Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015845

Physical Location & Seq

Genomic Coordinates Reverse (-)

82418389 .. 82423911

Gene Structure 5523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG591600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2571 bp

ATGGAGCAGTTAAGTAACCGTCTACTTTTTAGAGACCATCACTGTTACACTATTACATTGTTCTCTTCAATCTCAACAATGGCAGTGTTCCAGTCTCTGGTGTTGTTGGGCTTTTTGGTCTTTTTGGCTTCAACCCAGTCTCAGCCTGCTAAAGAAGCAAGTTATCGTAGACTTTCGAGGCCTCTGATTGGTCATGATGGGAAGGTTTATGCTTGCTCTGAGAACGATTTGCTTGCATTTGAAAGTAACGGGACTATTGCTTGGACCCTGCATTTGAATTATACATGCAGTTTTGATATGCCTCCAATTCATGGTGGTAAAGAAAAGATATATCTGGTTGCAGAAAATAGGGTGCTTAAGGTCAGCTTGCTAAACAATGGGACTTCTAAACCTTCTGCAGAAGTTTTACTTAGTACAGAACCAACTAAAGAAGGAGATGGTGCGATTGTTGGGCTTGCAGTTAGCACAGTGAGTTCATCTGTATATGTAAACATTGGACGTAGGGGTCTCTTTGCATACACGGCGCGTGGACAATTGCTCTGGAGTGCTGGACCTGTGATCGATCAATATGGATATCAACAGGGTTGTAGGAAGAATATTGCAGATTGTTACTTTAACTCTGTCCCTGTGATTGATCAATGTGAGGCTAGTATATATATATCCAATAATGGAGGAGAATTGTACTCTCTATCAACTCGTAGTCCTCATTTCAAATGGATCCAGGATTTAAGTTCTTATGACAAAGTTTTCTCTATAACTCCTGGAAACAATGGTCGATTGTATGTTACTGTTCCAAACAAGGCTCTTTTGTTGGCACTAGATGTTTCTTCAGGAAATGTGCTGTGGGAGGGGAGTATTGGGCCATTGAGTACAGCAGATCACACACCAATAGTGGATTCTAACGGTTGGATATCTATTGGTTCATTAGATGGGTTCCTATACTCATTTTCGCCTACTGGGGTTCTTAAGAAATTCTCAAAAGCAGCTGCAATGGACTCAGTGATCCAAGTCACTCCATTTCTTGACTGCACTGGCTTTGCAATTTATATATCTCAGACCGAAATGGATGGGAAGATCAGCCACACAGTAGGTGAATATACTTTTGTGTCAGCAATGAAACCCAAAAGTGTACTTTTTACCTTGTATGTTCCAGCAACTGGGTCTATCTACTGGTCTGGAAGATATCCTGGTGATCAATTCTCATCCTTGATTTCTCATAGTGATCTCCACCATTTTATACTAGACGAGAGGATTGTTCTTGCCTTCGTTGCTGCTTCAAAGACCGGAAGCCCACTGGCATGCCGTTCCACACGTCAAAAGTTTATGTCTAGCTGCTCCCAAGTAACGCCAAAGATTGTCAACATCTACACAGGTAGTCAAAGGGCAATACTCTTGTTCCTGTTTTTTGAATCTGTAATCTTGGTAGTACTAGCTGGACTTGTGCGGTTTTGCTGTATATTTTGGAGTAAAAGGAAGCTTCAGGGTCAAAACCTTGGAAATTTTCTTGAAAAGCGGCGTTCTCTTAGACTCAAAAAGAAGGCATTCGATAGGACAATTACAGAACTTGAGCAAAAAGCAGCAAATGAAGCAGTGGCCAACGACGAGGCGCTTGAGAAATTAGGCAGTCTGTTACAAGAAAGGGAAGGCATCGAGAGGAAGCTATCAACAACCTATAGTTTGGGAAGAGATGGGATCAGCTCAAGGTCAAAATCTCTTCTTCCTTTGTATGATGGGAAAACAAGAAGCTATTATTTTCAAGGAGCTAAGAAAGAGAGTGTTACTGTCTTCCAAACATTGAATGATACATCATCTTCCAAAGAAAACAGCAGTGAGGGGGAGAGTAGCTGGACTTCTTATGAAGACAAGGGGCAAGAACCCTTGGAACAAGAGAGTTCAAGTGAGGGTGGGTTCTTTACTAGGGATTACCGGAGAAGTCCATCGGAGCCAGCTTCGAGCTCAACAGGATTTGTGGATCATGAGGGTGAAGTTAACTGCGGCGGCGCATTTCAACAAAACCCTAATCTCACTCAACCCGAGATTCCAAGTGTGGTTTCGGTGTGGCTTGTTATAGGAAGAAGTTGGTTCTTGATCGAAATGGAATCTGAGGATTTTATTGCTCTCCCGGATTCTGGTGACTCTATTGAGGAGGTGAACGACAAACTTAATAATGAGAGTGACTCTAAAGAGGTTGATGCTCAACCTACAAACTCTGAGGATAAAGAAGATAAACCAAACAGTGAGGATCTAGGGCGGGAGAGCATTGATCAATGTGAAGAAGGCGAATGCATACCAGAAGCAAGCCTTGCGAATGAATTGGTTGATAACAATTCAGATATGGAAATCGAGGATATAAACAACCTCCCTGCTTTGACTAGTTCTGTTCCCAAGGAGGGGGATGTTGAGAATGTAAATATTGATTTGCACTCGACATTGTATGAGAATGGTCACCTTGCAGTTCAAGATACAAGTCCCTTTGGAATCCACAATACGGATGTCACTTGTATCCTTCTTCCACATTTCCATATTCTGTTTTTCTCATTTAAATTATCCTTTGTTCAACTGCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0007275 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ_2

Protein Analysis

856

Amino Acids

94.59

Weight (kDa)

5.08

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16020
fragaria_vesca	FvH4_6g45490
malus_domestica	MD09G1082500.v1.1
prunus_persica	Prupe.3G241200_v2.0.a1 Prupe.3G241200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0163431
rosa_laevigata	RLG00000021392
rosa_multiflora	Rmu_sc0028601.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087340
rosa_rugosa	Rorug02G0502600
rosa_samantha	Rh2AG569600 Rh2BG581700 Rh2CG551500 Rh2DG591600
rosa_wichuraiana	Rw2G047140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	504
AccB7I	CCANNNNNTGG	3 cut(s)	97, 311, 1157
AccI	GTMKAC	2 cut(s)	22, 169
AccII	CGCG	1 cut(s)	526
AciI	CCGC	5 cut(s)	1444, 1513, 1995, 1998, 2251
AclWI	GGATC	6 cut(s)	712, 725, 997, 1700, 1980, 2250
AcoI	YGGCCR	1 cut(s)	1593
AcsI	RAATTY	2 cut(s)	971, 1498
AcuI	CTGAAG	2 cut(s)	813, 1463
AfaI	GTAC	5 cut(s)	415, 683, 871, 1131, 1428
AfiI	CCNNNNNNNGG	8 cut(s)	97, 188, 311, 1157, 2129, 2390, 2391, 2488
AflII	CTTAAG	2 cut(s)	356, 965
AflIII	ACRYGT	1 cut(s)	1310
AhlI	ACTAGT	1 cut(s)	2372
AjiI	CACGTC	1 cut(s)	1313
AjnI	CCWGG	3 cut(s)	720, 760, 1186
AjuI	GAANNNNNNNTTGG	4 cut(s)	880, 912, 2035, 2067
Alw21I	GWGCWC	1 cut(s)	1958
Alw26I	GTCTC	4 cut(s)	27, 99, 144, 512
AlwI	GGATC	6 cut(s)	712, 725, 997, 1700, 1980, 2250
AlwNI	CAGNNNCTG	2 cut(s)	97, 1157
Ama87I	CYCGRG	1 cut(s)	2033
AoxI	GGCC	3 cut(s)	179, 860, 1593
ApeKI	GCWGC	5 cut(s)	983, 986, 1271, 1332, 1577
ApoI	RAATTY	2 cut(s)	971, 1498
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
Asp700I	GAANNNNTTC	1 cut(s)	1541
AspLEI	GCGC	3 cut(s)	526, 1609, 2003
AspS9I	GGNCC	3 cut(s)	264, 551, 860
AsuC2I	CCSGG	1 cut(s)	2123
AsuHPI	GGTGA	6 cut(s)	1103, 1202, 1994, 2144, 2161, 2438
AvaI	CYCGRG	1 cut(s)	2033
AvaII	GGWCC	2 cut(s)	264, 551
BalI	TGGCCA	1 cut(s)	1595
BamHI	GGATCC	1 cut(s)	717
