 |
| MroNI | GCCGGC | 1 cut(s) | 2160 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2291, 2621 |
| MscI | TGGCCA | 1 cut(s) | 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| Msp20I | TGGCCA | 1 cut(s) | 522 |
| MspA1I | CMGCKG | 1 cut(s) | 2790 |
| MspCI | CTTAAG | 2 cut(s) | 235, 1954 |
| MspI | CCGG | 7 cut(s) | 422, 779, 918, 1390, 1484, 1736, 2161 |
| MspR9I | CCNGG | 7 cut(s) | 536, 632, 716, 780, 919, 1332, 2089 |
| MunI | CAATTG | 1 cut(s) | 1230 |
| Mva1269I | GAATGC | 4 cut(s) | 1091, 1535, 2076, 2435 |
| MvaI | CCWGG | 5 cut(s) | 536, 632, 716, 1332, 2089 |
| MvnI | CGCG | 1 cut(s) | 2275 |
| NaeI | GCCGGC | 1 cut(s) | 2162 |
| NciI | CCSGG | 2 cut(s) | 780, 919 |
| NcoI | CCATGG | 3 cut(s) | 45, 517, 1749 |
| NdeII | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| NgoMIV | GCCGGC | 1 cut(s) | 2160 |
| NlaIII | CATG | 8 cut(s) | 49, 521, 1573, 1640, 1673, 1753, 2188, 2497 |
| NlaIV | GGNNCC | 6 cut(s) | 426, 515, 1329, 1388, 2086, 2648 |
| NmeAIII | GCCGAG | 1 cut(s) | 2222 |
| NmuCI | GTSAC | 3 cut(s) | 497, 1863, 2719 |
| NspI | RCATGY | 1 cut(s) | 1573 |
| PaeR7I | CTCGAG | 2 cut(s) | 2065, 2603 |
| PciSI | GCTCTTC | 3 cut(s) | 210, 1962, 2790 |
| PctI | GAATGC | 4 cut(s) | 1091, 1535, 2076, 2435 |
| PdiI | GCCGGC | 1 cut(s) | 2162 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2291, 2621 |
| PfeI | GAWTC | 5 cut(s) | 386, 748, 1503, 2036, 2305 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2695 |
| PinAI | ACCGGT | 1 cut(s) | 1735 |
| PkrI | GCNGC | 8 cut(s) | 916, 987, 1048, 1722, 2134, 2362, 2679, 2866 |
| PleI | GAGTC | 3 cut(s) | 239, 2110, 2234 |
| PpsI | GAGTC | 3 cut(s) | 239, 2110, 2234 |
| Ppu21I | YACGTR | 1 cut(s) | 2707 |
| PshBI | ATTAAT | 1 cut(s) | 1176 |
| Psp6I | CCWGG | 5 cut(s) | 534, 630, 714, 1330, 2087 |
| PspFI | CCCAGC | 1 cut(s) | 2836 |
| PspGI | CCWGG | 5 cut(s) | 534, 630, 714, 1330, 2087 |
| PspN4I | GGNNCC | 6 cut(s) | 426, 515, 1329, 1388, 2086, 2648 |
| PspPI | GGNCC | 5 cut(s) | 424, 776, 2245, 2416, 2538 |
| PspXI | VCTCGAGB | 1 cut(s) | 2603 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 103, 135 |
| PstI | CTGCAG | 1 cut(s) | 2134 |
| PsuI | RGATCY | 1 cut(s) | 1630 |
| RsaI | GTAC | 8 cut(s) | 614, 1172, 1388, 1784, 1976, 2504, 2601, 2705 |
| RsaNI | GTAC | 8 cut(s) | 613, 1171, 1387, 1783, 1975, 2503, 2600, 2704 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SapI | GCTCTTC | 3 cut(s) | 210, 1962, 2790 |
| SatI | GCNGC | 8 cut(s) | 915, 986, 1047, 1721, 2133, 2361, 2678, 2865 |
| Sau3AI | GATC | 8 cut(s) | 1256, 1311, 1480, 1492, 1630, 1644, 1674, 1937 |
| Sau96I | GGNCC | 5 cut(s) | 424, 776, 2245, 2416, 2538 |
| ScaI | AGTACT | 2 cut(s) | 614, 1976 |
| SchI | GAGTC | 3 cut(s) | 240, 2110, 2234 |
| ScrFI | CCNGG | 7 cut(s) | 536, 632, 716, 780, 919, 1332, 2089 |
| SexAI | ACCWGGT | 1 cut(s) | 534 |
| SfaNI | GCATC | 5 cut(s) | 26, 1735, 1968, 2549, 2823 |
| SfcI | CTRYAG | 1 cut(s) | 2130 |
| Sfr274I | CTCGAG | 2 cut(s) | 2065, 2603 |
| SinI | GGWCC | 2 cut(s) | 424, 2416 |
| SlaI | CTCGAG | 2 cut(s) | 2065, 2603 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| SpeI | ACTAGT | 1 cut(s) | 1682 |
| SsiI | CCGC | 5 cut(s) | 915, 1727, 2213, 2775, 2790 |
| SspI | AATATT | 1 cut(s) | 139 |
| StyD4I | CCNGG | 7 cut(s) | 534, 630, 714, 778, 917, 1330, 2087 |
| StyI | CCWWGG | 6 cut(s) | 45, 517, 1649, 1695, 1749, 2364 |
| TaaI | ACNGT | 5 cut(s) | 119, 1289, 1386, 2374, 2830 |
| TaiI | ACGT | 6 cut(s) | 504, 2222, 2601, 2709, 2721, 2726 |
| TatI | WGTACW | 3 cut(s) | 612, 1974, 2502 |
| TauI | GCSGC | 1 cut(s) | 917 |
| TfiI | GAWTC | 5 cut(s) | 386, 748, 1503, 2036, 2305 |
| TscAI | CASTG | 5 cut(s) | 778, 1312, 1872, 2134, 2835 |
| TseFI | GTSAC | 3 cut(s) | 497, 1863, 2719 |
| TseI | GCWGC | 7 cut(s) | 985, 1046, 1720, 2132, 2360, 2677, 2864 |
| Tsp45I | GTSAC | 3 cut(s) | 497, 1863, 2719 |
| TspRI | CASTG | 5 cut(s) | 778, 1312, 1872, 2134, 2835 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2695 |
| Vha464I | CTTAAG | 2 cut(s) | 235, 1954 |
| VpaK11BI | GGWCC | 2 cut(s) | 424, 2416 |
| VspI | ATTAAT | 1 cut(s) | 1176 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 719 |
| XapI | RAATTY | 5 cut(s) | 405, 432, 1243, 1456, 1705 |
| XceI | RCATGY | 1 cut(s) | 1573 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2298 |
| XhoI | CTCGAG | 2 cut(s) | 2065, 2603 |
| XmiI | GTMKAC | 1 cut(s) | 504 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2291, 2621 |
| ZraI | GACGTC | 1 cut(s) | 502 |
| ZrmI | AGTACT | 2 cut(s) | 614, 1976 |