Rroxscaffold_7G00183090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0023062
Physical Location & Seq
Reverse (-)
22122026 .. 22132533
10508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183090.1

Sequence Viewer

Length: 411 bp
ATGGTATTGGTTCGGTTCTTAGGAGTTCGTTTGCTAATTTTTGAGTTTTTGAAACCATCGATTACATTCGAACTCCTGGTGAGTGAATCACCTCTCCTAGGTGATCATATCATCGGTTACGGTTTCTGTTACGATTACATTTACCTTTACACTACTCTCATGACATATGCAAGTGCAACGATGTCTCCCCACTCCGGAGCTTCGATACTGTCTTGGCGAGGCCCATGGTGGCGCGTCGAGGCGATCTATGAGCAAGCCGGGGCTCAGGCGGTAGCCTGCTTAGCGCTCTCGTGGCCGTGGGCCTCCATCACCCACTTGATCCGCGGGCTTTTGATGAGGCCTAAGGCGGCGAAGGTCGGTGCCATGGCCAATGTGGAGCCGTTGAAGCAAAAGGACGCTATGGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

8.6

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023062)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001226.1_g000002 Rmu_sc0002048.1_g000002 Rmu_sc0029423.1_g000001
rosa_roxburghii Rroxscaffold_7G00183090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 2 cut(s) 234, 324
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 4 cut(s) 269, 322, 324, 347
AclWI GGATC 1 cut(s) 313
AcoI YGGCCR 2 cut(s) 293, 366
AfeI AGCGCT 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 98, 194
AgsI TTSAA 2 cut(s) 52, 385
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 313
Aor13HI TCCGGA 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 285
AoxI GGCC 5 cut(s) 220, 293, 300, 338, 366
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 2 cut(s) 234, 286
AspS9I GGNCC 2 cut(s) 221, 300
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 4 cut(s) 81, 91, 113, 301
AsuII TTCGAA 1 cut(s) 69
AvrII CCTAGG 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 342
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 289
BccI CCATC 2 cut(s) 64, 314
BceAI ACGGC 2 cut(s) 280, 364
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 77, 259
BmgT120I GGNCC 2 cut(s) 221, 300
BmiI GGNNCC 2 cut(s) 361, 378
BmrFI CCNGG 2 cut(s) 77, 259
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 59
BsaJI CCNNGG 6 cut(s) 97, 224, 258, 296, 322, 363
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 194
Bse21I CCTNAGG 1 cut(s) 342
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 59
BseDI CCNNGG 6 cut(s) 97, 224, 258, 296, 322, 363
BseLI CCNNNNNNNGG 2 cut(s) 98, 194
BseMII CTCAG 1 cut(s) 278
Bsh1236I CGCG 2 cut(s) 234, 324
BshFI GGCC 5 cut(s) 222, 295, 302, 340, 368
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 59
BsiSI CCGG 2 cut(s) 195, 258
BslI CCNNNNNNNGG 2 cut(s) 98, 194
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 5 cut(s) 222, 295, 302, 340, 368
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 4 cut(s) 103, 243, 318, 403
Bsp1720I GCTNAGC 1 cut(s) 280
Bsp19I CCATGG 2 cut(s) 224, 363
BspACI CCGC 4 cut(s) 269, 322, 324, 347
BspANI GGCC 5 cut(s) 222, 295, 302, 340, 368
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 59
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 2 cut(s) 234, 324
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 361, 378
BspPI GGATC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 359
BssECI CCNNGG 6 cut(s) 97, 224, 258, 296, 322, 363
BssMI GATC 4 cut(s) 103, 243, 318, 403
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 3 cut(s) 97, 224, 363
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 122, 210
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 255, 277, 326
BstDEI CTNAG 4 cut(s) 19, 264, 280, 342
BstDSI CCRYGG 4 cut(s) 224, 296, 322, 363
BstENI CCTNNNNNAGG 1 cut(s) 96
BstFNI CGCG 2 cut(s) 234, 324
