Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029423.1

Orthogroup ID

OG0023062

Physical Location & Seq

Genomic Coordinates Reverse (-)

1637 .. 4408

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029423.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atggcggagcatctccatagtagtattgcccatttacaaggactcgattttatgtccaaacatcacatgctagcagatgtggtcaccatcataggtactcaagatattgtatctgagagggagttgggtatggcggagcatctccatagtagtattgcccatttacaaggactcgattttatgtccaaacatcacatgctagcagatgtggtcaccatcataggtactcaagatattgtatctgagagggagttgggtatggcggagcatctccatagtagtattgcccatttacaaggactcgattttatgtccaaacatcacatgctagcagatgtggtcaccatcataggtactcaagatattgtatctgagagggagttgggtatggcggagcatctccatagtagtattgcccatttacaaggactcgattttatgtccaaacatcacatgctagcagatgtggtcaccatcataggtactcaagatattgtatctgagagggagttgggtatggcggagcatctccatagtagtattgcccatttacaaggactcgattttatgtccaaacatcacatgctagcagatgtggtcaccatcataggtactcaagatattgtatctgagagggagatcagggccatggagggcagcgccggtgaaagtgtttggcgttgtggtgacaagggtgggatcggccttctccgatggatttcgggtggggatatcggtgctgcccctcggagtagtggtgtttgggtgtggaggctctcgggtgcccggagaggagctgctactagggtacccatgagcttgggtgcccttatcagattcacatgggcttgggcctttgtcaagggtgctttggcagacttgactgtgggctcgggccggatttggatccgtatttgggatcctggtcgcttacaaatccggatcttggatccgagacagttgcttatattgatatggtattggttctggttcttaggagttcgtttgctaattttcgagtttctgacaccctcggttactttcgaactcctggtgggcgaatcacctcttctaggtgatcatatcaccgtgcttggttggctttgcttcagggtgcgatcacgatggagatgcttctgtggtcagaaagggagatccggtttcgggcggcgtcttccttcgtccagggattggaggatatttgatggcggaaccaggcgagtgcttgcggcggtgaagcgaggtagcgggttgatgtcggagtgttcgaggtggccagcagcggtcatgctgcagtcagcgacagagcaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_49kDa

Protein Analysis

438

Amino Acids

48.86

Weight (kDa)

