Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032286.1

Orthogroup ID

OG0023105

Physical Location & Seq

Genomic Coordinates Forward (+)

12 .. 554

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032286.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgctgcaattaaatctttctcaaaatagctttaatggctcaatacctccgcaagtatttaatggcctcccttccttgtcaatttcattggatttgtccagaaacttattcttttctggttcccttccagaggaggttggaaagttgaagaatcttgctatattggatgcttctgataacatgttaacgggacagcttcctaaaagccttggtagctgtgagagtttagaagtcttacatttgcaaggcaacttctttgaggggtcaattcctccgtctatgacttcattgagaggaattcaagatttagacctttctcgcaacaatctgtcaggtgaaattccacaatttttaaagggttttcccttaaagaatctgaacctctctttcaatcagttttcaggagctgtaccaattgatggtgtctttaaaaatgtaagtgcaacctcaattattggaaacaccgggctgtgtggcggtattgctaagctcttgttgccccatgcaactctaaagagtccaaaagactgtctcgtagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.14

Weight (kDa)

6.07

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023105)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004484.1_g000013 Rmu_sc0032286.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037400
rosa_rugosa	Rorug03G0358000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	419
AciI	CCGC	2 cut(s)	50, 477
AcsI	RAATTY	2 cut(s)	297, 339
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	130, 419
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	148, 302, 391
AluBI	AGCT	5 cut(s)	30, 196, 216, 407, 490
AluI	AGCT	5 cut(s)	30, 196, 216, 407, 490
Alw26I	GTCTC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	297, 339
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	347
BccI	CCATC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 419
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	130, 419
BseRI	GAGGAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	130, 419
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	66
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	2 cut(s)	50, 477
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 213, 496
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	3 cut(s)	181, 503, 540
CviJI	RGCY	9 cut(s)	30, 39, 66, 196, 207, 216, 407, 469, 490
CviKI_1	RGCY	9 cut(s)	30, 39, 66, 196, 207, 216, 407, 469, 490
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	486
DraI	TTTAAA	2 cut(s)	354, 430
Eco130I	CCWWGG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	184, 506, 543
FaiI	YATR	5 cut(s)	161, 182, 281, 504, 541
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	3 cut(s)	180, 502, 539
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	3 cut(s)	184, 506, 543
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	3 cut(s)	151, 373, 517
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	175, 378
Hpy188III	TCNNGA	4 cut(s)	99, 128, 302, 402
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	81, 134
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	7, 244, 443, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 213, 496
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	184, 506, 543
KspAI	GTTAAC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	6 cut(s)	102, 112, 141, 318, 387, 478
LweI	GCATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	160
MfeI	CAATTG	1 cut(s)	414
MluCI	AATT	8 cut(s)	8, 81, 267, 297, 339, 347, 414, 450
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	9 cut(s)	57, 77, 124, 127, 253, 282, 287, 392, 457
MseI	TTAA	7 cut(s)	11, 33, 60, 185, 353, 368, 429
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	36, 213, 496
NciI	CCSGG	1 cut(s)	466
NlaIII	CATG	3 cut(s)	184, 506, 543
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	184
PciI	ACATGT	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	151, 373
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PscI	ACATGT	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	7 cut(s)	11, 33, 60, 185, 353, 368, 429
SatI	GCNGC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	8 cut(s)	8, 81, 267, 297, 339, 347, 414, 450
SsiI	CCGC	2 cut(s)	50, 477
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	530
TasI	AATT	8 cut(s)	8, 81, 267, 297, 339, 347, 414, 450
TfiI	GAWTC	2 cut(s)	151, 373
Tru1I	TTAA	7 cut(s)	11, 33, 60, 185, 353, 368, 429
Tru9I	TTAA	7 cut(s)	11, 33, 60, 185, 353, 368, 429
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	75, 276
TspGWI	ACGGA	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	297, 339
XceI	RCATGY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.