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 234, 286
BstKTI GATC 4 cut(s) 106, 246, 321, 406
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 103, 243, 318, 403
BstMWI GCNNNNNNNGC 3 cut(s) 281, 292, 385
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 75, 257
BstUI CGCG 2 cut(s) 234, 324
Bsu15I ATCGAT 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 5 cut(s) 222, 295, 302, 340, 368
BsuTUI ATCGAT 1 cut(s) 59
BtgI CCRYGG 4 cut(s) 224, 296, 322, 363
Cac8I GCNNGC 3 cut(s) 255, 277, 326
CciI TCATGA 1 cut(s) 159
CfoI GCGC 2 cut(s) 234, 286
Cfr13I GGNCC 2 cut(s) 221, 300
Cfr42I CCGCGG 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 59
CseI GACGC 2 cut(s) 223, 404
CviAII CATG 3 cut(s) 160, 225, 364
DdeI CTNAG 4 cut(s) 19, 264, 280, 342
DpnI GATC 4 cut(s) 105, 245, 320, 405
DpnII GATC 4 cut(s) 103, 243, 318, 403
EaeI YGGCCR 2 cut(s) 293, 366
Eco130I CCWWGG 3 cut(s) 97, 224, 363
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 3 cut(s) 97, 224, 363
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 3 cut(s) 97, 224, 363
FaeI CATG 3 cut(s) 163, 228, 367
FaiI YATR 8 cut(s) 108, 161, 166, 168, 226, 249, 365, 401
FatI CATG 3 cut(s) 159, 224, 363
FauI CCCGC 1 cut(s) 317
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 98
GlaI GCGC 2 cut(s) 233, 285
GluI GCNGC 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 5 cut(s) 222, 295, 302, 340, 368
HapII CCGG 2 cut(s) 195, 258
HgaI GACGC 2 cut(s) 223, 404
HhaI GCGC 2 cut(s) 234, 286
Hin1II CATG 3 cut(s) 163, 228, 367
Hin6I GCGC 2 cut(s) 232, 284
HinP1I GCGC 2 cut(s) 232, 284
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 195, 258
HphI GGTGA 4 cut(s) 81, 91, 113, 301
Hpy188III TCNNGA 2 cut(s) 160, 195
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 122, 210
HpyCH4V TGCA 2 cut(s) 170, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 292, 385
HpyF3I CTNAG 4 cut(s) 19, 264, 280, 342
Hsp92II CATG 3 cut(s) 163, 228, 367
HspAI GCGC 2 cut(s) 232, 284
Kpn2I TCCGGA 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 103
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 4 cut(s) 103, 243, 318, 403
LmnI GCTCC 2 cut(s) 197, 376
LpnPI CCDG 6 cut(s) 62, 89, 208, 251, 271, 289
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 116, 128
MalI GATC 4 cut(s) 105, 245, 320, 405
MboI GATC 4 cut(s) 103, 243, 318, 403
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 368
MnlI CCTC 5 cut(s) 102, 212, 232, 313, 330
Mox20I TGGCCA 1 cut(s) 368
MroI TCCGGA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 2 cut(s) 195, 258
MspR9I CCNGG 2 cut(s) 77, 259
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 2 cut(s) 234, 324
MwoI GCNNNNNNNGC 3 cut(s) 281, 292, 385
NciI CCSGG 1 cut(s) 259
NcoI CCATGG 2 cut(s) 224, 363
NdeI CATATG 1 cut(s) 166
NdeII GATC 4 cut(s) 103, 243, 318, 403
NlaIII CATG 3 cut(s) 163, 228, 367
NlaIV GGNNCC 2 cut(s) 361, 378
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 361, 378
PspPI GGNCC 2 cut(s) 221, 300
SacII CCGCGG 1 cut(s) 325
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 4 cut(s) 103, 243, 318, 403
Sau96I GGNCC 2 cut(s) 221, 300
ScrFI CCNGG 2 cut(s) 77, 259
SduI GDGCHC 1 cut(s) 265
SetI ASST 5 cut(s) 94, 103, 147, 202, 357
Sfr303I CCGCGG 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 325
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 4 cut(s) 269, 322, 324, 347
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 75, 257
StyI CCWWGG 3 cut(s) 97, 224, 363
TaaI ACNGT 2 cut(s) 122, 210
TaqI TCGA 4 cut(s) 59, 69, 203, 237
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.