6.82

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023062)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001226.1_g000002 Rmu_sc0002048.1_g000002 Rmu_sc0029423.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	808
AccB1I	GGYRCC	3 cut(s)	782, 808, 824
AccB7I	CCANNNNNTGG	1 cut(s)	1191
AccIII	TCCGGA	1 cut(s)	939
AclWI	GGATC	9 cut(s)	707, 901, 914, 914, 927, 944, 950, 957, 1149
AcoI	YGGCCR	1 cut(s)	1274
AcuI	CTGAAG	1 cut(s)	1093
AcyI	GRCGYC	1 cut(s)	1171
AfaI	GTAC	6 cut(s)	97, 226, 355, 484, 613, 810
AfiI	CCNNNNNNNGG	5 cut(s)	916, 946, 1073, 1164, 1191
AjnI	CCWGG	4 cut(s)	922, 1050, 1184, 1214
AluBI	AGCT	2 cut(s)	797, 819
AluI	AGCT	2 cut(s)	797, 819
Alw26I	GTCTC	1 cut(s)	949
AlwI	GGATC	9 cut(s)	707, 901, 914, 914, 927, 944, 950, 957, 1149
Ama87I	CYCGRG	2 cut(s)	778, 892
Aor13HI	TCCGGA	1 cut(s)	939
AoxI	GGCC	5 cut(s)	645, 703, 852, 895, 1274
ApeKI	GCWGC	5 cut(s)	657, 740, 797, 1280, 1291
Asp718I	GGTACC	1 cut(s)	808
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	3 cut(s)	645, 852, 895
AsuC2I	CCSGG	1 cut(s)	787
AsuII	TTCGAA	1 cut(s)	1044
AsuNHI	GCTAGC	5 cut(s)	70, 199, 328, 457, 586
AvaI	CYCGRG	2 cut(s)	778, 892
BaeGI	GKGCMC	2 cut(s)	787, 829
BaeI	ACNNNNGTAYC	2 cut(s)	792, 825
BalI	TGGCCA	1 cut(s)	1276
BamHI	GGATCC	3 cut(s)	906, 919, 949
BanI	GGYRCC	3 cut(s)	782, 808, 824
BanII	GRGCYC	1 cut(s)	893
BbsI	GAAGAC	1 cut(s)	1166
BbvI	GCAGC	5 cut(s)	669, 727, 784, 1278, 1292
BccI	CCATC	8 cut(s)	95, 224, 353, 482, 611, 708, 1119, 1199
BcgI	CGANNNNNNTGC	4 cut(s)	943, 977, 1113, 1147
BciT130I	CCWGG	4 cut(s)	924, 1052, 1186, 1216
BclI	TGATCA	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	949
BfaI	CTAG	7 cut(s)	71, 200, 329, 458, 587, 804, 1073
BfmI	CTRYAG	1 cut(s)	1292
BfoI	RGCGCY	1 cut(s)	663
BisI	GCNGC	7 cut(s)	658, 741, 798, 1169, 1230, 1281, 1292
BlsI	GCNGC	7 cut(s)	659, 742, 799, 1170, 1231, 1282, 1293
Bme1390I	CCNGG	5 cut(s)	787, 924, 1052, 1186, 1216
BmeT110I	CYCGRG	2 cut(s)	778, 892
BmgT120I	GGNCC	3 cut(s)	645, 852, 895
BmiI	GGNNCC	7 cut(s)	784, 810, 826, 908, 921, 951, 1213
BmrFI	CCNGG	5 cut(s)	787, 924, 1052, 1186, 1216
BmsI	GCATC	6 cut(s)	19, 148, 277, 406, 535, 1121
BmtI	GCTAGC	5 cut(s)	74, 203, 332, 461, 590
BpiI	GAAGAC	1 cut(s)	1166
Bpu14I	TTCGAA	1 cut(s)	1044
BpuEI	CTTGAG	5 cut(s)	84, 213, 342, 471, 600
BpuMI	CCSGG	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	1171
BsaJI	CCNNGG	4 cut(s)	648, 746, 1032, 1185
BsaWI	WCCGGW	2 cut(s)	939, 1157
BsaXI	ACNNNNNCTCC	4 cut(s)	742, 772, 1144, 1174
Bsc4I	CCNNNNNNNGG	5 cut(s)	916, 946, 1073, 1164, 1191
Bse118I	RCCGGY	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	905
BseAI	TCCGGA	1 cut(s)	939
BseBI	CCWGG	4 cut(s)	924, 1052, 1186, 1216
