Rroxscaffold_1G00037400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0023105
Physical Location & Seq
Forward (+)
54566861 .. 54568716
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037400.1

Sequence Viewer

Length: 672 bp
ATGTTAAGTCGGCTTCACTTGCGAGCAAATAATCTTAATGGCAGCATCCCTTCGAGTATAGGGAAATGTCATGGGTTGTTGGAATTGGATCTTTCTGAAAATAACCTTAATGGTGCAATACCCAAGAAACTACTTATTGGCCTCCTCTCCTTATCAATTTATCTCGACTTGTCCAGAAACCACTTTGTTGGTTCCCTTCCTATGCAGATCGGCAAGTTGAGGAATCTAGGTGAACTTGACGTTTCTGAGAACATGTTATCGGGGGAGCTTCCTAATAGCCTCGGACAGATTCCACAATTCTTCGAGGGCTTGGGAAACTTGGAGAATCTGAACCTATCCTTTAATCACTTATGGGGAGAAGTACCCATTGAAGGTGTTTATAAGAATGCAAGTGCAACATCAGTTGTTGGAAACACCGCACTCTGCGGAGGTATTGCAGAGCTTCGACTTCCTGTGTGCAAATCTGAAGTGTCTAAAGCAAGAGGAGGCATCACCACTATCGATGAAGCTCGCAATCAACCCATCGCAAGTCCACTACAGAAGATTGAAGAGTGCTTGACGTTGATATTTGGAATTGGAATTGCTTGTTCTGCTGAATCCCCAACAAACCGAAAGGACATAAGTGATGTTGTATCTGAATTGAACACCATCAAGAACAATCTTCTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

23.9

Weight (kDa)

5.6

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 18 - 99 4e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023105)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004484.1_g000013 Rmu_sc0032286.1_g000001
rosa_roxburghii Rroxscaffold_1G00037400
rosa_rugosa Rorug03G0358000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AciI CCGC 2 cut(s) 417, 426
AclWI GGATC 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 371, 548, 643
AluBI AGCT 3 cut(s) 268, 442, 509
AluI AGCT 3 cut(s) 268, 442, 509
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 242, 484
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 530, 656
BfaI CTAG 2 cut(s) 227, 670
BfmI CTRYAG 1 cut(s) 536
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 2 cut(s) 54, 498
Bsa29I ATCGAT 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 2 cut(s) 134, 498
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 371
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 88, 207
BspACI CCGC 2 cut(s) 417, 426
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 2 cut(s) 88, 207
Bst6I CTCTTC 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 24, 511
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 2 cut(s) 91, 210
BstMBI GATC 2 cut(s) 88, 207
BstMWI GCNNNNNNNGC 2 cut(s) 19, 590
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 536
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 501
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 24, 511
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 1 cut(s) 362
CviAII CATG 2 cut(s) 71, 253
CviJI RGCY 8 cut(s) 13, 141, 268, 279, 309, 442, 509, 669
CviKI_1 RGCY 8 cut(s) 13, 141, 268, 279, 309, 442, 509, 669
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 90, 209
DpnII GATC 2 cut(s) 88, 207
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 486
FaeI CATG 2 cut(s) 74, 256
FaiI YATR 7 cut(s) 59, 72, 203, 254, 352, 381, 620
FatI CATG 2 cut(s) 70, 252
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 2 cut(s) 227, 670
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 2 cut(s) 74, 256
HinfI GANTC 4 cut(s) 223, 289, 325, 596
HphI GGTGA 2 cut(s) 242, 484
Hpy166II GTNNAC 2 cut(s) 233, 533
Hpy188I TCNGA 6 cut(s) 97, 247, 284, 330, 466, 637
Hpy188III TCNNGA 3 cut(s) 164, 174, 652
Hpy8I GTNNAC 2 cut(s) 233, 533
HpyAV CCTTC 3 cut(s) 60, 206, 365
HpyCH4IV ACGT 2 cut(s) 240, 560
HpyCH4V TGCA 6 cut(s) 116, 205, 389, 395, 437, 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 590
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 240, 560
Hsp92II CATG 2 cut(s) 74, 256
Kzo9I GATC 2 cut(s) 88, 207
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 2 cut(s) 187, 465
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 2 cut(s) 54, 498
MaeI CTAG 2 cut(s) 227, 670
MaeII ACGT 2 cut(s) 240, 560
MalI GATC 2 cut(s) 90, 209
MboI GATC 2 cut(s) 88, 207
MboII GAAGA 4 cut(s) 292, 553, 560, 653
MflI RGATCY 1 cut(s) 88
MluCI AATT 6 cut(s) 83, 156, 296, 573, 579, 638
MmeI TCCRAC 2 cut(s) 60, 388
MnlI CCTC 8 cut(s) 152, 155, 213, 290, 298, 422, 476, 479
MseI TTAA 4 cut(s) 5, 36, 108, 342
Mva1269I GAATGC 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 19, 590
NdeII GATC 2 cut(s) 88, 207
NlaIII CATG 2 cut(s) 74, 256
NlaIV GGNNCC 1 cut(s) 193
NspI RCATGY 1 cut(s) 256
PciI ACATGT 1 cut(s) 252
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 4 cut(s) 223, 289, 325, 596
PkrI GCNGC 1 cut(s) 44
PscI ACATGT 1 cut(s) 252
PsiI TTATAA 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 4 cut(s) 5, 36, 108, 342
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 88, 207
SfaNI GCATC 2 cut(s) 54, 498
SfcI CTRYAG 1 cut(s) 536
Sse9I AATT 6 cut(s) 83, 156, 296, 573, 579, 638
SsiI CCGC 2 cut(s) 417, 426
SspMI CTAG 2 cut(s) 227, 670
TaiI ACGT 2 cut(s) 243, 563
TaqI TCGA 5 cut(s) 53, 165, 303, 445, 501
TasI AATT 6 cut(s) 83, 156, 296, 573, 579, 638
TfiI GAWTC 4 cut(s) 223, 289, 325, 596
Tru1I TTAA 4 cut(s) 5, 36, 108, 342
Tru9I TTAA 4 cut(s) 5, 36, 108, 342
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 519
XceI RCATGY 1 cut(s) 256
XspI CTAG 2 cut(s) 227, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.