BanII	GRGCYC	1 cut(s)	1958
BarI	GAAGNNNNNNTAC	2 cut(s)	1834, 1866
BbsI	GAAGAC	2 cut(s)	1777, 1866
Bbv12I	GWGCWC	1 cut(s)	1958
BbvI	GCAGC	5 cut(s)	973, 995, 1258, 1319, 1589
BccI	CCATC	8 cut(s)	45, 191, 431, 923, 1061, 1682, 1724, 1945
BceAI	ACGGC	2 cut(s)	537, 1287
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	3 cut(s)	722, 762, 1188
BciVI	GTATCC	1 cut(s)	2513
BclI	TGATCA	3 cut(s)	634, 1192, 2263
BcnI	CCSGG	1 cut(s)	2123
BcoDI	GTCTC	4 cut(s)	27, 99, 144, 512
BcuI	ACTAGT	1 cut(s)	2372
BfaI	CTAG	9 cut(s)	648, 818, 1241, 1329, 1430, 1917, 2246, 2373, 2569
BfmI	CTRYAG	2 cut(s)	396, 1672
BfoI	RGCGCY	1 cut(s)	1610
BfrI	CTTAAG	2 cut(s)	356, 965
BfuI	GTATCC	1 cut(s)	2513
BisI	GCNGC	8 cut(s)	984, 987, 1272, 1333, 1514, 1578, 1996, 1999
BlsI	GCNGC	8 cut(s)	985, 988, 1273, 1334, 1515, 1579, 1997, 2000
BmcAI	AGTACT	1 cut(s)	1428
Bme1390I	CCNGG	4 cut(s)	722, 762, 1188, 2123
Bme18I	GGWCC	2 cut(s)	264, 551
BmeT110I	CYCGRG	1 cut(s)	2033
BmgBI	CACGTC	1 cut(s)	1313
BmgT120I	GGNCC	3 cut(s)	264, 551, 860
BmiI	GGNNCC	4 cut(s)	266, 719, 935, 1944
BmrFI	CCNGG	4 cut(s)	722, 762, 1188, 2123
BmrI	ACTGGG	3 cut(s)	130, 966, 1167
BmsI	GCATC	2 cut(s)	1656, 2182
BmuI	ACTGGG	3 cut(s)	130, 966, 1167
BpiI	GAAGAC	2 cut(s)	1777, 1866
BplI	GAGNNNNNCTC	2 cut(s)	2162, 2194
BpmI	CTGGAG	1 cut(s)	562
BpuEI	CTTGAG	3 cut(s)	1586, 1631, 1684
BpuMI	CCSGG	1 cut(s)	2123
Bsa29I	ATCGAT	1 cut(s)	561
BsaI	GGTCTC	2 cut(s)	27, 512
BsaJI	CCNNGG	3 cut(s)	1492, 1878, 2385
BsaWI	WCCGGW	2 cut(s)	1283, 1926
Bsc4I	CCNNNNNNNGG	8 cut(s)	97, 188, 311, 1157, 2129, 2390, 2391, 2488
Bse1I	ACTGG	7 cut(s)	91, 136, 961, 1036, 1162, 1175, 1299
Bse3DI	GCAATG	2 cut(s)	996, 1119
BseBI	CCWGG	3 cut(s)	722, 762, 1188
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	1492, 1878, 2385
BseGI	GGATG	4 cut(s)	1072, 1202, 2401, 2497
BseLI	CCNNNNNNNGG	8 cut(s)	97, 188, 311, 1157, 2129, 2390, 2391, 2488
BseMI	GCAATG	2 cut(s)	996, 1119
BseMII	CTCAG	6 cut(s)	155, 210, 1011, 1067, 2094, 2202
BseNI	ACTGG	7 cut(s)	91, 136, 961, 1036, 1162, 1175, 1299
BseRI	GAGGAG	2 cut(s)	687, 2159
BseXI	GCAGC	5 cut(s)	973, 995, 1258, 1319, 1589
BsgI	GTGCAG	1 cut(s)	1012
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	181, 862, 1595
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	1958
BsiHKCI	CYCGRG	1 cut(s)	2033
BsiSI	CCGG	3 cut(s)	1284, 1927, 2123
BslFI	GGGAC	4 cut(s)	265, 394, 608, 2454
BslI	CCNNNNNNNGG	8 cut(s)	97, 188, 311, 1157, 2129, 2390, 2391, 2488