BseDI	CCNNGG	4 cut(s)	648, 746, 1032, 1185
BseJI	GATNNNNATC	1 cut(s)	905
BseLI	CCNNNNNNNGG	5 cut(s)	916, 946, 1073, 1164, 1191
BseMII	CTCAG	5 cut(s)	105, 234, 363, 492, 621
BseRI	GAGGAG	1 cut(s)	807
BseSI	GKGCMC	2 cut(s)	787, 829
BseXI	GCAGC	5 cut(s)	669, 727, 784, 1278, 1292
BshFI	GGCC	5 cut(s)	647, 705, 854, 897, 1276
BshNI	GGYRCC	3 cut(s)	782, 808, 824
BsiHKCI	CYCGRG	2 cut(s)	778, 892
BsiSI	CCGG	5 cut(s)	663, 787, 898, 940, 1158
BslI	CCNNNNNNNGG	5 cut(s)	916, 946, 1073, 1164, 1191
BsmAI	GTCTC	1 cut(s)	949
BsnI	GGCC	5 cut(s)	647, 705, 854, 897, 1276
BsoBI	CYCGRG	2 cut(s)	778, 892
Bsp119I	TTCGAA	1 cut(s)	1044
Bsp1286I	GDGCHC	3 cut(s)	787, 829, 893
Bsp13I	TCCGGA	1 cut(s)	939
Bsp143I	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
Bsp19I	CCATGG	1 cut(s)	648
BspANI	GGCC	5 cut(s)	647, 705, 854, 897, 1276
BspCNI	CTCAG	5 cut(s)	106, 235, 364, 493, 622
BspEI	TCCGGA	1 cut(s)	939
BspLI	GGNNCC	7 cut(s)	784, 810, 826, 908, 921, 951, 1213
BspMAI	CTGCAG	1 cut(s)	1296
BspOI	GCTAGC	5 cut(s)	74, 203, 332, 461, 590
BspPI	GGATC	9 cut(s)	707, 901, 914, 914, 927, 944, 950, 957, 1149
BspT104I	TTCGAA	1 cut(s)	1044
BspT107I	GGYRCC	3 cut(s)	782, 808, 824
BsrFI	RCCGGY	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	4 cut(s)	648, 746, 1032, 1185
BssMI	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
BssNI	GRCGYC	1 cut(s)	1171
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	4 cut(s)	924, 1052, 1186, 1216
Bst4CI	ACNGT	3 cut(s)	886, 960, 1090
Bst6I	CTCTTC	1 cut(s)	1074
BstACI	GRCGYC	1 cut(s)	1171
BstBI	TTCGAA	1 cut(s)	1044
BstC8I	GCNNGC	7 cut(s)	72, 201, 330, 459, 588, 1227, 1278
BstDEI	CTNAG	6 cut(s)	114, 243, 372, 501, 630, 994
BstDSI	CCRYGG	1 cut(s)	648
BstEII	GGTNACC	5 cut(s)	82, 211, 340, 469, 598
BstENI	CCTNNNNNAGG	1 cut(s)	1071
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	9 cut(s)	642, 702, 909, 922, 945, 952, 1081, 1121, 1157
BstMAI	GTCTC	1 cut(s)	949
BstMBI	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
BstMWI	GCNNNNNNNGC	1 cut(s)	1099
BstNI	CCWGG	4 cut(s)	924, 1052, 1186, 1216
BstNSI	RCATGY	5 cut(s)	70, 199, 328, 457, 586
BstPI	GGTNACC	5 cut(s)	82, 211, 340, 469, 598
BstSCI	CCNGG	5 cut(s)	785, 922, 1050, 1184, 1214
BstSFI	CTRYAG	1 cut(s)	1292
BstSLI	GKGCMC	2 cut(s)	787, 829
BstV1I	GCAGC	5 cut(s)	669, 727, 784, 1278, 1292
BstV2I	GAAGAC	1 cut(s)	1166
BstX2I	RGATCY	5 cut(s)	906, 919, 942, 949, 1154
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	5 cut(s)	906, 919, 942, 949, 1154
BsuRI	GGCC	5 cut(s)	647, 705, 854, 897, 1276
BtgI	CCRYGG	1 cut(s)	648
Cac8I	GCNNGC	7 cut(s)	72, 201, 330, 459, 588, 1227, 1278
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	3 cut(s)	645, 852, 895
CseI	GACGC	1 cut(s)	1160
