Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028601.1

Orthogroup ID

OG0015845

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 821

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggcagtgttccagtctctggtgttgttgggctttttggtctttttggcttcaacccagtctcagcctgctaaagaagtaagttatcgtagactttcgaggcctctgattggtcatgatgggaaggtttatgcttgctctgagaacgatttgcttgcatttgaaagtaacgggactattgcttggaccctgcatttgaattatacatgcagttttgatatgcctccaattcatggtggtaaagaaaagaatgtcggaaatgttgactccgaaatttcaatgtggtcttttaaagttgttaatgtttgcaagtgttttcagatatatctggttgcagaaaatagggtgcttaaggtcagcttgctaaacaatgggacttctaaaccttctgcagaagttttacttagtacagaaccaactaaagaaggagatggtgcgattgttgggctgacagttagcaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0007275 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ_2

Protein Analysis

154

Amino Acids

16.8

Weight (kDa)

6.28

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16020
fragaria_vesca	FvH4_6g45490
malus_domestica	MD09G1082500.v1.1
prunus_persica	Prupe.3G241200_v2.0.a1 Prupe.3G241200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0163431
rosa_laevigata	RLG00000021392
rosa_multiflora	Rmu_sc0028601.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087340
rosa_rugosa	Rorug02G0502600
rosa_samantha	Rh2AG569600 Rh2BG581700 Rh2CG551500 Rh2DG591600
rosa_wichuraiana	Rw2G047140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	19, 233
AccI	GTMKAC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	19, 110, 233
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	54, 164, 199, 279
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	21, 66
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	273
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AspS9I	GGNCC	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	186
BccI	CCATC	2 cut(s)	113, 425
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcoDI	GTCTC	2 cut(s)	21, 66
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 110, 233
Bse1I	ACTGG	2 cut(s)	13, 58
BseLI	CCNNNNNNNGG	3 cut(s)	19, 110, 233
BseMII	CTCAG	2 cut(s)	77, 132
BseNI	ACTGG	2 cut(s)	13, 58
BshFI	GGCC	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	187, 388
BslI	CCNNNNNNNGG	3 cut(s)	19, 110, 233
BsmAI	GTCTC	2 cut(s)	21, 66
BsmFI	GGGAC	2 cut(s)	187, 388
BsnI	GGCC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	76, 133
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	13, 58
Bst4CI	ACNGT	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	350
BstC8I	GCNNGC	4 cut(s)	69, 136, 156, 362
BstDEI	CTNAG	3 cut(s)	63, 141, 404
BstMAI	GTCTC	2 cut(s)	21, 66
BstNSI	RCATGY	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	4 cut(s)	69, 136, 156, 362
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	116, 207, 233
CviJI	RGCY	6 cut(s)	33, 50, 67, 103, 360, 448
CviKI_1	RGCY	6 cut(s)	33, 50, 67, 103, 360, 448
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	63, 141, 404
DraI	TTTAAA	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	186
FaeI	CATG	3 cut(s)	119, 210, 236
FaiI	YATR	7 cut(s)	117, 132, 204, 208, 221, 234, 325
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 387, 419
FaqI	GGGAC	2 cut(s)	187, 388
FatI	CATG	3 cut(s)	115, 206, 232
FblI	GTMKAC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	119, 210, 236
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	92, 265
Hpy188I	TCNGA	5 cut(s)	108, 142, 257, 271, 321
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	92, 265
HpyAV	CCTTC	3 cut(s)	118, 396, 419
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	158, 193, 210, 309, 335, 392
HpyF3I	CTNAG	3 cut(s)	63, 141, 404
Hsp92II	CATG	3 cut(s)	119, 210, 236
LpnPI	CCDG	6 cut(s)	5, 26, 71, 81, 203, 314
MaeIII	GTNAC	1 cut(s)	167
MluCI	AATT	3 cut(s)	199, 228, 273
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	93, 114, 234
MseI	TTAA	3 cut(s)	291, 300, 351
MspCI	CTTAAG	1 cut(s)	350
NlaIII	CATG	3 cut(s)	119, 210, 236
NlaIV	GGNNCC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	210
PagI	TCATGA	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	103
PflMI	CCANNNNNTGG	2 cut(s)	19, 233
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	291, 300, 351
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	260
SetI	ASST	4 cut(s)	129, 357, 362, 388
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	199, 228, 273
SseBI	AGGCCT	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	199, 228, 273
TatI	WGTACW	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	291, 300, 351
Tru9I	TTAA	3 cut(s)	291, 300, 351
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	2 cut(s)	19, 233
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.