BsmAI	GTCTC	4 cut(s)	27, 99, 144, 512
BsmFI	GGGAC	4 cut(s)	265, 394, 608, 2454
BsmI	GAATGC	2 cut(s)	1541, 2288
BsnI	GGCC	3 cut(s)	181, 862, 1595
Bso31I	GGTCTC	2 cut(s)	27, 512
BsoBI	CYCGRG	1 cut(s)	2033
Bsp1286I	GDGCHC	1 cut(s)	1958
BspACI	CCGC	5 cut(s)	1444, 1513, 1995, 1998, 2251
BspANI	GGCC	3 cut(s)	181, 862, 1595
BspCNI	CTCAG	6 cut(s)	154, 211, 1010, 1066, 2095, 2203
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	2 cut(s)	193, 1975
BspLI	GGNNCC	4 cut(s)	266, 719, 935, 1944
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	6 cut(s)	712, 725, 997, 1700, 1980, 2250
BspTI	CTTAAG	2 cut(s)	356, 965
BspTNI	GGTCTC	2 cut(s)	27, 512
BsrDI	GCAATG	2 cut(s)	996, 1119
BsrI	ACTGG	7 cut(s)	91, 136, 961, 1036, 1162, 1175, 1299
BssECI	CCNNGG	3 cut(s)	1492, 1878, 2385
BssT1I	CCWWGG	3 cut(s)	1492, 1878, 2385
Bst2UI	CCWGG	3 cut(s)	722, 762, 1188
Bst4CI	ACNGT	8 cut(s)	20, 44, 469, 790, 905, 1087, 1783, 2237
Bst6I	CTCTTC	3 cut(s)	70, 1678, 1719
BstAFI	CTTAAG	2 cut(s)	356, 965
BstAPI	GCANNNNNTGC	1 cut(s)	2303
BstC8I	GCNNGC	8 cut(s)	147, 214, 234, 368, 456, 1300, 1947, 2299
BstDEI	CTNAG	9 cut(s)	141, 219, 410, 997, 1053, 1523, 1764, 2103, 2211
BstEII	GGTNACC	1 cut(s)	2444
BstF5I	GGATG	4 cut(s)	1072, 1202, 2401, 2497
BstFNI	CGCG	1 cut(s)	526
BstH2I	RGCGCY	1 cut(s)	1610
BstHHI	GCGC	3 cut(s)	526, 1609, 2003
BstMAI	GTCTC	4 cut(s)	27, 99, 144, 512
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 521, 1268, 1586, 2303
BstNI	CCWGG	3 cut(s)	722, 762, 1188
BstNSI	RCATGY	2 cut(s)	288, 1302
BstPI	GGTNACC	1 cut(s)	2444
BstSCI	CCNGG	4 cut(s)	720, 760, 1186, 2121
BstSFI	CTRYAG	2 cut(s)	396, 1672
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	5 cut(s)	973, 995, 1258, 1319, 1589
BstV2I	GAAGAC	2 cut(s)	1777, 1866
BstX2I	RGATCY	2 cut(s)	717, 2242
BstYI	RGATCY	2 cut(s)	717, 2242
Bsu15I	ATCGAT	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	2513
BsuRI	GGCC	3 cut(s)	181, 862, 1595
BsuTUI	ATCGAT	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	1313
BtsCI	GGATG	4 cut(s)	1072, 1202, 2401, 2497
BtsI	GCAGTG	3 cut(s)	90, 1596, 1834
BtsIMutI	CAGTG	9 cut(s)	40, 90, 474, 1005, 1029, 1292, 1596, 1834, 2242
Cac8I	GCNNGC	8 cut(s)	147, 214, 234, 368, 456, 1300, 1947, 2299
CaiI	CAGNNNCTG	2 cut(s)	97, 1157
CciI	TCATGA	2 cut(s)	193, 1975
CfoI	GCGC	3 cut(s)	526, 1609, 2003
Cfr13I	GGNCC	3 cut(s)	264, 551, 860
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	5 cut(s)	414, 682, 870, 1130, 1427