Csp6I	GTAC	6 cut(s)	96, 225, 354, 483, 612, 809
CviAII	CATG	9 cut(s)	67, 196, 325, 454, 583, 649, 814, 843, 1288
CviQI	GTAC	6 cut(s)	96, 225, 354, 483, 612, 809
DdeI	CTNAG	6 cut(s)	114, 243, 372, 501, 630, 994
DpnI	GATC	9 cut(s)	641, 701, 908, 921, 944, 951, 1080, 1120, 1156
DpnII	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
EaeI	YGGCCR	1 cut(s)	1274
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
EciI	GGCGGA	6 cut(s)	20, 149, 278, 407, 536, 1224
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	1093
Eco88I	CYCGRG	2 cut(s)	778, 892
Eco91I	GGTNACC	5 cut(s)	82, 211, 340, 469, 598
EcoNI	CCTNNNNNAGG	1 cut(s)	1071
EcoO65I	GGTNACC	5 cut(s)	82, 211, 340, 469, 598
EcoRII	CCWGG	4 cut(s)	922, 1050, 1184, 1214
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	9 cut(s)	70, 199, 328, 457, 586, 652, 817, 846, 1291
FatI	CATG	9 cut(s)	66, 195, 324, 453, 582, 648, 813, 842, 1287
FauI	CCCGC	1 cut(s)	1241
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	7 cut(s)	658, 741, 798, 1169, 1230, 1281, 1292
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	7 cut(s)	658, 741, 798, 1169, 1230, 1281, 1292
FspBI	CTAG	7 cut(s)	71, 200, 329, 458, 587, 804, 1073
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	7 cut(s)	658, 741, 798, 1169, 1230, 1281, 1292
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	5 cut(s)	647, 705, 854, 897, 1276
HapII	CCGG	5 cut(s)	663, 787, 898, 940, 1158
HgaI	GACGC	1 cut(s)	1160
HhaI	GCGC	1 cut(s)	662
Hin1I	GRCGYC	1 cut(s)	1171
Hin1II	CATG	9 cut(s)	70, 199, 328, 457, 586, 652, 817, 846, 1291
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	7 cut(s)	42, 171, 300, 429, 558, 837, 1061
HpaII	CCGG	5 cut(s)	663, 787, 898, 940, 1158
Hpy188III	TCNNGA	7 cut(s)	101, 230, 359, 488, 617, 940, 1122
HpyAV	CCTTC	2 cut(s)	716, 1188
HpyCH4III	ACNGT	3 cut(s)	886, 960, 1090
HpyCH4V	TGCA	1 cut(s)	1294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1099
HpyF3I	CTNAG	6 cut(s)	114, 243, 372, 501, 630, 994
Hsp92I	GRCGYC	1 cut(s)	1171
Hsp92II	CATG	9 cut(s)	70, 199, 328, 457, 586, 652, 817, 846, 1291
HspAI	GCGC	1 cut(s)	660
Kpn2I	TCCGGA	1 cut(s)	939
KpnI	GGTACC	1 cut(s)	812
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
LmnI	GCTCC	6 cut(s)	7, 136, 265, 394, 523, 794
Lsp1109I	GCAGC	5 cut(s)	669, 727, 784, 1278, 1292
LweI	GCATC	6 cut(s)	19, 148, 277, 406, 535, 1121
MaeI	CTAG	7 cut(s)	71, 200, 329, 458, 587, 804, 1073
MaeIII	GTNAC	7 cut(s)	82, 211, 340, 469, 598, 686, 1036
MalI	GATC	9 cut(s)	641, 701, 908, 921, 944, 951, 1080, 1120, 1156
MboI	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
MboII	GAAGA	2 cut(s)	1061, 1166
MflI	RGATCY	5 cut(s)	906, 919, 942, 949, 1154
MhlI	GDGCHC	3 cut(s)	787, 829, 893