CviAII	CATG	5 cut(s)	194, 285, 311, 1299, 1976
CviQI	GTAC	5 cut(s)	414, 682, 870, 1130, 1427
DdeI	CTNAG	9 cut(s)	141, 219, 410, 997, 1053, 1523, 1764, 2103, 2211
DraI	TTTAAA	1 cut(s)	2542
DrdI	GACNNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	1593
Eam1104I	CTCTTC	3 cut(s)	70, 1678, 1719
EarI	CTCTTC	3 cut(s)	70, 1678, 1719
Ecl136II	GAGCTC	1 cut(s)	1956
Eco130I	CCWWGG	3 cut(s)	1492, 1878, 2385
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	1958
Eco31I	GGTCTC	2 cut(s)	27, 512
Eco32I	GATATC	3 cut(s)	575, 912, 1184
Eco47I	GGWCC	2 cut(s)	264, 551
Eco53kI	GAGCTC	1 cut(s)	1956
Eco57I	CTGAAG	2 cut(s)	813, 1463
Eco88I	CYCGRG	1 cut(s)	2033
Eco91I	GGTNACC	1 cut(s)	2444
EcoICRI	GAGCTC	1 cut(s)	1956
EcoO65I	GGTNACC	1 cut(s)	2444
EcoRII	CCWGG	3 cut(s)	720, 760, 1186
EcoRV	GATATC	3 cut(s)	575, 912, 1184
EcoT14I	CCWWGG	3 cut(s)	1492, 1878, 2385
EcoT22I	ATGCAT	1 cut(s)	2288
EcoT38I	GRGCYC	1 cut(s)	1958
ErhI	CCWWGG	3 cut(s)	1492, 1878, 2385
FaeI	CATG	5 cut(s)	197, 288, 314, 1302, 1979
FalI	AAGNNNNNCTT	6 cut(s)	350, 382, 393, 425, 2286, 2318
FaqI	GGGAC	4 cut(s)	265, 394, 608, 2454
FatI	CATG	5 cut(s)	193, 284, 310, 1298, 1975
FauI	CCCGC	1 cut(s)	2244
FbaI	TGATCA	3 cut(s)	634, 1192, 2263
FblI	GTMKAC	2 cut(s)	22, 169
Fnu4HI	GCNGC	8 cut(s)	984, 987, 1272, 1333, 1514, 1578, 1996, 1999
FokI	GGATG	4 cut(s)	1079, 1189, 2408, 2504
FriOI	GRGCYC	1 cut(s)	1958
Fsp4HI	GCNGC	8 cut(s)	984, 987, 1272, 1333, 1514, 1578, 1996, 1999
FspBI	CTAG	9 cut(s)	648, 818, 1241, 1329, 1430, 1917, 2246, 2373, 2569
GlaI	GCGC	3 cut(s)	525, 1608, 2002
GluI	GCNGC	8 cut(s)	984, 987, 1272, 1333, 1514, 1578, 1996, 1999
GsuI	CTGGAG	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	1610
HaeIII	GGCC	3 cut(s)	181, 862, 1595
HapII	CCGG	3 cut(s)	1284, 1927, 2123
HhaI	GCGC	3 cut(s)	526, 1609, 2003
Hin1II	CATG	5 cut(s)	197, 288, 314, 1302, 1979
Hin6I	GCGC	3 cut(s)	524, 1607, 2001
HinP1I	GCGC	3 cut(s)	524, 1607, 2001
HincII	GTYRAC	2 cut(s)	1360, 1990
HindII	GTYRAC	2 cut(s)	1360, 1990
HindIII	AAGCTT	1 cut(s)	1475
HpaI	GTTAAC	1 cut(s)	1990
HpaII	CCGG	3 cut(s)	1284, 1927, 2123
HphI	GGTGA	6 cut(s)	1103, 1202, 1994, 2144, 2161, 2438
Hpy166II	GTNNAC	8 cut(s)	23, 170, 490, 530, 1130, 1360, 1990, 2152
Hpy188I	TCNGA	7 cut(s)	186, 220, 1056, 1942, 2104, 2212, 2332
Hpy8I	GTNNAC	8 cut(s)	23, 170, 490, 530, 1130, 1360, 1990, 2152
Hpy99I	CGWCG	1 cut(s)	1604
HpyAV	CCTTC	8 cut(s)	196, 402, 425, 1273, 1531, 1637, 2270, 2516
HpyCH4III	ACNGT	8 cut(s)	20, 44, 469, 790, 905, 1087, 1783, 2237
HpyCH4IV	ACGT	2 cut(s)	499, 1312
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 521, 1268, 1586, 2303
HpyF3I	CTNAG	9 cut(s)	141, 219, 410, 997, 1053, 1523, 1764, 2103, 2211
HpySE526I	ACGT	2 cut(s)	499, 1312
Hsp92II	CATG	5 cut(s)	197, 288, 314, 1302, 1979
HspAI	GCGC	3 cut(s)	524, 1607, 2001
Ksp22I	TGATCA	3 cut(s)	634, 1192, 2263
KspAI	GTTAAC	1 cut(s)	1990
LmnI	GCTCC	4 cut(s)	4, 1340, 1760, 1942
Lsp1109I	GCAGC	5 cut(s)	973, 995, 1258, 1319, 1589
LweI	GCATC	2 cut(s)	1656, 2182
MaeI	CTAG	9 cut(s)	648, 818, 1241, 1329, 1430, 1917, 2246, 2373, 2569
MaeII	ACGT	2 cut(s)	499, 1312
MfeI	CAATTG	1 cut(s)	533
MflI	RGATCY	2 cut(s)	717, 2242
MhlI	GDGCHC	1 cut(s)	1958
MlsI	TGGCCA	1 cut(s)	1595
MluNI	TGGCCA	1 cut(s)	1595
MlyI	GAGTC	4 cut(s)	989, 1521, 2129, 2171
MmeI	TCCRAC	1 cut(s)	887
Mox20I	TGGCCA	1 cut(s)	1595
Mph1103I	ATGCAT	1 cut(s)	2288
MroXI	GAANNNNTTC	1 cut(s)	1541
MscI	TGGCCA	1 cut(s)	1595
MseI	TTAA	8 cut(s)	11, 357, 615, 728, 966, 1989, 2163, 2541
MslI	CAYNNNNRTG	2 cut(s)	1297, 1980
Msp20I	TGGCCA	1 cut(s)	1595
MspA1I	CMGCKG	1 cut(s)	986
MspCI	CTTAAG	2 cut(s)	356, 965
MspI	CCGG	3 cut(s)	1284, 1927, 2123
MspR9I	CCNGG	4 cut(s)	722, 762, 1188, 2123
MunI	CAATTG	1 cut(s)	533
Mva1269I	GAATGC	2 cut(s)	1541, 2288
MvaI	CCWGG	3 cut(s)	722, 762, 1188
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	5 cut(s)	155, 521, 1268, 1586, 2303
NciI	CCSGG	1 cut(s)	2123
NlaIII	CATG	5 cut(s)	197, 288, 314, 1302, 1979
NlaIV	GGNNCC	4 cut(s)	266, 719, 935, 1944
NmuCI	GTSAC	5 cut(s)	1009, 2132, 2174, 2444, 2494
NsiI	ATGCAT	1 cut(s)	2288
NspI	RCATGY	2 cut(s)	288, 1302
PaeI	GCATGC	1 cut(s)	1302
PagI	TCATGA	2 cut(s)	193, 1975
PceI	AGGCCT	1 cut(s)	181
PctI	GAATGC	2 cut(s)	1541, 2288
PdmI	GAANNNNTTC	1 cut(s)	1541
PfeI	GAWTC	6 cut(s)	896, 1409, 2038, 2099, 2126, 2478
PflMI	CCANNNNNTGG	3 cut(s)	97, 311, 1157
PfoI	TCCNGGA	3 cut(s)	720, 760, 2121
PkrI	GCNGC	8 cut(s)	985, 988, 1273, 1334, 1515, 1579, 1997, 2000
PleI	GAGTC	4 cut(s)	989, 1521, 2129, 2171
PpsI	GAGTC	4 cut(s)	989, 1521, 2129, 2171
Psp124BI	GAGCTC	1 cut(s)	1958
Psp6I	CCWGG	3 cut(s)	720, 760, 1186
PspEI	GGTNACC	1 cut(s)	2444
PspGI	CCWGG	3 cut(s)	720, 760, 1186
PspN4I	GGNNCC	4 cut(s)	266, 719, 935, 1944
PspPI	GGNCC	3 cut(s)	264, 551, 860
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	2 cut(s)	97, 1157
PsuI	RGATCY	2 cut(s)	717, 2242