MlsI	TGGCCA	1 cut(s)	1276
MluCI	AATT	1 cut(s)	1011
MluNI	TGGCCA	1 cut(s)	1276
MlyI	GAGTC	5 cut(s)	36, 165, 294, 423, 552
MmeI	TCCRAC	1 cut(s)	1239
Mox20I	TGGCCA	1 cut(s)	1276
MroI	TCCGGA	1 cut(s)	939
MscI	TGGCCA	1 cut(s)	1276
Msp20I	TGGCCA	1 cut(s)	1276
MspA1I	CMGCKG	1 cut(s)	1283
MspI	CCGG	5 cut(s)	663, 787, 898, 940, 1158
MspR9I	CCNGG	5 cut(s)	787, 924, 1052, 1186, 1216
MvaI	CCWGG	4 cut(s)	924, 1052, 1186, 1216
MwoI	GCNNNNNNNGC	1 cut(s)	1099
NciI	CCSGG	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
NheI	GCTAGC	5 cut(s)	70, 199, 328, 457, 586
NlaIII	CATG	9 cut(s)	70, 199, 328, 457, 586, 652, 817, 846, 1291
NlaIV	GGNNCC	7 cut(s)	784, 810, 826, 908, 921, 951, 1213
NmuCI	GTSAC	6 cut(s)	82, 211, 340, 469, 598, 686
NspI	RCATGY	5 cut(s)	70, 199, 328, 457, 586
NspV	TTCGAA	1 cut(s)	1044
PcsI	WCGNNNNNNNCGW	1 cut(s)	1265
PfeI	GAWTC	2 cut(s)	837, 1061
PflMI	CCANNNNNTGG	1 cut(s)	1191
PkrI	GCNGC	7 cut(s)	659, 742, 799, 1170, 1231, 1282, 1293
PleI	GAGTC	5 cut(s)	36, 165, 294, 423, 552
PpsI	GAGTC	5 cut(s)	36, 165, 294, 423, 552
Psp6I	CCWGG	4 cut(s)	922, 1050, 1184, 1214
PspEI	GGTNACC	5 cut(s)	82, 211, 340, 469, 598
PspGI	CCWGG	4 cut(s)	922, 1050, 1184, 1214
PspN4I	GGNNCC	7 cut(s)	784, 810, 826, 908, 921, 951, 1213
PspPI	GGNCC	3 cut(s)	645, 852, 895
PstI	CTGCAG	1 cut(s)	1296
PsuI	RGATCY	5 cut(s)	906, 919, 942, 949, 1154
RsaI	GTAC	6 cut(s)	97, 226, 355, 484, 613, 810
RsaNI	GTAC	6 cut(s)	96, 225, 354, 483, 612, 809
SatI	GCNGC	7 cut(s)	658, 741, 798, 1169, 1230, 1281, 1292
Sau3AI	GATC	9 cut(s)	639, 699, 906, 919, 942, 949, 1078, 1118, 1154
Sau96I	GGNCC	3 cut(s)	645, 852, 895
SchI	GAGTC	5 cut(s)	36, 165, 294, 423, 552
ScrFI	CCNGG	5 cut(s)	787, 924, 1052, 1186, 1216
SduI	GDGCHC	3 cut(s)	787, 829, 893
SfaNI	GCATC	6 cut(s)	19, 148, 277, 406, 535, 1121
SfcI	CTRYAG	1 cut(s)	1292
SfuI	TTCGAA	1 cut(s)	1044
SgrAI	CRCCGGYG	1 cut(s)	662
SmlI	CTYRAG	5 cut(s)	99, 228, 357, 486, 615
SmoI	CTYRAG	5 cut(s)	99, 228, 357, 486, 615
Sse9I	AATT	1 cut(s)	1011
SspMI	CTAG	7 cut(s)	71, 200, 329, 458, 587, 804, 1073
StyD4I	CCNGG	5 cut(s)	785, 922, 1050, 1184, 1214
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	886, 960, 1090
TaqI	TCGA	8 cut(s)	45, 174, 303, 432, 561, 1017, 1044, 1268
TasI	AATT	1 cut(s)	1011
TauI	GCSGC	2 cut(s)	1171, 1232
TfiI	GAWTC	2 cut(s)	837, 1061
TseFI	GTSAC	6 cut(s)	82, 211, 340, 469, 598, 686
TseI	GCWGC	5 cut(s)	657, 740, 797, 1280, 1291
Tsp45I	GTSAC	6 cut(s)	82, 211, 340, 469, 598, 686
TspGWI	ACGGA	1 cut(s)	899
Van91I	CCANNNNNTGG	1 cut(s)	1191
XagI	CCTNNNNNAGG	1 cut(s)	1071
XceI	RCATGY	5 cut(s)	70, 199, 328, 457, 586
XspI	CTAG	7 cut(s)	71, 200, 329, 458, 587, 804, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.