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	5 cut(s)	415, 683, 871, 1131, 1428
RsaNI	GTAC	5 cut(s)	414, 682, 870, 1130, 1427
RseI	CAYNNNNRTG	2 cut(s)	1297, 1980
SacI	GAGCTC	1 cut(s)	1958
SaqAI	TTAA	8 cut(s)	11, 357, 615, 728, 966, 1989, 2163, 2541
SatI	GCNGC	8 cut(s)	984, 987, 1272, 1333, 1514, 1578, 1996, 1999
Sau96I	GGNCC	3 cut(s)	264, 551, 860
ScaI	AGTACT	1 cut(s)	1428
SchI	GAGTC	4 cut(s)	989, 1521, 2129, 2171
ScrFI	CCNGG	4 cut(s)	722, 762, 1188, 2123
SduI	GDGCHC	1 cut(s)	1958
SfaNI	GCATC	2 cut(s)	1656, 2182
SfcI	CTRYAG	2 cut(s)	396, 1672
SinI	GGWCC	2 cut(s)	264, 551
SmiI	ATTTAAAT	1 cut(s)	2542
SmiMI	CAYNNNNRTG	2 cut(s)	1297, 1980
SmlI	CTYRAG	5 cut(s)	356, 965, 1565, 1610, 1699
SmoI	CTYRAG	5 cut(s)	356, 965, 1565, 1610, 1699
SpeI	ACTAGT	1 cut(s)	2372
SphI	GCATGC	1 cut(s)	1302
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	5 cut(s)	1444, 1513, 1995, 1998, 2251
SspI	AATATT	2 cut(s)	598, 2413
SspMI	CTAG	9 cut(s)	648, 818, 1241, 1329, 1430, 1917, 2246, 2373, 2569
SstI	GAGCTC	1 cut(s)	1958
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	4 cut(s)	720, 760, 1186, 2121
StyI	CCWWGG	3 cut(s)	1492, 1878, 2385
SwaI	ATTTAAAT	1 cut(s)	2542
TaaI	ACNGT	8 cut(s)	20, 44, 469, 790, 905, 1087, 1783, 2237
TaiI	ACGT	2 cut(s)	502, 1315
TaqI	TCGA	9 cut(s)	176, 561, 775, 1545, 1650, 1952, 2091, 2343, 2426
TaqII	GACCGA	1 cut(s)	1073
TatI	WGTACW	5 cut(s)	413, 681, 869, 1129, 1426
TauI	GCSGC	3 cut(s)	1516, 1998, 2001
TfiI	GAWTC	6 cut(s)	896, 1409, 2038, 2099, 2126, 2478
Tru1I	TTAA	8 cut(s)	11, 357, 615, 728, 966, 1989, 2163, 2541
Tru9I	TTAA	8 cut(s)	11, 357, 615, 728, 966, 1989, 2163, 2541
TscAI	CASTG	9 cut(s)	47, 90, 474, 1005, 1036, 1299, 1596, 1834, 2242
TseFI	GTSAC	5 cut(s)	1009, 2132, 2174, 2444, 2494
TseI	GCWGC	5 cut(s)	983, 986, 1271, 1332, 1577
Tsp45I	GTSAC	5 cut(s)	1009, 2132, 2174, 2444, 2494
TspDTI	ATGAA	7 cut(s)	299, 465, 912, 1130, 1599, 1872, 2325
TspGWI	ACGGA	1 cut(s)	2504
TspRI	CASTG	9 cut(s)	47, 90, 474, 1005, 1036, 1299, 1596, 1834, 2242
Van91I	CCANNNNNTGG	3 cut(s)	97, 311, 1157
Vha464I	CTTAAG	2 cut(s)	356, 965
VpaK11BI	GGWCC	2 cut(s)	264, 551
XapI	RAATTY	2 cut(s)	971, 1498
XceI	RCATGY	2 cut(s)	288, 1302
XmiI	GTMKAC	2 cut(s)	22, 169
XmnI	GAANNNNTTC	1 cut(s)	1541
XspI	CTAG	9 cut(s)	648, 818, 1241, 1329, 1430, 1917, 2246, 2373, 2569
ZrmI	AGTACT	1 cut(s)	1428
Zsp2I	ATGCAT	1 cut(s)	2288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.